Wall clock time and date at job start Tue Mar 31 2020 00:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34518 * 125.78578 * 2 1 4 4 C 1.41385 * 106.83835 * 180.02562 * 3 2 1 5 5 C 1.34510 * 106.84199 * 359.97438 * 4 3 2 6 6 C 1.50705 * 125.78840 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.46653 * 90.00999 * 6 5 4 8 8 O 1.21276 * 120.00138 * 359.97438 * 7 6 5 9 9 N 1.34773 * 119.99701 * 180.02562 * 7 6 5 10 10 C 1.47025 * 125.65008 * 359.95176 * 9 7 6 11 11 C 1.54320 * 107.27272 * 181.09975 * 10 9 7 12 12 C 1.55165 * 102.94391 * 22.19076 * 11 10 9 13 13 H 1.08997 * 111.03288 * 82.58491 * 12 11 10 14 14 N 1.46490 * 111.00455 * 206.42503 * 12 11 10 15 15 C 1.36935 * 120.00121 * 267.19151 * 14 12 11 16 16 H 1.07997 * 120.00139 * 0.02562 * 15 14 12 17 17 C 1.38816 * 120.00401 * 180.02562 * 15 14 12 18 18 N 1.31624 * 119.99569 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00172 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47055 * 180.02562 * 19 17 15 21 21 H 1.48505 * 109.46653 * 299.99639 * 19 17 15 22 22 H 1.48495 * 109.47483 * 60.00002 * 19 17 15 23 23 C 1.47426 * 125.64886 * 179.97438 * 9 7 6 24 24 O 1.34295 * 125.79573 * 180.34067 * 2 1 3 25 25 H 1.08997 * 109.46896 * 90.00517 * 1 2 3 26 26 H 1.09006 * 109.46685 * 210.00563 * 1 2 3 27 27 H 1.09001 * 109.47537 * 330.00046 * 1 2 3 28 28 H 1.08003 * 126.58273 * 0.02562 * 3 2 1 29 29 H 1.08005 * 126.57362 * 180.02562 * 4 3 2 30 30 H 1.08999 * 109.47280 * 330.00882 * 6 5 4 31 31 H 1.08996 * 109.46959 * 210.00599 * 6 5 4 32 32 H 1.09003 * 109.87949 * 300.51187 * 10 9 7 33 33 H 1.09001 * 109.88251 * 61.67811 * 10 9 7 34 34 H 1.09003 * 110.72341 * 263.83003 * 11 10 9 35 35 H 1.08999 * 110.72248 * 140.55556 * 11 10 9 36 36 H 0.97000 * 120.00577 * 87.19751 * 14 12 11 37 37 H 0.97001 * 119.99885 * 359.97438 * 18 17 15 38 38 H 1.09003 * 110.36681 * 36.98889 * 23 9 7 39 39 H 1.09002 * 110.36411 * 274.67210 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6308 0.6321 -0.0006 5 6 3.5814 -0.7121 -0.0004 6 6 4.7707 -1.6377 -0.0014 7 6 5.1682 -1.9461 1.4192 8 8 4.5473 -1.4617 2.3414 9 7 6.2144 -2.7596 1.6646 10 6 7.0504 -3.4114 0.6459 11 6 8.1002 -4.2627 1.3908 12 6 7.4423 -4.4905 2.7775 13 1 6.7351 -5.3192 2.7436 14 7 8.4574 -4.7120 3.8102 15 6 8.8499 -5.9862 4.1224 16 1 8.4114 -6.8279 3.6070 17 6 9.8114 -6.1962 5.1014 18 7 10.3455 -5.1705 5.7299 19 14 10.3473 -7.9344 5.5267 20 1 11.3767 -7.8874 6.5959 21 1 9.1747 -8.7112 6.0030 22 1 10.9159 -8.5865 4.3198 23 6 6.7098 -3.1434 2.9990 24 8 2.2925 -1.0893 -0.0065 25 1 -0.3633 -0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5140 27 1 -0.3634 0.8900 0.5138 28 1 1.9664 2.1205 0.0004 29 1 4.5211 1.2436 -0.0004 30 1 5.6036 -1.1586 -0.5159 31 1 4.5103 -2.5632 -0.5149 32 1 6.4341 -4.0518 0.0149 33 1 7.5490 -2.6570 0.0373 34 1 9.0375 -3.7159 1.4939 35 1 8.2604 -5.2118 0.8794 36 1 8.8515 -3.9561 4.2730 37 1 10.0674 -4.2678 5.5088 38 1 5.8767 -3.2737 3.6899 39 1 7.4030 -2.3920 3.3769 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968438954.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:18:31 Heat of formation + Delta-G solvation = -30.114866 kcal Electronic energy + Delta-G solvation = -20963.442849 eV Core-core repulsion = 17679.092718 eV Total energy + Delta-G solvation = -3284.350131 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.57932 -41.11668 -38.83503 -36.28956 -34.23274 -34.04257 -33.27782 -31.22980 -30.79791 -29.06284 -26.26180 -25.34096 -24.12803 -22.78646 -21.87018 -21.30079 -20.36098 -19.53238 -18.44155 -17.68076 -17.40793 -17.05945 -16.71298 -16.11200 -15.88099 -15.49829 -15.21964 -14.65829 -14.42123 -14.30835 -13.87303 -13.77924 -13.77250 -13.68776 -13.49774 -13.24038 -13.01924 -12.79687 -12.56720 -12.48128 -12.41416 -11.88332 -11.73658 -11.32422 -11.15282 -10.95197 -10.82837 -9.78255 -9.24947 -9.17571 -8.40785 -5.36998 0.65328 1.46872 1.55044 1.60069 1.69608 1.83719 1.85832 2.08948 2.71661 3.33054 3.44604 3.57122 3.60850 3.82827 3.93664 4.01563 4.09707 4.12291 4.20046 4.30012 4.36975 4.38559 4.56160 4.62106 4.69553 4.76645 4.83398 4.88547 4.90500 5.04169 5.09999 5.18552 5.26503 5.33635 5.58890 5.62188 6.18704 6.41735 6.47002 6.98812 7.04228 7.93149 8.04823 9.10672 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.045602 B = 0.002887 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.866119 B = 9695.241728 C = 9783.053720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.027 4.027 3 C -0.227 4.227 4 C -0.205 4.205 5 C -0.020 4.020 6 C -0.044 4.044 7 C 0.522 3.478 8 O -0.588 6.588 9 N -0.611 5.611 10 C 0.104 3.896 11 C -0.144 4.144 12 C 0.169 3.831 13 H 0.061 0.939 14 N -0.741 5.741 15 C -0.331 4.331 16 H 0.072 0.928 17 C -0.104 4.104 18 N -0.976 5.976 19 Si 1.128 2.872 20 H -0.296 1.296 21 H -0.279 1.279 22 H -0.273 1.273 23 C 0.106 3.894 24 O -0.194 6.194 25 H 0.099 0.901 26 H 0.075 0.925 27 H 0.105 0.895 28 H 0.168 0.832 29 H 0.160 0.840 30 H 0.160 0.840 31 H 0.137 0.863 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.063 0.937 35 H 0.086 0.914 36 H 0.361 0.639 37 H 0.244 0.756 38 H 0.053 0.947 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.098 9.173 -19.015 25.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.076 4.076 3 C -0.246 4.246 4 C -0.224 4.224 5 C -0.070 4.070 6 C -0.082 4.082 7 C 0.313 3.687 8 O -0.468 6.468 9 N -0.345 5.345 10 C -0.018 4.018 11 C -0.185 4.185 12 C 0.059 3.941 13 H 0.079 0.921 14 N -0.382 5.382 15 C -0.462 4.462 16 H 0.090 0.910 17 C -0.295 4.295 18 N -0.623 5.623 19 Si 0.953 3.047 20 H -0.222 1.222 21 H -0.206 1.206 22 H -0.199 1.199 23 C -0.018 4.018 24 O -0.092 6.092 25 H 0.118 0.882 26 H 0.094 0.906 27 H 0.124 0.876 28 H 0.186 0.814 29 H 0.177 0.823 30 H 0.177 0.823 31 H 0.155 0.845 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.082 0.918 35 H 0.104 0.896 36 H 0.193 0.807 37 H 0.054 0.946 38 H 0.072 0.928 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.692 8.063 -17.708 24.381 hybrid contribution -0.558 1.507 -0.161 1.615 sum -15.250 9.570 -17.869 25.366 Atomic orbital electron populations 1.20482 0.82551 1.04936 1.04844 1.23233 0.95640 0.83793 1.04967 1.21897 0.92467 1.00476 1.09726 1.21861 0.99306 0.93920 1.07351 1.21886 0.82948 0.94676 1.07487 1.20166 0.93897 1.01390 0.92785 1.20821 0.78305 0.77353 0.92261 1.90719 1.54382 1.53412 1.48274 1.48477 1.30564 1.47031 1.08399 1.22342 0.92254 0.96877 0.90301 1.23198 0.98076 1.00464 0.96767 1.21404 0.89920 0.93746 0.89041 0.92083 1.42431 1.46557 1.04886 1.44350 1.20368 1.20755 0.85655 1.19431 0.90986 1.27233 0.97243 1.08872 0.96118 1.70999 1.46968 0.98746 1.45620 0.82623 0.75958 0.69873 0.76263 1.22195 1.20567 1.19864 1.22258 0.97516 0.96770 0.85299 1.83904 1.16894 1.36373 1.71979 0.88209 0.90630 0.87600 0.81419 0.82279 0.82297 0.84491 0.88220 0.88159 0.91839 0.89564 0.80704 0.94550 0.92806 0.92521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.93 10.42 71.24 0.74 -0.19 16 2 C -0.03 -0.59 7.32 24.83 0.18 -0.41 16 3 C -0.23 -4.93 10.81 22.19 0.24 -4.69 16 4 C -0.21 -4.84 10.81 22.19 0.24 -4.60 16 5 C -0.02 -0.50 5.81 24.83 0.14 -0.36 16 6 C -0.04 -0.84 5.43 29.10 0.16 -0.68 16 7 C 0.52 15.40 7.84 87.66 0.69 16.09 16 8 O -0.59 -23.55 16.29 -3.02 -0.05 -23.60 16 9 N -0.61 -17.32 3.33 -811.75 -2.70 -20.02 16 10 C 0.10 2.13 6.49 86.73 0.56 2.70 16 11 C -0.14 -4.21 6.65 31.78 0.21 -4.00 16 12 C 0.17 6.44 3.71 46.39 0.17 6.61 16 13 H 0.06 2.41 8.09 -2.39 -0.02 2.39 16 14 N -0.74 -36.45 5.24 -316.35 -1.66 -38.11 16 15 C -0.33 -18.07 9.96 84.03 0.84 -17.24 16 16 H 0.07 3.78 7.83 -2.91 -0.02 3.76 16 17 C -0.10 -5.92 5.50 84.86 0.47 -5.45 16 18 N -0.98 -60.76 13.70 21.65 0.30 -60.46 16 19 Si 1.13 50.97 29.92 68.60 2.05 53.03 16 20 H -0.30 -13.81 7.11 99.48 0.71 -13.11 16 21 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 22 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 23 C 0.11 3.82 6.55 86.86 0.57 4.39 16 24 O -0.19 -5.26 10.65 -2.39 -0.03 -5.29 16 25 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 27 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.17 2.68 8.06 -2.91 -0.02 2.66 16 29 H 0.16 3.12 8.06 -2.91 -0.02 3.09 16 30 H 0.16 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.14 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.36 18.77 6.59 -92.71 -0.61 18.16 16 37 H 0.24 15.16 6.77 -92.71 -0.63 14.54 16 38 H 0.05 2.15 8.04 -2.39 -0.02 2.13 16 39 H 0.06 2.14 8.00 -2.39 -0.02 2.12 16 Total: -1.00 -78.16 332.46 3.71 -74.46 By element: Atomic # 1 Polarization: 27.24 SS G_CDS: 0.58 Total: 27.82 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: 5.21 Total: -7.82 kcal Atomic # 7 Polarization: -114.53 SS G_CDS: -4.06 Total: -118.59 kcal Atomic # 8 Polarization: -28.81 SS G_CDS: -0.07 Total: -28.89 kcal Atomic # 14 Polarization: 50.97 SS G_CDS: 2.05 Total: 53.03 kcal Total: -78.16 3.71 -74.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968438954.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.342 kcal (2) G-P(sol) polarization free energy of solvation -78.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds