Wall clock time and date at job start Tue Mar 31 2020 00:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.38232 * 119.99759 * 2 1 4 4 N 1.32422 * 119.83503 * 354.53013 * 3 2 1 5 5 C 1.31840 * 121.78491 * 180.02562 * 4 3 2 6 6 C 1.50702 * 119.38919 * 179.97438 * 5 4 3 7 7 C 1.38399 * 121.22871 * 0.27494 * 5 4 3 8 8 C 1.38311 * 119.51245 * 359.45417 * 7 5 4 9 9 C 1.40038 * 118.36612 * 0.52949 * 8 7 5 10 10 C 1.47281 * 120.61789 * 179.71371 * 9 8 7 11 11 O 1.21525 * 120.00039 * 185.68851 * 10 9 8 12 12 O 1.34770 * 119.99847 * 5.68430 * 10 9 8 13 13 C 1.45200 * 116.99883 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47272 * 180.02562 * 13 12 10 15 15 C 1.52995 * 109.47601 * 179.97438 * 14 13 12 16 16 C 1.50697 * 109.47354 * 179.97438 * 15 14 13 17 17 H 1.07996 * 120.00151 * 0.02562 * 16 15 14 18 18 C 1.37877 * 119.99650 * 179.97438 * 16 15 14 19 19 N 1.31509 * 120.00640 * 0.02562 * 18 16 15 20 20 Si 1.86810 * 119.99699 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47116 * 90.00115 * 20 18 16 22 22 H 1.48498 * 109.47090 * 209.99984 * 20 18 16 23 23 H 1.48503 * 109.46859 * 330.00264 * 20 18 16 24 24 H 1.09007 * 109.46348 * 60.00017 * 1 2 3 25 25 H 1.08994 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46938 * 300.00239 * 1 2 3 27 27 H 0.96993 * 119.99883 * 180.02562 * 2 1 3 28 28 H 1.09007 * 109.46731 * 90.00034 * 6 5 4 29 29 H 1.08993 * 109.47203 * 210.00086 * 6 5 4 30 30 H 1.09001 * 109.47108 * 330.00431 * 6 5 4 31 31 H 1.07996 * 120.24140 * 179.72244 * 7 5 4 32 32 H 1.08006 * 120.81552 * 180.24139 * 8 7 5 33 33 H 1.09004 * 109.46845 * 300.00182 * 13 12 10 34 34 H 1.09002 * 109.46999 * 60.00026 * 13 12 10 35 35 H 1.08998 * 109.46721 * 300.00295 * 14 13 12 36 36 H 1.09004 * 109.47238 * 59.99377 * 14 13 12 37 37 H 1.08996 * 109.46929 * 300.00078 * 15 14 13 38 38 H 1.09010 * 109.46555 * 59.99643 * 15 14 13 39 39 H 0.96994 * 120.00546 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1562 1.1972 0.0000 4 7 1.4952 2.3394 -0.1095 5 6 2.1154 3.5028 -0.1143 6 6 1.3096 4.7699 -0.2423 7 6 3.4932 3.5820 -0.0101 8 6 4.2350 2.4211 0.1127 9 6 3.5572 1.1957 0.1157 10 6 4.2985 -0.0712 0.2374 11 8 3.7120 -1.1306 0.1352 12 8 5.6272 -0.0555 0.4621 13 6 6.2927 -1.3415 0.5703 14 6 7.7856 -1.1235 0.8240 15 6 8.4868 -2.4785 0.9387 16 6 9.9574 -2.2637 1.1880 17 1 10.3524 -1.2610 1.2581 18 6 10.7983 -3.3473 1.3277 19 7 10.3173 -4.5683 1.2429 20 14 12.6212 -3.0810 1.6374 21 1 12.8703 -3.0142 3.0999 22 1 13.3922 -4.2087 1.0551 23 1 13.0503 -1.8084 1.0036 24 1 -0.3632 0.5139 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.9500 -0.8400 -0.0004 28 1 1.0305 5.1247 0.7499 29 1 1.9062 5.5305 -0.7458 30 1 0.4092 4.5707 -0.8235 31 1 3.9851 4.5434 -0.0201 32 1 5.3109 2.4586 0.1994 33 1 5.8622 -1.9048 1.3983 34 1 6.1589 -1.8990 -0.3568 35 1 8.2163 -0.5600 -0.0037 36 1 7.9190 -0.5661 1.7512 37 1 8.0560 -3.0415 1.7667 38 1 8.3533 -3.0362 0.0117 39 1 10.9090 -5.3306 1.3408 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919138302.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:44 Heat of formation + Delta-G solvation = -62.278294 kcal Electronic energy + Delta-G solvation = -20627.919007 eV Core-core repulsion = 17342.174165 eV Total energy + Delta-G solvation = -3285.744842 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.98103 -39.60326 -36.85891 -35.74538 -34.04736 -33.24546 -31.66654 -31.46649 -28.61589 -27.22709 -26.11055 -23.74852 -22.87483 -22.42708 -21.16951 -20.35226 -17.80405 -17.40113 -17.08488 -16.58705 -16.34460 -16.09408 -15.15323 -14.83771 -14.48284 -14.36907 -14.01966 -13.90944 -13.74105 -13.02297 -12.73622 -12.63178 -12.41581 -12.31020 -12.18750 -12.14307 -11.85580 -10.98910 -10.68585 -10.66345 -10.48610 -10.47887 -10.41730 -9.86617 -9.76715 -9.73546 -9.49348 -9.17898 -8.40194 -7.94389 -6.04918 -4.08049 0.51958 1.29526 2.54105 2.80262 3.14040 3.30146 3.36385 3.39868 3.68317 4.11396 4.42349 4.54539 4.72917 4.81145 5.06733 5.14140 5.23593 5.27908 5.31132 5.31786 5.37066 5.55394 5.59016 5.61858 5.69329 5.75639 5.94212 5.99689 6.28661 6.40531 6.51693 6.76230 6.94711 6.99143 7.27347 7.58479 7.69354 7.84009 7.93319 8.05185 8.34298 8.98230 9.56372 11.06565 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.031990 B = 0.002895 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.051751 B = 9668.030372 C =10499.623413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.707 5.707 3 C 0.461 3.539 4 N -0.551 5.551 5 C 0.211 3.789 6 C -0.108 4.108 7 C -0.254 4.254 8 C 0.033 3.967 9 C -0.263 4.263 10 C 0.523 3.477 11 O -0.527 6.527 12 O -0.349 6.349 13 C 0.069 3.931 14 C -0.109 4.109 15 C 0.024 3.976 16 C -0.522 4.522 17 H 0.058 0.942 18 C 0.057 3.943 19 N -0.895 5.895 20 Si 0.895 3.105 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.273 1.273 24 H 0.058 0.942 25 H 0.072 0.928 26 H 0.056 0.944 27 H 0.427 0.573 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.139 0.861 32 H 0.150 0.850 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.279 16.534 -2.997 25.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.349 5.349 3 C 0.221 3.779 4 N -0.271 5.271 5 C 0.070 3.930 6 C -0.166 4.166 7 C -0.276 4.276 8 C 0.007 3.993 9 C -0.272 4.272 10 C 0.371 3.629 11 O -0.419 6.419 12 O -0.265 6.265 13 C -0.004 4.004 14 C -0.147 4.147 15 C -0.013 4.013 16 C -0.560 4.560 17 H 0.076 0.924 18 C -0.145 4.145 19 N -0.534 5.534 20 Si 0.723 3.277 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.198 1.198 24 H 0.077 0.923 25 H 0.091 0.909 26 H 0.075 0.925 27 H 0.277 0.723 28 H 0.102 0.898 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.157 0.843 32 H 0.167 0.833 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.038 0.962 38 H 0.038 0.962 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -20.424 15.861 -3.083 26.043 hybrid contribution 2.056 -0.485 0.267 2.129 sum -18.368 15.376 -2.816 24.119 Atomic orbital electron populations 1.21534 0.79659 1.01873 1.01974 1.45417 1.07212 1.06304 1.75935 1.18214 0.86243 0.87095 0.86311 1.67189 1.39428 0.96841 1.23617 1.21250 0.91588 0.92621 0.87496 1.20818 1.00078 0.92295 1.03362 1.21607 0.94265 0.99435 1.12337 1.21727 1.01008 0.90227 0.86321 1.19351 0.92307 0.92803 1.22727 1.20717 0.81522 0.88394 0.72287 1.90447 1.68669 1.33220 1.49604 1.86550 1.20633 1.37973 1.81339 1.23556 0.94085 0.80709 1.02068 1.21773 0.88984 1.02266 1.01640 1.19050 0.94859 0.89771 0.97616 1.21168 0.92705 0.92765 1.49351 0.92410 1.25031 0.98981 0.95169 0.95286 1.69958 1.35501 0.97845 1.50081 0.86545 0.84945 0.77816 0.78419 1.20601 1.21184 1.19789 0.92303 0.90939 0.92549 0.72341 0.89842 0.90165 0.90295 0.84338 0.83250 0.91375 0.91353 0.92085 0.92095 0.96229 0.96219 0.92871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.89 10.72 59.85 0.64 1.53 16 2 N -0.71 -9.03 5.73 -67.00 -0.38 -9.41 16 3 C 0.46 6.29 7.48 -155.20 -1.16 5.13 16 4 N -0.55 -6.77 9.46 -8.42 -0.08 -6.85 16 5 C 0.21 2.12 6.78 -82.53 -0.56 1.56 16 6 C -0.11 -0.67 10.16 36.01 0.37 -0.30 16 7 C -0.25 -2.42 9.70 -39.50 -0.38 -2.80 16 8 C 0.03 0.37 9.73 -38.88 -0.38 0.00 16 9 C -0.26 -3.68 5.91 -104.66 -0.62 -4.30 16 10 C 0.52 8.49 7.88 34.41 0.27 8.76 16 11 O -0.53 -9.19 13.47 -19.28 -0.26 -9.45 16 12 O -0.35 -5.92 9.56 -40.68 -0.39 -6.31 16 13 C 0.07 1.27 5.48 37.16 0.20 1.47 16 14 C -0.11 -2.25 5.53 -26.73 -0.15 -2.39 16 15 C 0.02 0.62 4.97 -27.89 -0.14 0.48 16 16 C -0.52 -14.66 9.11 -34.44 -0.31 -14.97 16 17 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.89 -26.82 13.29 55.43 0.74 -26.08 16 20 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.43 5.90 5.34 -40.92 -0.22 5.69 16 28 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.34 8.07 -51.93 -0.42 -0.08 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 32 H 0.15 1.54 7.71 -52.48 -0.40 1.14 16 33 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 34 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 36 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 37 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.02 0.53 8.14 -51.92 -0.42 0.10 16 39 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 336.04 15.07 5.06 5.06 Total: -1.00 -31.90 336.04 -8.31 -40.21 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -5.66 Total: 0.67 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: -2.32 Total: -4.33 kcal Atomic # 7 Polarization: -42.62 SS G_CDS: 0.27 Total: -42.35 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: -0.65 Total: -15.76 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.90 -8.31 -40.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919138302.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.070 kcal (2) G-P(sol) polarization free energy of solvation -31.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds