Wall clock time and date at job start Tue Mar 31 2020 01:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.40375 * 126.64552 * 2 1 4 4 C 1.35127 * 107.11319 * 179.97438 * 3 2 1 5 5 O 1.33925 * 108.77204 * 359.76692 * 4 3 2 6 6 C 1.34916 * 109.38623 * 0.38572 * 5 4 3 7 7 C 1.46654 * 125.99106 * 179.88554 * 6 5 4 8 8 O 1.21691 * 119.99748 * 179.68242 * 7 6 5 9 9 N 1.34780 * 119.99869 * 359.68744 * 7 6 5 10 10 C 1.46496 * 119.99589 * 180.02562 * 9 7 6 11 11 H 1.08999 * 109.47499 * 34.99519 * 10 9 7 12 12 C 1.53011 * 109.47036 * 274.99648 * 10 9 7 13 13 C 1.53002 * 109.46844 * 155.00023 * 10 9 7 14 14 C 1.53939 * 113.73909 * 278.73434 * 13 10 9 15 15 N 1.47816 * 86.03954 * 222.08461 * 14 13 10 16 16 C 1.36933 * 134.46147 * 204.64304 * 15 14 13 17 17 H 1.07992 * 120.00471 * 173.34844 * 16 15 14 18 18 C 1.38814 * 119.99601 * 353.35203 * 16 15 14 19 19 N 1.31619 * 120.00226 * 5.06525 * 18 16 15 20 20 Si 1.86799 * 119.99753 * 185.05828 * 18 16 15 21 21 H 1.48504 * 109.47072 * 94.98999 * 20 18 16 22 22 H 1.48499 * 109.47204 * 214.98735 * 20 18 16 23 23 H 1.48500 * 109.47496 * 334.99149 * 20 18 16 24 24 C 1.47579 * 91.04536 * 24.55153 * 15 14 13 25 25 H 1.08999 * 109.46882 * 270.03689 * 1 2 3 26 26 H 1.08993 * 109.47260 * 30.04191 * 1 2 3 27 27 H 1.09000 * 109.46625 * 150.04587 * 1 2 3 28 28 H 1.07997 * 126.43919 * 359.96270 * 3 2 1 29 29 H 1.08003 * 125.61294 * 180.02562 * 4 3 2 30 30 H 0.96994 * 119.99565 * 359.97438 * 9 7 6 31 31 H 1.08999 * 109.46871 * 300.00255 * 12 10 9 32 32 H 1.09002 * 109.47073 * 180.02562 * 12 10 9 33 33 H 1.08998 * 109.46722 * 59.99889 * 12 10 9 34 34 H 1.08996 * 112.94566 * 50.32906 * 13 10 9 35 35 H 1.08994 * 113.77395 * 336.35073 * 14 13 10 36 36 H 1.09001 * 113.76712 * 107.74781 * 14 13 10 37 37 H 0.97002 * 119.99772 * 180.02562 * 19 18 16 38 38 H 1.09005 * 113.77142 * 221.14971 * 24 15 14 39 39 H 1.09004 * 113.87500 * 89.76822 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1263 0.0000 4 6 3.6183 0.6745 0.0006 5 8 3.6006 -0.6646 0.0061 6 6 2.3221 -1.0956 0.0006 7 6 1.8844 -2.4953 0.0016 8 8 0.6969 -2.7614 0.0020 9 7 2.7973 -3.4868 0.0021 10 6 2.3601 -4.8850 0.0025 11 1 1.4483 -4.9807 -0.5870 12 6 2.0876 -5.3337 1.4398 13 6 3.4558 -5.7621 -0.6066 14 6 3.4600 -5.7689 -2.1459 15 7 3.6975 -7.2238 -2.0367 16 6 4.2661 -8.1665 -2.8510 17 1 4.4175 -9.1725 -2.4887 18 6 4.6480 -7.8290 -4.1422 19 7 4.5562 -6.5812 -4.5507 20 14 5.2924 -9.1458 -5.2998 21 1 4.1788 -9.6532 -6.1413 22 1 6.3466 -8.5666 -6.1707 23 1 5.8638 -10.2646 -4.5080 24 6 3.0781 -7.2517 -0.6975 25 1 -0.3633 0.0007 1.0277 26 1 -0.3633 0.8895 -0.5144 27 1 -0.3632 -0.8904 -0.5131 28 1 2.0306 2.1595 -0.0006 29 1 4.5046 1.2917 0.0011 30 1 3.7438 -3.2745 0.0015 31 1 2.9994 -5.2379 2.0293 32 1 1.7627 -6.3741 1.4401 33 1 1.3071 -4.7087 1.8737 34 1 4.4366 -5.5842 -0.1658 35 1 2.4976 -5.5129 -2.5891 36 1 4.2919 -5.2186 -2.5854 37 1 4.8228 -6.3455 -5.4531 38 1 3.6057 -7.8832 0.0175 39 1 2.0033 -7.4324 -0.7122 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969286387.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:37 Heat of formation + Delta-G solvation = 27.092994 kcal Electronic energy + Delta-G solvation = -21465.112663 eV Core-core repulsion = 18183.243251 eV Total energy + Delta-G solvation = -3281.869412 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -42.77958 -39.60312 -38.00757 -35.04175 -34.01964 -32.23507 -31.05030 -29.94711 -27.58645 -27.49371 -24.90318 -24.07585 -23.00592 -21.66484 -20.66073 -20.13000 -19.09509 -17.88053 -16.75086 -16.45225 -16.08226 -16.03728 -14.87993 -14.60062 -14.37934 -13.90450 -13.62444 -13.48620 -13.17645 -13.12461 -12.99453 -12.63882 -12.41401 -12.11893 -11.87580 -11.65973 -11.32487 -11.28487 -10.89648 -10.72606 -10.35168 -10.09023 -9.83513 -9.79976 -9.76299 -9.39753 -8.96108 -8.77587 -8.59451 -6.84786 -5.76620 -3.07905 1.02310 2.22805 2.65848 3.24012 3.34477 3.40202 3.45238 3.47245 4.46638 4.58033 4.66350 4.84154 5.11462 5.26789 5.29204 5.34355 5.41461 5.53924 5.64003 5.65674 5.66835 5.79329 5.91819 5.95139 6.02356 6.05975 6.24202 6.30779 6.36095 6.41455 6.58284 6.66097 6.73468 6.83640 7.25217 7.36698 7.57970 7.63321 7.99141 8.22624 9.05808 9.72225 10.62435 11.41123 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.024148 B = 0.003843 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.255484 B = 7283.822993 C = 7879.255415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.093 4.093 3 C -0.227 4.227 4 C -0.007 4.007 5 O -0.162 6.162 6 C -0.079 4.079 7 C 0.602 3.398 8 O -0.523 6.523 9 N -0.706 5.706 10 C 0.150 3.850 11 H 0.090 0.910 12 C -0.159 4.159 13 C -0.148 4.148 14 C 0.173 3.827 15 N -0.613 5.613 16 C -0.225 4.225 17 H 0.080 0.920 18 C -0.007 4.007 19 N -0.919 5.919 20 Si 0.909 3.091 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.280 1.280 24 C 0.131 3.869 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.088 0.912 28 H 0.154 0.846 29 H 0.209 0.791 30 H 0.404 0.596 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.054 0.946 34 H 0.088 0.912 35 H 0.028 0.972 36 H 0.067 0.933 37 H 0.254 0.746 38 H 0.044 0.956 39 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.326 14.777 12.233 19.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.096 4.096 3 C -0.246 4.246 4 C -0.077 4.077 5 O -0.057 6.057 6 C -0.131 4.131 7 C 0.388 3.612 8 O -0.401 6.401 9 N -0.355 5.355 10 C 0.046 3.954 11 H 0.108 0.892 12 C -0.217 4.217 13 C -0.168 4.168 14 C 0.048 3.952 15 N -0.339 5.339 16 C -0.352 4.352 17 H 0.098 0.902 18 C -0.203 4.203 19 N -0.566 5.566 20 Si 0.739 3.261 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.205 1.205 24 C 0.004 3.996 25 H 0.090 0.910 26 H 0.083 0.917 27 H 0.107 0.893 28 H 0.172 0.828 29 H 0.225 0.775 30 H 0.239 0.761 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.107 0.893 35 H 0.046 0.954 36 H 0.085 0.915 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -3.763 14.198 11.929 18.922 hybrid contribution 0.791 -0.234 -0.808 1.155 sum -2.971 13.964 11.121 18.097 Atomic orbital electron populations 1.20412 0.88288 1.03637 1.02710 1.20636 0.97666 0.91010 1.00302 1.21727 0.92507 1.00070 1.10302 1.24331 0.99899 0.80738 1.02741 1.84079 1.28440 1.22608 1.70548 1.22031 0.81387 0.95085 1.14589 1.16526 0.85920 0.81764 0.77028 1.90828 1.15730 1.82295 1.51296 1.46025 1.09770 1.06367 1.73313 1.21180 0.99061 0.78504 0.96699 0.89160 1.22139 1.01480 1.01799 0.96264 1.23851 0.97286 0.95805 0.99864 1.22237 0.98846 0.85841 0.88282 1.45976 1.66412 1.05311 1.16190 1.19033 1.32141 0.91206 0.92853 0.90208 1.24819 1.01935 0.96605 0.96982 1.69838 1.53104 1.15756 1.17906 0.86143 0.78080 0.80775 0.81057 1.21619 1.21718 1.20545 1.22492 0.96013 0.92196 0.88903 0.90988 0.91654 0.89332 0.82839 0.77473 0.76124 0.92669 0.91217 0.92684 0.89344 0.95388 0.91454 0.93648 0.93763 0.94703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.06 9.82 36.00 0.35 -0.70 16 2 C -0.09 -1.16 6.20 -104.43 -0.65 -1.81 16 3 C -0.23 -2.22 10.83 -39.88 -0.43 -2.65 16 4 C -0.01 -0.07 12.08 29.63 0.36 0.29 16 5 O -0.16 -1.98 10.40 5.00 0.05 -1.93 16 6 C -0.08 -1.10 7.13 -36.80 -0.26 -1.36 16 7 C 0.60 9.41 7.75 -12.86 -0.10 9.31 16 8 O -0.52 -9.30 14.40 5.20 0.07 -9.23 16 9 N -0.71 -10.35 5.07 -55.12 -0.28 -10.63 16 10 C 0.15 2.35 2.38 -67.93 -0.16 2.19 16 11 H 0.09 1.61 7.41 -51.93 -0.39 1.22 16 12 C -0.16 -2.12 9.31 37.16 0.35 -1.77 16 13 C -0.15 -2.68 3.47 -89.70 -0.31 -2.99 16 14 C 0.17 4.09 6.99 -2.84 -0.02 4.07 16 15 N -0.61 -15.86 3.70 -177.69 -0.66 -16.52 16 16 C -0.22 -6.39 10.70 -15.06 -0.16 -6.55 16 17 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 18 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 19 N -0.92 -27.66 11.51 55.49 0.64 -27.02 16 20 Si 0.91 22.33 29.56 -169.99 -5.02 17.31 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 C 0.13 2.63 7.64 -2.97 -0.02 2.61 16 25 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.09 1.17 6.44 -51.93 -0.33 0.84 16 28 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 29 H 0.21 0.98 8.06 -52.48 -0.42 0.56 16 30 H 0.40 5.33 8.36 -40.82 -0.34 4.99 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.89 7.52 -51.93 -0.39 0.50 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 35 H 0.03 0.70 7.99 -51.93 -0.41 0.29 16 36 H 0.07 1.75 7.37 -51.93 -0.38 1.37 16 37 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.04 0.69 8.10 -51.93 -0.42 0.26 16 LS Contribution 330.04 15.07 4.97 4.97 Total: -1.00 -33.36 330.04 -6.98 -40.34 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -5.60 Total: 2.36 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: -1.16 Total: 0.35 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: -0.30 Total: -54.17 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: 0.13 Total: -11.16 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.36 -6.98 -40.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969286387.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.431 kcal (2) G-P(sol) polarization free energy of solvation -33.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds