Wall clock time and date at job start Tue Mar 31 2020 00:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.33649 * 125.80022 * 2 1 4 4 C 1.34217 * 110.90820 * 179.97438 * 3 2 1 5 5 C 1.34183 * 109.12293 * 359.75011 * 4 3 2 6 6 C 1.36418 * 125.79752 * 179.97438 * 2 1 3 7 7 C 1.47369 * 127.19421 * 359.96764 * 6 2 1 8 8 O 1.21608 * 120.00436 * 0.02562 * 7 6 2 9 9 N 1.34783 * 119.99949 * 179.97438 * 7 6 2 10 10 C 1.46500 * 119.99869 * 180.02562 * 9 7 6 11 11 H 1.09003 * 109.47194 * 35.00352 * 10 9 7 12 12 C 1.52999 * 109.47087 * 274.99848 * 10 9 7 13 13 C 1.53003 * 109.47163 * 155.00347 * 10 9 7 14 14 C 1.53486 * 114.20850 * 180.02562 * 13 10 9 15 15 N 1.47064 * 87.98715 * 87.51930 * 14 13 10 16 16 C 1.36944 * 136.05968 * 207.08932 * 15 14 13 17 17 H 1.08003 * 119.99220 * 7.55219 * 16 15 14 18 18 C 1.38804 * 120.00270 * 187.55676 * 16 15 14 19 19 N 1.31616 * 120.00491 * 174.37770 * 18 16 15 20 20 Si 1.86810 * 119.99801 * 354.37977 * 18 16 15 21 21 H 1.48499 * 109.46858 * 174.95062 * 20 18 16 22 22 H 1.48498 * 109.46907 * 294.94544 * 20 18 16 23 23 H 1.48495 * 109.47036 * 54.94600 * 20 18 16 24 24 C 1.47066 * 87.88390 * 27.34185 * 15 14 13 25 25 H 1.09003 * 109.47012 * 270.00004 * 1 2 3 26 26 H 1.09003 * 109.47104 * 30.00075 * 1 2 3 27 27 H 1.08999 * 109.47291 * 150.00057 * 1 2 3 28 28 H 1.08000 * 125.44279 * 179.97438 * 4 3 2 29 29 H 1.07999 * 127.02784 * 180.26086 * 5 4 3 30 30 H 0.96997 * 119.99750 * 0.02562 * 9 7 6 31 31 H 1.08994 * 109.47561 * 300.00057 * 12 10 9 32 32 H 1.09000 * 109.46986 * 60.00526 * 12 10 9 33 33 H 1.09004 * 109.47074 * 180.02562 * 12 10 9 34 34 H 1.08998 * 113.41116 * 46.79441 * 13 10 9 35 35 H 1.09003 * 113.46770 * 332.73878 * 14 13 10 36 36 H 1.09004 * 113.52153 * 202.31032 * 14 13 10 37 37 H 0.97003 * 119.99848 * 354.81683 * 19 18 16 38 38 H 1.08996 * 113.46631 * 87.44126 * 24 15 14 39 39 H 1.09001 * 113.46561 * 217.88042 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2888 1.0840 0.0000 4 6 3.5859 0.7390 0.0006 5 6 3.6849 -0.5991 0.0065 6 6 2.3050 -1.1065 0.0005 7 6 1.8739 -2.5157 0.0018 8 8 0.6890 -2.7892 0.0021 9 7 2.7930 -3.5016 0.0016 10 6 2.3644 -4.9025 0.0023 11 1 1.4529 -5.0039 -0.5866 12 6 2.0959 -5.3529 1.4396 13 6 3.4651 -5.7729 -0.6075 14 6 3.1272 -7.2691 -0.6610 15 7 2.4884 -7.0254 -1.9630 16 6 1.4846 -7.6044 -2.6927 17 1 0.8820 -8.3871 -2.2559 18 6 1.2417 -7.1856 -3.9935 19 7 0.3529 -7.8150 -4.7325 20 14 2.1765 -5.7284 -4.6955 21 1 1.8273 -5.5606 -6.1291 22 1 1.8087 -4.4984 -3.9492 23 1 3.6363 -5.9681 -4.5662 24 6 3.4064 -5.8900 -2.1395 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3634 -0.8900 -0.5138 28 1 4.4173 1.4284 0.0003 29 1 4.5927 -1.1841 0.0123 30 1 3.7381 -3.2835 0.0010 31 1 3.0074 -5.2516 2.0286 32 1 1.3117 -4.7329 1.8741 33 1 1.7774 -6.3954 1.4402 34 1 4.4583 -5.5523 -0.2164 35 1 2.4279 -7.5841 0.1135 36 1 4.0057 -7.9116 -0.7219 37 1 -0.0777 -8.6164 -4.3958 38 1 4.3589 -6.1680 -2.5904 39 1 2.9447 -5.0300 -2.6247 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969269897.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:05 Heat of formation + Delta-G solvation = 9.850441 kcal Electronic energy + Delta-G solvation = -21911.687277 eV Core-core repulsion = 18629.070171 eV Total energy + Delta-G solvation = -3282.617105 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.51617 -41.13615 -39.87516 -36.22246 -34.56956 -34.05690 -32.83177 -31.68588 -29.64478 -27.93524 -26.98675 -25.51165 -24.37470 -23.04172 -21.82261 -21.25043 -20.31882 -19.45053 -18.74020 -17.60952 -17.29593 -17.19782 -16.68271 -16.09104 -15.86450 -15.66289 -15.26114 -15.11305 -14.56797 -14.43129 -14.13639 -13.86581 -13.75804 -13.63555 -13.37488 -13.13961 -12.84283 -12.70900 -12.67650 -12.24795 -12.06111 -11.70651 -11.31970 -11.07432 -11.02872 -10.86048 -10.81828 -10.11404 -9.50823 -9.19963 -8.61807 -5.46148 0.33435 1.16634 1.31036 1.42794 1.60850 1.83402 2.23350 2.35157 2.50399 3.03217 3.20403 3.43614 3.63513 3.77028 3.83760 3.92514 4.33246 4.34543 4.39424 4.53464 4.58334 4.60546 4.65329 4.67043 4.72230 4.75472 4.76547 4.85955 4.90863 5.10900 5.19413 5.20738 5.27480 5.38479 5.42872 5.60354 5.95658 6.05564 6.60366 6.70644 7.27100 7.33502 8.28892 8.90258 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019243 B = 0.005184 C = 0.004761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.701580 B = 5400.450933 C = 5880.258866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.064 3.936 3 O -0.181 6.181 4 C -0.030 4.030 5 C -0.194 4.194 6 C -0.271 4.271 7 C 0.579 3.421 8 O -0.585 6.585 9 N -0.701 5.701 10 C 0.169 3.831 11 H 0.043 0.957 12 C -0.147 4.147 13 C -0.107 4.107 14 C 0.127 3.873 15 N -0.663 5.663 16 C -0.283 4.283 17 H 0.049 0.951 18 C -0.088 4.088 19 N -0.976 5.976 20 Si 1.110 2.890 21 H -0.306 1.306 22 H -0.291 1.291 23 H -0.250 1.250 24 C 0.088 3.912 25 H 0.098 0.902 26 H 0.099 0.901 27 H 0.082 0.918 28 H 0.253 0.747 29 H 0.185 0.815 30 H 0.415 0.585 31 H 0.088 0.912 32 H 0.041 0.959 33 H 0.064 0.936 34 H 0.137 0.863 35 H 0.051 0.949 36 H 0.067 0.933 37 H 0.246 0.754 38 H 0.067 0.933 39 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.182 18.849 14.948 27.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.010 3.990 3 O -0.078 6.078 4 C -0.094 4.094 5 C -0.213 4.213 6 C -0.275 4.275 7 C 0.369 3.631 8 O -0.467 6.467 9 N -0.353 5.353 10 C 0.065 3.935 11 H 0.061 0.939 12 C -0.205 4.205 13 C -0.127 4.127 14 C 0.001 3.999 15 N -0.393 5.393 16 C -0.411 4.411 17 H 0.067 0.933 18 C -0.280 4.280 19 N -0.622 5.622 20 Si 0.937 3.063 21 H -0.234 1.234 22 H -0.219 1.219 23 H -0.175 1.175 24 C -0.036 4.036 25 H 0.116 0.884 26 H 0.117 0.883 27 H 0.100 0.900 28 H 0.269 0.731 29 H 0.203 0.797 30 H 0.253 0.747 31 H 0.107 0.893 32 H 0.061 0.939 33 H 0.083 0.917 34 H 0.154 0.846 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.055 0.945 38 H 0.084 0.916 39 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 12.231 19.769 13.529 26.897 hybrid contribution -0.414 -1.862 0.866 2.095 sum 11.817 17.907 14.395 25.836 Atomic orbital electron populations 1.20586 0.83541 1.04855 1.04889 1.23025 0.94770 0.83479 0.97701 1.83783 1.18244 1.34437 1.71289 1.24757 0.83350 0.96916 1.04406 1.23195 0.95845 0.95297 1.06955 1.21259 0.95727 0.92610 1.17923 1.17664 0.85206 0.85047 0.75204 1.90754 1.18598 1.84803 1.52511 1.45659 1.10162 1.05050 1.74400 1.20409 0.96589 0.79455 0.97083 0.93909 1.22011 1.02545 1.01232 0.94687 1.23013 0.99717 0.95492 0.94449 1.22654 0.95960 0.94329 0.86925 1.46138 1.36675 1.34810 1.21650 1.20012 1.08163 1.17395 0.95507 0.93277 1.26925 1.01203 1.06736 0.93093 1.71001 1.31401 1.20536 1.39251 0.83238 0.76361 0.72810 0.73867 1.23392 1.21938 1.17495 1.23096 0.93629 0.90166 0.96716 0.88386 0.88279 0.89951 0.73141 0.79727 0.74734 0.89298 0.93949 0.91680 0.84581 0.93073 0.91514 0.94518 0.91583 0.94747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.84 9.89 71.24 0.70 -1.14 16 2 C 0.06 1.55 7.37 25.26 0.19 1.74 16 3 O -0.18 -3.59 10.52 4.48 0.05 -3.55 16 4 C -0.03 -0.40 12.03 66.89 0.80 0.41 16 5 C -0.19 -3.23 10.60 23.65 0.25 -2.97 16 6 C -0.27 -7.02 6.31 -18.99 -0.12 -7.14 16 7 C 0.58 18.88 7.78 86.65 0.67 19.55 16 8 O -0.58 -24.18 14.51 -4.06 -0.06 -24.24 16 9 N -0.70 -19.15 5.07 -445.84 -2.26 -21.41 16 10 C 0.17 5.47 2.43 44.99 0.11 5.58 16 11 H 0.04 1.93 7.36 -2.39 -0.02 1.92 16 12 C -0.15 -3.99 9.29 71.98 0.67 -3.32 16 13 C -0.11 -3.15 3.73 -10.37 -0.04 -3.19 16 14 C 0.13 4.50 8.08 83.17 0.67 5.17 16 15 N -0.66 -32.38 3.49 -738.03 -2.58 -34.96 16 16 C -0.28 -17.17 11.08 84.03 0.93 -16.24 16 17 H 0.05 3.21 8.06 -2.91 -0.02 3.19 16 18 C -0.09 -5.56 5.50 84.86 0.47 -5.10 16 19 N -0.98 -66.24 13.70 21.65 0.30 -65.95 16 20 Si 1.11 57.28 25.16 68.60 1.73 59.01 16 21 H -0.31 -16.10 7.11 99.48 0.71 -15.40 16 22 H -0.29 -14.77 6.51 99.48 0.65 -14.12 16 23 H -0.25 -11.19 6.20 99.48 0.62 -10.57 16 24 C 0.09 3.49 5.24 83.26 0.44 3.92 16 25 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.08 2.35 6.49 -2.39 -0.02 2.34 16 28 H 0.25 0.79 8.06 -2.91 -0.02 0.76 16 29 H 0.19 1.81 7.74 -2.91 -0.02 1.79 16 30 H 0.42 7.79 7.77 -92.71 -0.72 7.07 16 31 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.06 1.82 6.50 -2.39 -0.02 1.81 16 34 H 0.14 2.55 8.14 -2.39 -0.02 2.53 16 35 H 0.05 1.80 6.43 -2.39 -0.02 1.79 16 36 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.25 16.69 8.73 -92.71 -0.81 15.88 16 38 H 0.07 2.38 7.66 -2.39 -0.02 2.36 16 39 H 0.03 1.50 4.71 -2.39 -0.01 1.49 16 Total: -1.00 -85.42 319.96 3.08 -82.35 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: 0.16 Total: 11.47 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: 5.74 Total: -2.72 kcal Atomic # 7 Polarization: -117.77 SS G_CDS: -4.54 Total: -122.31 kcal Atomic # 8 Polarization: -27.77 SS G_CDS: -0.01 Total: -27.79 kcal Atomic # 14 Polarization: 57.28 SS G_CDS: 1.73 Total: 59.01 kcal Total: -85.42 3.08 -82.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969269897.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.197 kcal (2) G-P(sol) polarization free energy of solvation -85.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds