Wall clock time and date at job start Tue Mar 31 2020 00:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.33653 * 125.80555 * 2 1 4 4 C 1.34204 * 110.90869 * 180.26876 * 3 2 1 5 5 C 1.34180 * 109.12995 * 359.76077 * 4 3 2 6 6 C 1.36421 * 125.79824 * 179.85813 * 2 1 3 7 7 C 1.47379 * 127.19482 * 0.02562 * 6 2 1 8 8 O 1.21618 * 119.99742 * 359.71127 * 7 6 2 9 9 N 1.34771 * 119.99840 * 179.70946 * 7 6 2 10 10 C 1.46506 * 119.99858 * 180.02562 * 9 7 6 11 11 H 1.09004 * 109.46413 * 324.99258 * 10 9 7 12 12 C 1.52996 * 109.47215 * 84.99661 * 10 9 7 13 13 C 1.52994 * 109.47132 * 205.00028 * 10 9 7 14 14 C 1.53940 * 113.74425 * 161.99291 * 13 10 9 15 15 N 1.47813 * 86.03742 * 222.07990 * 14 13 10 16 16 C 1.36939 * 134.45700 * 204.63917 * 15 14 13 17 17 H 1.07993 * 120.00048 * 179.86964 * 16 15 14 18 18 C 1.38812 * 120.00124 * 359.87128 * 16 15 14 19 19 N 1.31624 * 119.99923 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00044 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46955 * 90.00221 * 20 18 16 22 22 H 1.48505 * 109.47184 * 209.99921 * 20 18 16 23 23 H 1.48493 * 109.47387 * 330.00137 * 20 18 16 24 24 C 1.47581 * 91.04980 * 24.54852 * 15 14 13 25 25 H 1.09003 * 109.47234 * 270.14307 * 1 2 3 26 26 H 1.08997 * 109.47219 * 30.13860 * 1 2 3 27 27 H 1.09002 * 109.47118 * 150.14024 * 1 2 3 28 28 H 1.08007 * 125.43785 * 179.76361 * 4 3 2 29 29 H 1.08000 * 127.02497 * 179.97438 * 5 4 3 30 30 H 0.96998 * 120.00512 * 359.97438 * 9 7 6 31 31 H 1.09006 * 109.46879 * 175.81450 * 12 10 9 32 32 H 1.08992 * 109.47409 * 55.81383 * 12 10 9 33 33 H 1.09004 * 109.47115 * 295.80771 * 12 10 9 34 34 H 1.09003 * 112.94389 * 293.58394 * 13 10 9 35 35 H 1.08998 * 113.77360 * 336.34571 * 14 13 10 36 36 H 1.08999 * 113.76957 * 107.74222 * 14 13 10 37 37 H 0.96997 * 119.99980 * 179.97438 * 19 18 16 38 38 H 1.08994 * 113.77118 * 221.14684 * 24 15 14 39 39 H 1.09006 * 113.87070 * 89.76609 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2889 1.0839 0.0000 4 6 3.5858 0.7389 -0.0059 5 6 3.6849 -0.5992 -0.0046 6 6 2.3050 -1.1065 0.0027 7 6 1.8739 -2.5158 0.0057 8 8 0.6889 -2.7892 0.0112 9 7 2.7929 -3.5016 0.0023 10 6 2.3644 -4.9026 0.0047 11 1 1.4557 -5.0034 0.5981 12 6 2.0890 -5.3541 -1.4310 13 6 3.4679 -5.7723 0.6101 14 6 2.9831 -7.1606 1.0657 15 7 3.8257 -6.9491 2.2616 16 6 4.4424 -7.7791 3.1593 17 1 5.0209 -7.3627 3.9706 18 6 4.3239 -9.1558 3.0266 19 7 3.6192 -9.6633 2.0375 20 14 5.1656 -10.2880 4.2508 21 1 4.2441 -10.5673 5.3814 22 1 5.5259 -11.5627 3.5795 23 1 6.3959 -9.6343 4.7648 24 6 3.7374 -5.4850 2.0983 25 1 -0.3634 0.0026 1.0277 26 1 -0.3633 0.8887 -0.5160 27 1 -0.3633 -0.8913 -0.5117 28 1 4.4173 1.4283 -0.0108 29 1 4.5928 -1.1841 -0.0087 30 1 3.7381 -3.2835 -0.0025 31 1 1.8423 -6.4158 -1.4369 32 1 2.9754 -5.1836 -2.0419 33 1 1.2529 -4.7846 -1.8369 34 1 4.3697 -5.8014 -0.0015 35 1 1.9158 -7.2040 1.2823 36 1 3.3222 -7.9759 0.4266 37 1 3.5367 -10.6253 1.9446 38 1 4.6775 -4.9649 2.2821 39 1 2.8927 -5.0332 2.6185 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969269898.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:12 Heat of formation + Delta-G solvation = 25.650959 kcal Electronic energy + Delta-G solvation = -21369.551515 eV Core-core repulsion = 18087.619571 eV Total energy + Delta-G solvation = -3281.931944 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -42.71077 -39.55966 -37.94054 -34.78257 -33.21451 -32.21051 -31.91788 -30.34460 -27.45932 -27.03967 -24.85991 -24.17100 -23.22082 -21.65690 -20.47937 -20.04571 -18.97775 -17.82577 -16.77623 -16.48773 -15.94006 -15.80352 -14.82161 -14.78419 -14.42410 -13.97596 -13.72266 -13.37989 -13.28993 -13.15814 -13.03048 -13.01408 -12.26204 -12.02007 -11.89371 -11.56843 -11.37846 -11.19819 -10.87352 -10.64901 -10.32705 -10.05988 -9.96065 -9.79363 -9.63513 -9.39694 -8.87756 -8.77540 -8.63853 -6.85291 -5.74987 -3.06916 1.28026 1.90203 2.64197 3.39084 3.40642 3.44865 3.45037 3.46934 4.34999 4.46898 4.71151 4.74969 5.09206 5.15770 5.22412 5.34627 5.37859 5.43163 5.51237 5.57853 5.65451 5.72352 5.85222 5.98746 6.04613 6.10825 6.13288 6.32146 6.39288 6.48585 6.63273 6.66785 6.82723 6.88449 7.24607 7.38825 7.57860 7.72892 8.00163 8.39956 9.06648 9.72813 10.62451 11.42322 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.032318 B = 0.003471 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.174706 B = 8064.966237 C = 8459.815399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.073 3.927 3 O -0.179 6.179 4 C -0.043 4.043 5 C -0.186 4.186 6 C -0.242 4.242 7 C 0.588 3.412 8 O -0.546 6.546 9 N -0.710 5.710 10 C 0.151 3.849 11 H 0.088 0.912 12 C -0.158 4.158 13 C -0.147 4.147 14 C 0.176 3.824 15 N -0.612 5.612 16 C -0.223 4.223 17 H 0.079 0.921 18 C -0.008 4.008 19 N -0.921 5.921 20 Si 0.911 3.089 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.281 1.281 24 C 0.126 3.874 25 H 0.088 0.912 26 H 0.075 0.925 27 H 0.110 0.890 28 H 0.207 0.793 29 H 0.157 0.843 30 H 0.398 0.602 31 H 0.071 0.929 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.088 0.912 35 H 0.028 0.972 36 H 0.075 0.925 37 H 0.253 0.747 38 H 0.040 0.960 39 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.481 19.990 -7.634 21.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.020 3.980 3 O -0.075 6.075 4 C -0.109 4.109 5 C -0.206 4.206 6 C -0.247 4.247 7 C 0.375 3.625 8 O -0.426 6.426 9 N -0.360 5.360 10 C 0.047 3.953 11 H 0.106 0.894 12 C -0.216 4.216 13 C -0.167 4.167 14 C 0.050 3.950 15 N -0.338 5.338 16 C -0.351 4.351 17 H 0.097 0.903 18 C -0.205 4.205 19 N -0.569 5.569 20 Si 0.742 3.258 21 H -0.216 1.216 22 H -0.216 1.216 23 H -0.207 1.207 24 C -0.001 4.001 25 H 0.106 0.894 26 H 0.094 0.906 27 H 0.128 0.872 28 H 0.223 0.777 29 H 0.175 0.825 30 H 0.232 0.768 31 H 0.090 0.910 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.106 0.894 35 H 0.046 0.954 36 H 0.093 0.907 37 H 0.064 0.936 38 H 0.058 0.942 39 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -2.311 19.730 -7.483 21.228 hybrid contribution 1.204 -0.684 0.790 1.594 sum -1.106 19.047 -6.693 20.219 Atomic orbital electron populations 1.20606 0.83781 1.04964 1.04427 1.22830 0.94121 0.83117 0.97921 1.83754 1.17175 1.35077 1.71515 1.23825 0.83521 0.96412 1.07096 1.22912 0.96811 0.94549 1.06291 1.21273 0.93235 0.94191 1.15956 1.17181 0.85646 0.83632 0.76008 1.90742 1.16607 1.84047 1.51229 1.45926 1.09404 1.06313 1.74325 1.21124 0.98850 0.78538 0.96806 0.89387 1.22112 1.01279 1.02067 0.96153 1.23846 0.97724 0.98729 0.96401 1.22230 0.93416 0.91639 0.87729 1.45992 1.57031 0.99578 1.31246 1.19030 1.23757 0.87092 1.05198 0.90336 1.24776 1.00463 0.96434 0.98794 1.69810 1.44106 1.11132 1.31814 0.86128 0.78928 0.80411 0.80342 1.21638 1.21625 1.20661 1.22527 0.97714 0.87862 0.91947 0.89363 0.90610 0.87197 0.77676 0.82501 0.76827 0.91030 0.92843 0.92782 0.89381 0.95390 0.90694 0.93646 0.94222 0.95018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.78 9.89 36.01 0.36 -0.43 16 2 C 0.07 0.85 7.37 -34.96 -0.26 0.59 16 3 O -0.18 -1.88 10.52 7.68 0.08 -1.80 16 4 C -0.04 -0.36 12.03 29.30 0.35 -0.01 16 5 C -0.19 -1.82 10.60 -37.45 -0.40 -2.22 16 6 C -0.24 -3.06 6.31 -103.27 -0.65 -3.71 16 7 C 0.59 8.74 7.78 -12.54 -0.10 8.64 16 8 O -0.55 -9.56 14.51 5.26 0.08 -9.49 16 9 N -0.71 -9.80 4.94 -54.90 -0.27 -10.07 16 10 C 0.15 2.39 2.29 -67.93 -0.16 2.23 16 11 H 0.09 1.60 7.49 -51.93 -0.39 1.21 16 12 C -0.16 -2.27 9.46 37.16 0.35 -1.91 16 13 C -0.15 -2.66 3.35 -89.70 -0.30 -2.96 16 14 C 0.18 4.11 6.90 -2.84 -0.02 4.09 16 15 N -0.61 -15.88 3.70 -177.71 -0.66 -16.54 16 16 C -0.22 -6.35 10.70 -15.06 -0.16 -6.51 16 17 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 18 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 19 N -0.92 -27.46 11.39 55.49 0.63 -26.83 16 20 Si 0.91 22.30 29.55 -169.99 -5.02 17.28 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 C 0.13 2.58 8.38 -2.97 -0.02 2.56 16 25 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.11 1.22 6.49 -51.93 -0.34 0.88 16 28 H 0.21 0.89 8.06 -52.48 -0.42 0.46 16 29 H 0.16 1.19 7.74 -52.49 -0.41 0.78 16 30 H 0.40 4.62 7.77 -40.82 -0.32 4.30 16 31 H 0.07 1.04 7.99 -51.93 -0.42 0.63 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.09 1.54 8.14 -51.93 -0.42 1.11 16 35 H 0.03 0.68 8.03 -51.93 -0.42 0.26 16 36 H 0.07 1.92 7.16 -51.93 -0.37 1.55 16 37 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 38 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.03 0.67 8.10 -51.93 -0.42 0.25 16 LS Contribution 330.32 15.07 4.98 4.98 Total: -1.00 -33.62 330.32 -6.87 -40.49 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -5.58 Total: 1.95 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: -1.10 Total: 0.02 kcal Atomic # 7 Polarization: -53.14 SS G_CDS: -0.30 Total: -53.43 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.16 Total: -11.29 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.62 -6.87 -40.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969269898.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.143 kcal (2) G-P(sol) polarization free energy of solvation -33.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds