Wall clock time and date at job start Tue Mar 31 2020 00:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38584 * 120.72506 * 2 1 4 4 C 1.38785 * 119.26352 * 179.97438 * 3 2 1 5 5 O 1.35664 * 119.64362 * 180.02562 * 4 3 2 6 6 N 1.32320 * 120.70991 * 359.72652 * 4 3 2 7 7 C 1.32418 * 121.56307 * 0.55937 * 6 4 3 8 8 N 1.39401 * 119.65881 * 179.71296 * 7 6 4 9 9 C 1.34781 * 120.00073 * 4.80433 * 8 7 6 10 10 O 1.21279 * 119.99751 * 354.91374 * 9 8 7 11 11 C 1.50694 * 120.00253 * 174.91936 * 9 8 7 12 12 C 1.52997 * 109.47464 * 179.97438 * 11 9 8 13 13 C 1.52995 * 109.47177 * 179.97438 * 12 11 9 14 14 C 1.53005 * 109.47071 * 180.02562 * 13 12 11 15 15 C 1.50704 * 109.47167 * 179.97438 * 14 13 12 16 16 H 1.07998 * 119.99636 * 0.02562 * 15 14 13 17 17 C 1.37872 * 119.99838 * 179.97438 * 15 14 13 18 18 N 1.31513 * 119.99642 * 180.02562 * 17 15 14 19 19 Si 1.86806 * 120.00206 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.46867 * 90.00004 * 19 17 15 21 21 H 1.48501 * 109.46968 * 209.99691 * 19 17 15 22 22 H 1.48500 * 109.46725 * 330.00077 * 19 17 15 23 23 C 1.38514 * 120.71722 * 179.97438 * 2 1 3 24 24 H 1.09005 * 109.47024 * 270.02300 * 1 2 3 25 25 H 1.09005 * 109.47246 * 30.01557 * 1 2 3 26 26 H 1.08993 * 109.47963 * 150.02291 * 1 2 3 27 27 H 1.08001 * 120.36713 * 0.02562 * 3 2 1 28 28 H 0.96699 * 114.00314 * 89.99412 * 5 4 3 29 29 H 0.96992 * 120.00036 * 184.80121 * 8 7 6 30 30 H 1.09007 * 109.46536 * 299.99786 * 11 9 8 31 31 H 1.09000 * 109.47554 * 59.99351 * 11 9 8 32 32 H 1.08997 * 109.47210 * 299.99768 * 12 11 9 33 33 H 1.09005 * 109.46688 * 59.99629 * 12 11 9 34 34 H 1.09001 * 109.47542 * 299.99540 * 13 12 11 35 35 H 1.09000 * 109.47514 * 59.99828 * 13 12 11 36 36 H 1.08997 * 109.47104 * 299.99862 * 14 13 12 37 37 H 1.09002 * 109.47142 * 60.00248 * 14 13 12 38 38 H 0.97003 * 119.99616 * 179.97438 * 18 17 15 39 39 H 1.08003 * 120.38992 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2150 1.1913 0.0000 4 6 3.6024 1.1559 0.0005 5 8 4.3033 2.3175 0.0011 6 7 4.2490 0.0014 0.0065 7 6 3.6032 -1.1546 0.0011 8 7 4.3244 -2.3476 0.0016 9 6 5.6680 -2.3228 0.1054 10 8 6.2567 -1.2625 0.1053 11 6 6.4387 -3.6125 0.2213 12 6 7.9341 -3.3056 0.3240 13 6 8.7165 -4.6151 0.4423 14 6 10.2119 -4.3081 0.5457 15 6 10.9825 -5.5979 0.6629 16 1 10.4582 -6.5420 0.6632 17 6 12.3569 -5.5725 0.7687 18 7 13.0295 -6.6981 0.8705 19 14 13.2639 -3.9393 0.7675 20 1 13.3957 -3.4454 2.1617 21 1 14.6143 -4.1235 0.1779 22 1 12.5025 -2.9510 -0.0379 23 6 2.2145 -1.1908 0.0005 24 1 -0.3633 0.0004 1.0277 25 1 -0.3634 0.8899 -0.5141 26 1 -0.3635 -0.8901 -0.5134 27 1 1.6930 2.1367 0.0004 28 1 4.5061 2.6541 0.8846 29 1 3.8593 -3.1955 -0.0726 30 1 6.1156 -4.1499 1.1129 31 1 6.2539 -4.2268 -0.6600 32 1 8.2569 -2.7685 -0.5678 33 1 8.1191 -2.6912 1.2052 34 1 8.3937 -5.1519 1.3344 35 1 8.5314 -5.2298 -0.4385 36 1 10.5350 -3.7711 -0.3461 37 1 10.3966 -3.6936 1.4269 38 1 13.9965 -6.6802 0.9445 39 1 1.6927 -2.1364 0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000910607754.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:44 Heat of formation + Delta-G solvation = -80.619936 kcal Electronic energy + Delta-G solvation = -20331.286961 eV Core-core repulsion = 17044.746765 eV Total energy + Delta-G solvation = -3286.540195 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.95465 -40.48361 -38.25534 -36.74178 -35.95025 -34.65628 -34.31721 -32.00822 -30.44711 -28.79698 -27.71871 -24.70980 -24.10726 -22.86908 -21.70484 -21.22900 -19.60255 -18.86535 -18.24361 -18.08357 -17.03610 -16.94647 -16.82186 -16.36266 -16.26421 -15.67484 -15.19599 -14.71212 -14.69028 -14.04716 -13.86858 -13.69243 -13.57538 -13.52614 -13.46898 -12.86035 -12.80622 -12.60223 -12.35781 -12.08536 -11.76813 -11.61933 -11.53804 -11.35627 -11.28452 -11.17401 -10.76644 -10.44788 -10.07595 -9.27675 -8.30401 -6.33036 -0.03808 0.24933 1.33502 1.35193 1.48058 1.63278 1.80011 2.34959 2.61645 2.83704 3.04999 3.58320 3.73390 3.95423 4.01971 4.14182 4.15683 4.21468 4.43188 4.60591 4.64512 4.74414 4.77608 4.77735 4.84818 4.87113 5.07148 5.12735 5.19744 5.26954 5.31792 5.37399 5.59758 5.65218 5.67887 5.71245 6.17740 6.29108 6.60123 6.74819 6.96974 7.31621 7.32084 8.86058 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.036529 B = 0.002697 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.333347 B =10379.536412 C =11100.696230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.001 4.001 3 C -0.217 4.217 4 C 0.316 3.684 5 O -0.499 6.499 6 N -0.555 5.555 7 C 0.363 3.637 8 N -0.651 5.651 9 C 0.500 3.500 10 O -0.523 6.523 11 C -0.125 4.125 12 C -0.099 4.099 13 C -0.092 4.092 14 C -0.018 4.018 15 C -0.529 4.529 16 H 0.039 0.961 17 C 0.004 3.996 18 N -0.949 5.949 19 Si 0.946 3.054 20 H -0.267 1.267 21 H -0.281 1.281 22 H -0.255 1.255 23 C -0.209 4.209 24 H 0.094 0.906 25 H 0.083 0.917 26 H 0.090 0.910 27 H 0.161 0.839 28 H 0.416 0.584 29 H 0.439 0.561 30 H 0.125 0.875 31 H 0.124 0.876 32 H 0.048 0.952 33 H 0.050 0.950 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.012 0.988 37 H 0.011 0.989 38 H 0.266 0.734 39 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.304 13.665 -0.565 35.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.009 4.009 3 C -0.239 4.239 4 C 0.137 3.863 5 O -0.308 6.308 6 N -0.282 5.282 7 C 0.132 3.868 8 N -0.301 5.301 9 C 0.288 3.712 10 O -0.395 6.395 11 C -0.165 4.165 12 C -0.137 4.137 13 C -0.130 4.130 14 C -0.056 4.056 15 C -0.567 4.567 16 H 0.058 0.942 17 C -0.193 4.193 18 N -0.590 5.590 19 Si 0.770 3.230 20 H -0.192 1.192 21 H -0.207 1.207 22 H -0.179 1.179 23 C -0.232 4.232 24 H 0.112 0.888 25 H 0.102 0.898 26 H 0.109 0.891 27 H 0.178 0.822 28 H 0.276 0.724 29 H 0.281 0.719 30 H 0.143 0.857 31 H 0.142 0.858 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.030 0.970 37 H 0.030 0.970 38 H 0.075 0.925 39 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -30.753 14.300 -1.121 33.934 hybrid contribution 0.444 0.183 0.476 0.676 sum -30.309 14.483 -0.644 33.598 Atomic orbital electron populations 1.20922 0.86613 1.04900 1.04359 1.20433 0.98616 0.90831 0.91048 1.22114 0.92393 1.01226 1.08201 1.19278 0.87963 0.84260 0.94770 1.84715 1.76588 1.33851 1.35655 1.66857 1.43444 0.98691 1.19196 1.18495 0.88997 0.85234 0.94076 1.43688 1.07005 1.07725 1.71632 1.21653 0.82147 0.92433 0.74986 1.90816 1.68901 1.34045 1.45726 1.21713 0.93971 0.93663 1.07118 1.21295 0.93574 0.97287 1.01574 1.21325 0.93953 0.96164 1.01532 1.19590 0.94948 0.95082 0.95965 1.21535 0.92165 0.93590 1.49365 0.94229 1.25972 0.98856 1.00062 0.94383 1.70055 1.07964 1.28545 1.52474 0.85719 0.77774 0.80217 0.79321 1.19236 1.20675 1.17864 1.21719 0.90746 1.01667 1.09027 0.88789 0.89838 0.89129 0.82153 0.72360 0.71926 0.85742 0.85840 0.93299 0.93128 0.92108 0.92188 0.97002 0.97030 0.92518 0.80551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.45 10.06 71.24 0.72 0.27 16 2 C 0.00 -0.02 5.91 -19.72 -0.12 -0.13 16 3 C -0.22 -3.52 9.74 22.48 0.22 -3.31 16 4 C 0.32 7.79 7.74 84.75 0.66 8.44 16 5 O -0.50 -11.71 13.56 -89.80 -1.22 -12.92 16 6 N -0.56 -16.75 7.91 -306.12 -2.42 -19.17 16 7 C 0.36 8.16 7.42 132.87 0.99 9.15 16 8 N -0.65 -12.38 5.39 -308.50 -1.66 -14.04 16 9 C 0.50 13.47 7.79 87.65 0.68 14.16 16 10 O -0.52 -20.06 14.24 -3.03 -0.04 -20.10 16 11 C -0.13 -2.80 5.70 29.85 0.17 -2.63 16 12 C -0.10 -3.26 4.50 30.59 0.14 -3.12 16 13 C -0.09 -3.53 5.15 30.59 0.16 -3.37 16 14 C -0.02 -0.91 4.04 29.85 0.12 -0.79 16 15 C -0.53 -31.32 9.66 25.60 0.25 -31.07 16 16 H 0.04 2.52 7.99 -2.91 -0.02 2.49 16 17 C 0.00 0.24 5.47 84.65 0.46 0.70 16 18 N -0.95 -60.78 13.96 21.45 0.30 -60.48 16 19 Si 0.95 46.68 27.47 68.60 1.88 48.56 16 20 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 21 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 22 H -0.25 -12.08 6.54 99.48 0.65 -11.43 16 23 C -0.21 -2.81 9.63 22.50 0.22 -2.60 16 24 H 0.09 0.18 8.14 -2.38 -0.02 0.16 16 25 H 0.08 0.23 8.10 -2.38 -0.02 0.21 16 26 H 0.09 0.13 8.10 -2.39 -0.02 0.11 16 27 H 0.16 1.76 8.06 -2.91 -0.02 1.74 16 28 H 0.42 5.72 9.06 -74.06 -0.67 5.05 16 29 H 0.44 3.84 8.70 -92.71 -0.81 3.03 16 30 H 0.12 2.10 8.14 -2.38 -0.02 2.08 16 31 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.05 1.76 8.10 -2.39 -0.02 1.74 16 33 H 0.05 1.79 8.10 -2.38 -0.02 1.78 16 34 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.01 0.58 7.20 -2.39 -0.02 0.56 16 37 H 0.01 0.56 7.57 -2.39 -0.02 0.54 16 38 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 39 H 0.18 0.92 8.06 -2.91 -0.02 0.89 16 Total: -1.00 -87.66 334.15 1.03 -86.63 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -0.46 Total: 5.82 kcal Atomic # 6 Polarization: -18.95 SS G_CDS: 4.66 Total: -14.30 kcal Atomic # 7 Polarization: -89.91 SS G_CDS: -3.78 Total: -93.69 kcal Atomic # 8 Polarization: -31.76 SS G_CDS: -1.26 Total: -33.03 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 1.88 Total: 48.56 kcal Total: -87.66 1.03 -86.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000910607754.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.006 kcal (2) G-P(sol) polarization free energy of solvation -87.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds