Wall clock time and date at job start Tue Mar 31 2020 00:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.38232 * 119.99759 * 2 1 4 4 N 1.32422 * 119.83503 * 354.53013 * 3 2 1 5 5 C 1.31840 * 121.78491 * 180.02562 * 4 3 2 6 6 C 1.50702 * 119.38919 * 179.97438 * 5 4 3 7 7 C 1.38399 * 121.22871 * 0.27494 * 5 4 3 8 8 C 1.38311 * 119.51245 * 359.45417 * 7 5 4 9 9 C 1.40038 * 118.36612 * 0.52949 * 8 7 5 10 10 C 1.47281 * 120.61789 * 179.71371 * 9 8 7 11 11 O 1.21525 * 120.00039 * 185.68851 * 10 9 8 12 12 O 1.34770 * 119.99847 * 5.68430 * 10 9 8 13 13 C 1.45200 * 116.99883 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47272 * 180.02562 * 13 12 10 15 15 C 1.52995 * 109.47601 * 179.97438 * 14 13 12 16 16 C 1.50697 * 109.47354 * 179.97438 * 15 14 13 17 17 H 1.07996 * 120.00151 * 0.02562 * 16 15 14 18 18 C 1.37877 * 119.99650 * 179.97438 * 16 15 14 19 19 N 1.31509 * 120.00640 * 0.02562 * 18 16 15 20 20 Si 1.86810 * 119.99699 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47116 * 90.00115 * 20 18 16 22 22 H 1.48498 * 109.47090 * 209.99984 * 20 18 16 23 23 H 1.48503 * 109.46859 * 330.00264 * 20 18 16 24 24 H 1.09007 * 109.46348 * 60.00017 * 1 2 3 25 25 H 1.08994 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46938 * 300.00239 * 1 2 3 27 27 H 0.96993 * 119.99883 * 180.02562 * 2 1 3 28 28 H 1.09007 * 109.46731 * 90.00034 * 6 5 4 29 29 H 1.08993 * 109.47203 * 210.00086 * 6 5 4 30 30 H 1.09001 * 109.47108 * 330.00431 * 6 5 4 31 31 H 1.07996 * 120.24140 * 179.72244 * 7 5 4 32 32 H 1.08006 * 120.81552 * 180.24139 * 8 7 5 33 33 H 1.09004 * 109.46845 * 300.00182 * 13 12 10 34 34 H 1.09002 * 109.46999 * 60.00026 * 13 12 10 35 35 H 1.08998 * 109.46721 * 300.00295 * 14 13 12 36 36 H 1.09004 * 109.47238 * 59.99377 * 14 13 12 37 37 H 1.08996 * 109.46929 * 300.00078 * 15 14 13 38 38 H 1.09010 * 109.46555 * 59.99643 * 15 14 13 39 39 H 0.96994 * 120.00546 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1562 1.1972 0.0000 4 7 1.4952 2.3394 -0.1095 5 6 2.1154 3.5028 -0.1143 6 6 1.3096 4.7699 -0.2423 7 6 3.4932 3.5820 -0.0101 8 6 4.2350 2.4211 0.1127 9 6 3.5572 1.1957 0.1157 10 6 4.2985 -0.0712 0.2374 11 8 3.7120 -1.1306 0.1352 12 8 5.6272 -0.0555 0.4621 13 6 6.2927 -1.3415 0.5703 14 6 7.7856 -1.1235 0.8240 15 6 8.4868 -2.4785 0.9387 16 6 9.9574 -2.2637 1.1880 17 1 10.3524 -1.2610 1.2581 18 6 10.7983 -3.3473 1.3277 19 7 10.3173 -4.5683 1.2429 20 14 12.6212 -3.0810 1.6374 21 1 12.8703 -3.0142 3.0999 22 1 13.3922 -4.2087 1.0551 23 1 13.0503 -1.8084 1.0036 24 1 -0.3632 0.5139 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.9500 -0.8400 -0.0004 28 1 1.0305 5.1247 0.7499 29 1 1.9062 5.5305 -0.7458 30 1 0.4092 4.5707 -0.8235 31 1 3.9851 4.5434 -0.0201 32 1 5.3109 2.4586 0.1994 33 1 5.8622 -1.9048 1.3983 34 1 6.1589 -1.8990 -0.3568 35 1 8.2163 -0.5600 -0.0037 36 1 7.9190 -0.5661 1.7512 37 1 8.0560 -3.0415 1.7667 38 1 8.3533 -3.0362 0.0117 39 1 10.9090 -5.3306 1.3408 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000919138302.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:44 Heat of formation + Delta-G solvation = -80.615539 kcal Electronic energy + Delta-G solvation = -20628.714169 eV Core-core repulsion = 17342.174165 eV Total energy + Delta-G solvation = -3286.540005 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.03725 -40.72157 -38.08964 -36.77203 -35.93340 -34.24835 -33.54566 -32.25332 -29.56017 -28.82964 -27.12725 -25.31994 -24.02699 -23.31413 -22.35558 -22.15343 -19.00207 -18.62339 -18.26299 -17.99816 -17.73294 -17.43123 -16.49319 -16.12962 -15.72045 -15.49270 -15.25922 -14.91097 -14.57813 -14.30063 -13.93176 -13.91591 -13.74190 -13.42863 -13.20680 -13.08989 -12.91601 -12.83743 -12.51910 -12.39398 -12.11668 -11.81565 -11.48592 -11.45232 -11.28323 -11.26438 -10.74247 -10.58559 -10.57959 -8.84455 -8.22426 -6.34013 -0.42665 0.43802 1.39371 1.41221 1.42868 1.52344 1.56018 2.23046 2.41099 2.78036 3.11621 3.31564 3.66426 3.75159 3.93815 3.98383 4.04260 4.24392 4.38979 4.42921 4.44867 4.62838 4.78316 4.78426 4.83542 4.86470 4.88652 4.98967 5.06078 5.11462 5.23006 5.30959 5.48317 5.57241 5.62793 5.79356 6.10971 6.17913 6.28387 6.61109 6.82030 7.10553 7.35648 8.89884 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.031990 B = 0.002895 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.051751 B = 9668.030372 C =10499.623413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.717 5.717 3 C 0.447 3.553 4 N -0.562 5.562 5 C 0.209 3.791 6 C -0.105 4.105 7 C -0.244 4.244 8 C 0.028 3.972 9 C -0.291 4.291 10 C 0.519 3.481 11 O -0.548 6.548 12 O -0.348 6.348 13 C 0.079 3.921 14 C -0.093 4.093 15 C 0.026 3.974 16 C -0.543 4.543 17 H 0.066 0.934 18 C -0.002 4.002 19 N -0.934 5.934 20 Si 0.969 3.031 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.261 1.261 24 H 0.061 0.939 25 H 0.091 0.909 26 H 0.057 0.943 27 H 0.420 0.580 28 H 0.098 0.902 29 H 0.106 0.894 30 H 0.078 0.922 31 H 0.175 0.825 32 H 0.159 0.841 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.067 0.933 37 H -0.004 1.004 38 H -0.003 1.003 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.206 19.355 -3.002 27.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.357 5.357 3 C 0.207 3.793 4 N -0.283 5.283 5 C 0.068 3.932 6 C -0.162 4.162 7 C -0.266 4.266 8 C 0.002 3.998 9 C -0.300 4.300 10 C 0.369 3.631 11 O -0.441 6.441 12 O -0.263 6.263 13 C 0.005 3.995 14 C -0.131 4.131 15 C -0.011 4.011 16 C -0.581 4.581 17 H 0.084 0.916 18 C -0.199 4.199 19 N -0.575 5.575 20 Si 0.793 3.207 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.185 1.185 24 H 0.079 0.921 25 H 0.110 0.890 26 H 0.076 0.924 27 H 0.268 0.732 28 H 0.116 0.884 29 H 0.124 0.876 30 H 0.097 0.903 31 H 0.192 0.808 32 H 0.176 0.824 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.015 0.985 38 H 0.015 0.985 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -20.377 18.715 -3.090 27.839 hybrid contribution 1.908 -1.269 0.250 2.305 sum -18.469 17.446 -2.839 25.564 Atomic orbital electron populations 1.21668 0.77992 1.03249 1.02082 1.45566 1.08413 1.05935 1.75744 1.18436 0.86338 0.87830 0.86692 1.67308 1.39623 0.97117 1.24239 1.22036 0.92535 0.93159 0.85498 1.20954 0.99947 0.90806 1.04509 1.22000 0.94063 1.00142 1.10389 1.21949 1.01665 0.90055 0.86084 1.19359 0.92568 0.92476 1.25582 1.21203 0.80941 0.89263 0.71740 1.90439 1.68810 1.34160 1.50692 1.86520 1.21433 1.36571 1.81789 1.23192 0.93044 0.81491 1.01735 1.21459 0.89967 0.99337 1.02304 1.18930 0.94756 0.91975 0.95446 1.21625 0.93969 0.93281 1.49194 0.91587 1.26016 1.04275 0.94788 0.94867 1.70094 1.37431 0.98851 1.51078 0.85389 0.78549 0.78152 0.78611 1.19722 1.20847 1.18459 0.92070 0.89036 0.92386 0.73243 0.88355 0.87558 0.90340 0.80783 0.82354 0.91795 0.91728 0.91314 0.91381 0.98513 0.98478 0.92675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.73 10.72 127.77 1.37 3.10 16 2 N -0.72 -18.51 5.73 -365.89 -2.10 -20.60 16 3 C 0.45 12.09 7.48 133.67 1.00 13.09 16 4 N -0.56 -13.13 9.46 -180.57 -1.71 -14.84 16 5 C 0.21 3.65 6.78 42.60 0.29 3.93 16 6 C -0.11 -0.93 10.16 71.24 0.72 -0.20 16 7 C -0.24 -3.93 9.70 22.33 0.22 -3.71 16 8 C 0.03 0.60 9.73 22.72 0.22 0.82 16 9 C -0.29 -8.11 5.91 -19.89 -0.12 -8.23 16 10 C 0.52 17.16 7.88 70.20 0.55 17.71 16 11 O -0.55 -19.77 13.47 19.76 0.27 -19.50 16 12 O -0.35 -11.82 9.56 -56.80 -0.54 -12.36 16 13 C 0.08 2.96 5.48 71.98 0.39 3.36 16 14 C -0.09 -3.86 5.53 30.59 0.17 -3.69 16 15 C 0.03 1.38 4.97 29.85 0.15 1.53 16 16 C -0.54 -30.69 9.11 25.60 0.23 -30.45 16 17 H 0.07 3.54 7.74 -2.91 -0.02 3.51 16 18 C 0.00 -0.10 5.46 84.66 0.46 0.37 16 19 N -0.93 -57.00 13.29 21.45 0.28 -56.72 16 20 Si 0.97 43.94 29.54 68.60 2.03 45.97 16 21 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 22 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 23 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 24 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 25 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.06 1.03 8.14 -2.39 -0.02 1.02 16 27 H 0.42 12.01 5.34 -94.24 -0.50 11.50 16 28 H 0.10 0.65 8.14 -2.38 -0.02 0.63 16 29 H 0.11 0.42 8.07 -2.39 -0.02 0.40 16 30 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.17 1.51 8.06 -2.91 -0.02 1.49 16 32 H 0.16 3.02 7.71 -2.91 -0.02 3.00 16 33 H 0.06 2.44 8.14 -2.38 -0.02 2.42 16 34 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 35 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 36 H 0.07 2.71 8.14 -2.38 -0.02 2.69 16 37 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 38 H 0.00 -0.18 8.14 -2.38 -0.02 -0.20 16 39 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -69.65 336.04 4.44 -65.21 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: 0.55 Total: 15.21 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: 5.66 Total: -2.38 kcal Atomic # 7 Polarization: -88.64 SS G_CDS: -3.52 Total: -92.15 kcal Atomic # 8 Polarization: -31.58 SS G_CDS: -0.28 Total: -31.86 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -69.65 4.44 -65.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919138302.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.401 kcal (2) G-P(sol) polarization free energy of solvation -69.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds