Wall clock time and date at job start Tue Mar 31 2020 00:35:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.33653 * 125.80555 * 2 1 4 4 C 1.34204 * 110.90869 * 180.26876 * 3 2 1 5 5 C 1.34180 * 109.12995 * 359.76077 * 4 3 2 6 6 C 1.36421 * 125.79824 * 179.85813 * 2 1 3 7 7 C 1.47379 * 127.19482 * 0.02562 * 6 2 1 8 8 O 1.21618 * 119.99742 * 359.71127 * 7 6 2 9 9 N 1.34771 * 119.99840 * 179.70946 * 7 6 2 10 10 C 1.46506 * 119.99858 * 180.02562 * 9 7 6 11 11 H 1.09004 * 109.46413 * 324.99258 * 10 9 7 12 12 C 1.52996 * 109.47215 * 84.99661 * 10 9 7 13 13 C 1.52994 * 109.47132 * 205.00028 * 10 9 7 14 14 C 1.53940 * 113.74425 * 161.99291 * 13 10 9 15 15 N 1.47813 * 86.03742 * 222.07990 * 14 13 10 16 16 C 1.36939 * 134.45700 * 204.63917 * 15 14 13 17 17 H 1.07993 * 120.00048 * 179.86964 * 16 15 14 18 18 C 1.38812 * 120.00124 * 359.87128 * 16 15 14 19 19 N 1.31624 * 119.99923 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00044 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46955 * 90.00221 * 20 18 16 22 22 H 1.48505 * 109.47184 * 209.99921 * 20 18 16 23 23 H 1.48493 * 109.47387 * 330.00137 * 20 18 16 24 24 C 1.47581 * 91.04980 * 24.54852 * 15 14 13 25 25 H 1.09003 * 109.47234 * 270.14307 * 1 2 3 26 26 H 1.08997 * 109.47219 * 30.13860 * 1 2 3 27 27 H 1.09002 * 109.47118 * 150.14024 * 1 2 3 28 28 H 1.08007 * 125.43785 * 179.76361 * 4 3 2 29 29 H 1.08000 * 127.02497 * 179.97438 * 5 4 3 30 30 H 0.96998 * 120.00512 * 359.97438 * 9 7 6 31 31 H 1.09006 * 109.46879 * 175.81450 * 12 10 9 32 32 H 1.08992 * 109.47409 * 55.81383 * 12 10 9 33 33 H 1.09004 * 109.47115 * 295.80771 * 12 10 9 34 34 H 1.09003 * 112.94389 * 293.58394 * 13 10 9 35 35 H 1.08998 * 113.77360 * 336.34571 * 14 13 10 36 36 H 1.08999 * 113.76957 * 107.74222 * 14 13 10 37 37 H 0.96997 * 119.99980 * 179.97438 * 19 18 16 38 38 H 1.08994 * 113.77118 * 221.14684 * 24 15 14 39 39 H 1.09006 * 113.87070 * 89.76609 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2889 1.0839 0.0000 4 6 3.5858 0.7389 -0.0059 5 6 3.6849 -0.5992 -0.0046 6 6 2.3050 -1.1065 0.0027 7 6 1.8739 -2.5158 0.0057 8 8 0.6889 -2.7892 0.0112 9 7 2.7929 -3.5016 0.0023 10 6 2.3644 -4.9026 0.0047 11 1 1.4557 -5.0034 0.5981 12 6 2.0890 -5.3541 -1.4310 13 6 3.4679 -5.7723 0.6101 14 6 2.9831 -7.1606 1.0657 15 7 3.8257 -6.9491 2.2616 16 6 4.4424 -7.7791 3.1593 17 1 5.0209 -7.3627 3.9706 18 6 4.3239 -9.1558 3.0266 19 7 3.6192 -9.6633 2.0375 20 14 5.1656 -10.2880 4.2508 21 1 4.2441 -10.5673 5.3814 22 1 5.5259 -11.5627 3.5795 23 1 6.3959 -9.6343 4.7648 24 6 3.7374 -5.4850 2.0983 25 1 -0.3634 0.0026 1.0277 26 1 -0.3633 0.8887 -0.5160 27 1 -0.3633 -0.8913 -0.5117 28 1 4.4173 1.4283 -0.0108 29 1 4.5928 -1.1841 -0.0087 30 1 3.7381 -3.2835 -0.0025 31 1 1.8423 -6.4158 -1.4369 32 1 2.9754 -5.1836 -2.0419 33 1 1.2529 -4.7846 -1.8369 34 1 4.3697 -5.8014 -0.0015 35 1 1.9158 -7.2040 1.2823 36 1 3.3222 -7.9759 0.4266 37 1 3.5367 -10.6253 1.9446 38 1 4.6775 -4.9649 2.2821 39 1 2.8927 -5.0332 2.6185 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969269898.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:11 Heat of formation + Delta-G solvation = 3.261477 kcal Electronic energy + Delta-G solvation = -21370.522395 eV Core-core repulsion = 18087.619571 eV Total energy + Delta-G solvation = -3282.902824 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.49006 -40.86817 -39.52554 -36.19343 -34.27040 -33.93541 -32.79492 -31.64982 -29.33938 -27.85825 -26.57356 -25.77350 -24.46509 -22.82497 -21.64020 -21.30469 -20.31465 -18.83035 -18.70489 -17.32175 -17.22567 -16.88530 -16.74941 -15.94172 -15.72088 -15.53337 -15.14414 -14.71518 -14.39776 -14.21012 -13.94363 -13.80986 -13.71743 -13.37695 -13.26638 -13.08708 -12.95626 -12.67841 -12.64135 -12.36397 -12.02344 -11.80088 -11.57843 -11.23365 -10.92416 -10.86791 -10.79197 -10.04299 -9.48069 -8.92553 -7.90712 -5.24429 0.37376 1.18045 1.45380 1.47649 1.56219 1.87436 2.28463 2.38393 2.47382 3.29241 3.38766 3.63982 3.69477 3.89959 3.95202 3.98998 4.27661 4.39178 4.45563 4.56650 4.63673 4.68639 4.76261 4.78145 4.83660 4.86129 4.94262 4.95360 5.11182 5.24502 5.24873 5.30775 5.42373 5.53235 5.56924 5.64920 5.93684 6.08146 6.63627 6.91787 7.28328 7.60335 8.56245 9.26291 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.032318 B = 0.003471 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.174706 B = 8064.966237 C = 8459.815399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.065 3.935 3 O -0.182 6.182 4 C -0.031 4.031 5 C -0.198 4.198 6 C -0.269 4.269 7 C 0.585 3.415 8 O -0.581 6.581 9 N -0.701 5.701 10 C 0.163 3.837 11 H 0.062 0.938 12 C -0.151 4.151 13 C -0.109 4.109 14 C 0.171 3.829 15 N -0.643 5.643 16 C -0.239 4.239 17 H 0.083 0.917 18 C -0.067 4.067 19 N -0.953 5.953 20 Si 0.979 3.021 21 H -0.289 1.289 22 H -0.292 1.292 23 H -0.266 1.266 24 C 0.127 3.873 25 H 0.092 0.908 26 H 0.099 0.901 27 H 0.091 0.909 28 H 0.249 0.751 29 H 0.178 0.822 30 H 0.411 0.589 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.051 0.949 34 H 0.106 0.894 35 H 0.012 0.988 36 H 0.048 0.952 37 H 0.249 0.751 38 H 0.061 0.939 39 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.248 22.096 -7.743 23.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.012 3.988 3 O -0.078 6.078 4 C -0.095 4.095 5 C -0.217 4.217 6 C -0.274 4.274 7 C 0.374 3.626 8 O -0.463 6.463 9 N -0.351 5.351 10 C 0.058 3.942 11 H 0.080 0.920 12 C -0.209 4.209 13 C -0.128 4.128 14 C 0.045 3.955 15 N -0.370 5.370 16 C -0.367 4.367 17 H 0.101 0.899 18 C -0.260 4.260 19 N -0.602 5.602 20 Si 0.807 3.193 21 H -0.216 1.216 22 H -0.219 1.219 23 H -0.191 1.191 24 C 0.003 3.997 25 H 0.111 0.889 26 H 0.118 0.882 27 H 0.110 0.890 28 H 0.265 0.735 29 H 0.196 0.804 30 H 0.248 0.752 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.070 0.930 34 H 0.124 0.876 35 H 0.029 0.971 36 H 0.066 0.934 37 H 0.058 0.942 38 H 0.079 0.921 39 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -0.553 21.887 -7.592 23.173 hybrid contribution 0.652 -1.246 0.834 1.635 sum 0.099 20.641 -6.758 21.720 Atomic orbital electron populations 1.20606 0.83122 1.05217 1.04772 1.23094 0.94883 0.83299 0.97521 1.83781 1.18116 1.34624 1.71312 1.24682 0.83431 0.96839 1.04585 1.23184 0.96150 0.95354 1.06997 1.21260 0.95288 0.92956 1.17891 1.17534 0.85173 0.84683 0.75180 1.90725 1.18061 1.84713 1.52782 1.45710 1.10131 1.05125 1.74142 1.20768 0.96719 0.79522 0.97191 0.92012 1.22040 1.02130 1.01559 0.95200 1.23443 0.98479 0.95385 0.95523 1.22136 0.92233 0.93907 0.87238 1.46418 1.57186 1.01901 1.31463 1.19449 1.23697 0.87958 1.05602 0.89913 1.25639 1.01606 0.97967 1.00755 1.70000 1.45679 1.10942 1.33554 0.85066 0.78253 0.78077 0.77857 1.21605 1.21861 1.19092 1.22658 0.98537 0.85299 0.93246 0.88939 0.88186 0.89047 0.73480 0.80417 0.75211 0.91638 0.90847 0.92952 0.87622 0.97066 0.93382 0.94205 0.92083 0.95239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.51 9.89 71.24 0.70 -0.81 16 2 C 0.07 1.43 7.37 25.26 0.19 1.62 16 3 O -0.18 -3.37 10.52 4.57 0.05 -3.33 16 4 C -0.03 -0.41 12.03 66.89 0.80 0.40 16 5 C -0.20 -3.31 10.60 23.65 0.25 -3.06 16 6 C -0.27 -6.45 6.31 -18.99 -0.12 -6.57 16 7 C 0.58 17.08 7.78 86.65 0.67 17.76 16 8 O -0.58 -20.65 14.51 -4.09 -0.06 -20.71 16 9 N -0.70 -18.39 4.94 -445.84 -2.20 -20.60 16 10 C 0.16 5.08 2.29 44.99 0.10 5.18 16 11 H 0.06 2.29 7.49 -2.38 -0.02 2.27 16 12 C -0.15 -4.22 9.46 71.98 0.68 -3.54 16 13 C -0.11 -3.85 3.35 -10.14 -0.03 -3.88 16 14 C 0.17 8.18 6.90 86.44 0.60 8.77 16 15 N -0.64 -33.56 3.70 -716.16 -2.65 -36.21 16 16 C -0.24 -13.63 10.70 84.03 0.90 -12.73 16 17 H 0.08 4.51 7.83 -2.91 -0.02 4.48 16 18 C -0.07 -3.85 5.50 84.86 0.47 -3.38 16 19 N -0.95 -58.10 11.39 21.65 0.25 -57.86 16 20 Si 0.98 46.12 29.55 68.60 2.03 48.15 16 21 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 22 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 23 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 24 C 0.13 5.12 8.38 86.49 0.72 5.84 16 25 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.09 2.07 6.49 -2.39 -0.02 2.05 16 28 H 0.25 0.90 8.06 -2.91 -0.02 0.88 16 29 H 0.18 2.06 7.74 -2.91 -0.02 2.04 16 30 H 0.41 8.53 7.77 -92.71 -0.72 7.81 16 31 H 0.06 1.90 7.99 -2.38 -0.02 1.89 16 32 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.11 3.44 8.14 -2.39 -0.02 3.42 16 35 H 0.01 0.58 8.03 -2.39 -0.02 0.56 16 36 H 0.05 2.54 7.16 -2.39 -0.02 2.53 16 37 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 38 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.03 1.22 8.10 -2.38 -0.02 1.20 16 Total: -1.00 -74.14 330.32 3.68 -70.46 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: 0.34 Total: 14.48 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: 5.94 Total: 5.61 kcal Atomic # 7 Polarization: -110.06 SS G_CDS: -4.61 Total: -114.67 kcal Atomic # 8 Polarization: -24.03 SS G_CDS: -0.01 Total: -24.04 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Total: -74.14 3.68 -70.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969269898.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.726 kcal (2) G-P(sol) polarization free energy of solvation -74.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds