Wall clock time and date at job start Tue Mar 31 2020 00:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.33649 * 125.80022 * 2 1 4 4 C 1.34217 * 110.90820 * 179.97438 * 3 2 1 5 5 C 1.34183 * 109.12293 * 359.75011 * 4 3 2 6 6 C 1.36418 * 125.79752 * 179.97438 * 2 1 3 7 7 C 1.47369 * 127.19421 * 359.96764 * 6 2 1 8 8 O 1.21608 * 120.00436 * 0.02562 * 7 6 2 9 9 N 1.34783 * 119.99949 * 179.97438 * 7 6 2 10 10 C 1.46500 * 119.99869 * 180.02562 * 9 7 6 11 11 H 1.09003 * 109.47194 * 35.00352 * 10 9 7 12 12 C 1.52999 * 109.47087 * 274.99848 * 10 9 7 13 13 C 1.53003 * 109.47163 * 155.00347 * 10 9 7 14 14 C 1.53486 * 114.20850 * 180.02562 * 13 10 9 15 15 N 1.47064 * 87.98715 * 87.51930 * 14 13 10 16 16 C 1.36944 * 136.05968 * 207.08932 * 15 14 13 17 17 H 1.08003 * 119.99220 * 7.55219 * 16 15 14 18 18 C 1.38804 * 120.00270 * 187.55676 * 16 15 14 19 19 N 1.31616 * 120.00491 * 174.37770 * 18 16 15 20 20 Si 1.86810 * 119.99801 * 354.37977 * 18 16 15 21 21 H 1.48499 * 109.46858 * 174.95062 * 20 18 16 22 22 H 1.48498 * 109.46907 * 294.94544 * 20 18 16 23 23 H 1.48495 * 109.47036 * 54.94600 * 20 18 16 24 24 C 1.47066 * 87.88390 * 27.34185 * 15 14 13 25 25 H 1.09003 * 109.47012 * 270.00004 * 1 2 3 26 26 H 1.09003 * 109.47104 * 30.00075 * 1 2 3 27 27 H 1.08999 * 109.47291 * 150.00057 * 1 2 3 28 28 H 1.08000 * 125.44279 * 179.97438 * 4 3 2 29 29 H 1.07999 * 127.02784 * 180.26086 * 5 4 3 30 30 H 0.96997 * 119.99750 * 0.02562 * 9 7 6 31 31 H 1.08994 * 109.47561 * 300.00057 * 12 10 9 32 32 H 1.09000 * 109.46986 * 60.00526 * 12 10 9 33 33 H 1.09004 * 109.47074 * 180.02562 * 12 10 9 34 34 H 1.08998 * 113.41116 * 46.79441 * 13 10 9 35 35 H 1.09003 * 113.46770 * 332.73878 * 14 13 10 36 36 H 1.09004 * 113.52153 * 202.31032 * 14 13 10 37 37 H 0.97003 * 119.99848 * 354.81683 * 19 18 16 38 38 H 1.08996 * 113.46631 * 87.44126 * 24 15 14 39 39 H 1.09001 * 113.46561 * 217.88042 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2888 1.0840 0.0000 4 6 3.5859 0.7390 0.0006 5 6 3.6849 -0.5991 0.0065 6 6 2.3050 -1.1065 0.0005 7 6 1.8739 -2.5157 0.0018 8 8 0.6890 -2.7892 0.0021 9 7 2.7930 -3.5016 0.0016 10 6 2.3644 -4.9025 0.0023 11 1 1.4529 -5.0039 -0.5866 12 6 2.0959 -5.3529 1.4396 13 6 3.4651 -5.7729 -0.6075 14 6 3.1272 -7.2691 -0.6610 15 7 2.4884 -7.0254 -1.9630 16 6 1.4846 -7.6044 -2.6927 17 1 0.8820 -8.3871 -2.2559 18 6 1.2417 -7.1856 -3.9935 19 7 0.3529 -7.8150 -4.7325 20 14 2.1765 -5.7284 -4.6955 21 1 1.8273 -5.5606 -6.1291 22 1 1.8087 -4.4984 -3.9492 23 1 3.6363 -5.9681 -4.5662 24 6 3.4064 -5.8900 -2.1395 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3634 -0.8900 -0.5138 28 1 4.4173 1.4284 0.0003 29 1 4.5927 -1.1841 0.0123 30 1 3.7381 -3.2835 0.0010 31 1 3.0074 -5.2516 2.0286 32 1 1.3117 -4.7329 1.8741 33 1 1.7774 -6.3954 1.4402 34 1 4.4583 -5.5523 -0.2164 35 1 2.4279 -7.5841 0.1135 36 1 4.0057 -7.9116 -0.7219 37 1 -0.0777 -8.6164 -4.3958 38 1 4.3589 -6.1680 -2.5904 39 1 2.9447 -5.0300 -2.6247 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969269897.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:06 Heat of formation + Delta-G solvation = 37.115383 kcal Electronic energy + Delta-G solvation = -21910.504980 eV Core-core repulsion = 18629.070171 eV Total energy + Delta-G solvation = -3281.434809 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.68545 -39.73240 -38.40609 -34.79212 -33.18256 -32.35515 -31.95726 -30.34900 -27.79349 -27.02619 -25.41241 -24.10927 -22.99767 -21.66687 -20.69998 -19.97875 -18.88410 -17.82488 -17.35310 -16.47191 -16.21911 -15.87587 -15.07854 -14.92641 -14.46048 -14.03471 -13.74832 -13.37984 -13.24240 -13.16450 -13.05347 -13.01137 -12.99074 -12.19886 -11.94931 -11.83702 -11.43980 -11.23512 -10.94422 -10.57113 -10.26571 -10.19101 -9.93894 -9.72554 -9.16498 -9.08359 -8.90058 -8.82324 -8.63065 -7.11189 -6.23623 -3.17498 1.31803 1.91559 2.66632 3.37067 3.44218 3.49385 3.49863 3.68320 4.37328 4.64699 4.71660 4.76112 4.79676 4.97104 5.11604 5.16522 5.37018 5.42043 5.49488 5.55501 5.64317 5.70756 5.75925 5.88178 5.96747 6.06674 6.09482 6.13932 6.22916 6.30389 6.34355 6.48447 6.54488 6.71749 6.88225 6.95002 7.17039 7.73065 8.29350 8.43927 9.03256 9.55771 10.42003 11.26429 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019243 B = 0.005184 C = 0.004761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.701580 B = 5400.450933 C = 5880.258866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.076 3.924 3 O -0.178 6.178 4 C -0.043 4.043 5 C -0.187 4.187 6 C -0.243 4.243 7 C 0.587 3.413 8 O -0.537 6.537 9 N -0.715 5.715 10 C 0.167 3.833 11 H 0.103 0.897 12 C -0.156 4.156 13 C -0.141 4.141 14 C 0.130 3.870 15 N -0.626 5.626 16 C -0.302 4.302 17 H 0.083 0.917 18 C -0.024 4.024 19 N -0.936 5.936 20 Si 1.068 2.932 21 H -0.296 1.296 22 H -0.292 1.292 23 H -0.289 1.289 24 C 0.099 3.901 25 H 0.088 0.912 26 H 0.076 0.924 27 H 0.112 0.888 28 H 0.207 0.793 29 H 0.156 0.844 30 H 0.395 0.605 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.050 0.950 36 H 0.040 0.960 37 H 0.260 0.740 38 H 0.045 0.955 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.995 16.523 13.198 22.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.023 3.977 3 O -0.075 6.075 4 C -0.109 4.109 5 C -0.206 4.206 6 C -0.247 4.247 7 C 0.375 3.625 8 O -0.416 6.416 9 N -0.365 5.365 10 C 0.063 3.937 11 H 0.121 0.879 12 C -0.214 4.214 13 C -0.161 4.161 14 C 0.003 3.997 15 N -0.355 5.355 16 C -0.428 4.428 17 H 0.101 0.899 18 C -0.222 4.222 19 N -0.578 5.578 20 Si 0.901 3.099 21 H -0.223 1.223 22 H -0.220 1.220 23 H -0.216 1.216 24 C -0.026 4.026 25 H 0.106 0.894 26 H 0.095 0.905 27 H 0.130 0.870 28 H 0.223 0.777 29 H 0.174 0.826 30 H 0.229 0.771 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.068 0.932 36 H 0.057 0.943 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.956 17.440 11.716 22.465 hybrid contribution 0.892 -1.143 1.274 1.930 sum 8.847 16.297 12.990 22.641 Atomic orbital electron populations 1.20635 0.83685 1.05287 1.04335 1.22849 0.94162 0.83057 0.97632 1.83759 1.17137 1.35068 1.71502 1.23812 0.83581 0.96358 1.07109 1.22876 0.96707 0.94547 1.06514 1.21252 0.93264 0.94127 1.16068 1.17164 0.85664 0.83609 0.76077 1.90775 1.16534 1.83921 1.50365 1.45868 1.09267 1.06300 1.75053 1.20649 0.98620 0.77886 0.96529 0.87864 1.22107 1.01250 1.02064 0.96012 1.23202 0.97307 0.97749 0.97876 1.22358 0.95618 0.91905 0.89781 1.46018 1.36459 1.33233 1.19811 1.20145 1.07658 1.19473 0.95508 0.89948 1.25648 1.00301 1.04296 0.91970 1.70909 1.29011 1.19841 1.38039 0.83748 0.75223 0.75636 0.75301 1.22317 1.22049 1.21574 1.22818 0.94186 0.92280 0.93325 0.89396 0.90473 0.87011 0.77688 0.82601 0.77093 0.92994 0.92481 0.91168 0.90541 0.93225 0.94272 0.92964 0.93755 0.92915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.92 9.89 36.01 0.36 -0.56 16 2 C 0.08 0.96 7.37 -34.96 -0.26 0.70 16 3 O -0.18 -2.00 10.52 7.66 0.08 -1.92 16 4 C -0.04 -0.38 12.03 29.30 0.35 -0.03 16 5 C -0.19 -1.91 10.60 -37.45 -0.40 -2.30 16 6 C -0.24 -3.32 6.31 -103.28 -0.65 -3.97 16 7 C 0.59 9.64 7.78 -12.54 -0.10 9.54 16 8 O -0.54 -10.60 14.51 5.27 0.08 -10.53 16 9 N -0.71 -10.53 5.07 -54.90 -0.28 -10.81 16 10 C 0.17 2.82 2.43 -67.93 -0.16 2.66 16 11 H 0.10 2.27 7.36 -51.93 -0.38 1.89 16 12 C -0.16 -2.27 9.29 37.16 0.35 -1.93 16 13 C -0.14 -2.36 3.73 -89.97 -0.34 -2.69 16 14 C 0.13 2.50 8.08 -8.52 -0.07 2.44 16 15 N -0.63 -15.53 3.49 -184.63 -0.64 -16.17 16 16 C -0.30 -8.89 11.08 -15.06 -0.17 -9.05 16 17 H 0.08 2.55 8.06 -52.48 -0.42 2.13 16 18 C -0.02 -0.72 5.50 -17.43 -0.10 -0.82 16 19 N -0.94 -30.37 13.70 55.49 0.76 -29.61 16 20 Si 1.07 27.95 25.16 -169.99 -4.28 23.68 16 21 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 22 H -0.29 -7.47 6.51 56.52 0.37 -7.10 16 23 H -0.29 -6.97 6.20 56.52 0.35 -6.62 16 24 C 0.10 2.11 5.24 -8.38 -0.04 2.06 16 25 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 26 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.11 1.49 6.49 -51.93 -0.34 1.15 16 28 H 0.21 0.93 8.06 -52.49 -0.42 0.51 16 29 H 0.16 1.17 7.74 -52.49 -0.41 0.76 16 30 H 0.40 4.54 7.77 -40.82 -0.32 4.22 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.07 1.03 6.50 -51.93 -0.34 0.70 16 34 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.05 0.92 6.43 -51.93 -0.33 0.59 16 36 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.26 8.32 8.73 -40.82 -0.36 7.97 16 38 H 0.04 0.91 7.66 -51.93 -0.40 0.51 16 39 H 0.05 1.20 4.71 -51.93 -0.24 0.96 16 LS Contribution 319.96 15.07 4.82 4.82 Total: -1.00 -36.02 319.96 -6.06 -42.08 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -5.38 Total: 2.40 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: -1.23 Total: -3.94 kcal Atomic # 7 Polarization: -56.43 SS G_CDS: -0.16 Total: -56.59 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: 0.16 Total: -12.45 kcal Atomic # 14 Polarization: 27.95 SS G_CDS: -4.28 Total: 23.68 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -36.02 -6.06 -42.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969269897.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.196 kcal (2) G-P(sol) polarization free energy of solvation -36.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds