Wall clock time and date at job start Tue Mar 31 2020 01:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.40375 * 126.64552 * 2 1 4 4 C 1.35127 * 107.11319 * 179.97438 * 3 2 1 5 5 O 1.33925 * 108.77204 * 359.76692 * 4 3 2 6 6 C 1.34916 * 109.38623 * 0.38572 * 5 4 3 7 7 C 1.46654 * 125.99106 * 179.88554 * 6 5 4 8 8 O 1.21691 * 119.99748 * 179.68242 * 7 6 5 9 9 N 1.34780 * 119.99869 * 359.68744 * 7 6 5 10 10 C 1.46496 * 119.99589 * 180.02562 * 9 7 6 11 11 H 1.08999 * 109.47499 * 34.99519 * 10 9 7 12 12 C 1.53011 * 109.47036 * 274.99648 * 10 9 7 13 13 C 1.53002 * 109.46844 * 155.00023 * 10 9 7 14 14 C 1.53939 * 113.73909 * 278.73434 * 13 10 9 15 15 N 1.47816 * 86.03954 * 222.08461 * 14 13 10 16 16 C 1.36933 * 134.46147 * 204.64304 * 15 14 13 17 17 H 1.07992 * 120.00471 * 173.34844 * 16 15 14 18 18 C 1.38814 * 119.99601 * 353.35203 * 16 15 14 19 19 N 1.31619 * 120.00226 * 5.06525 * 18 16 15 20 20 Si 1.86799 * 119.99753 * 185.05828 * 18 16 15 21 21 H 1.48504 * 109.47072 * 94.98999 * 20 18 16 22 22 H 1.48499 * 109.47204 * 214.98735 * 20 18 16 23 23 H 1.48500 * 109.47496 * 334.99149 * 20 18 16 24 24 C 1.47579 * 91.04536 * 24.55153 * 15 14 13 25 25 H 1.08999 * 109.46882 * 270.03689 * 1 2 3 26 26 H 1.08993 * 109.47260 * 30.04191 * 1 2 3 27 27 H 1.09000 * 109.46625 * 150.04587 * 1 2 3 28 28 H 1.07997 * 126.43919 * 359.96270 * 3 2 1 29 29 H 1.08003 * 125.61294 * 180.02562 * 4 3 2 30 30 H 0.96994 * 119.99565 * 359.97438 * 9 7 6 31 31 H 1.08999 * 109.46871 * 300.00255 * 12 10 9 32 32 H 1.09002 * 109.47073 * 180.02562 * 12 10 9 33 33 H 1.08998 * 109.46722 * 59.99889 * 12 10 9 34 34 H 1.08996 * 112.94566 * 50.32906 * 13 10 9 35 35 H 1.08994 * 113.77395 * 336.35073 * 14 13 10 36 36 H 1.09001 * 113.76712 * 107.74781 * 14 13 10 37 37 H 0.97002 * 119.99772 * 180.02562 * 19 18 16 38 38 H 1.09005 * 113.77142 * 221.14971 * 24 15 14 39 39 H 1.09004 * 113.87500 * 89.76822 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1263 0.0000 4 6 3.6183 0.6745 0.0006 5 8 3.6006 -0.6646 0.0061 6 6 2.3221 -1.0956 0.0006 7 6 1.8844 -2.4953 0.0016 8 8 0.6969 -2.7614 0.0020 9 7 2.7973 -3.4868 0.0021 10 6 2.3601 -4.8850 0.0025 11 1 1.4483 -4.9807 -0.5870 12 6 2.0876 -5.3337 1.4398 13 6 3.4558 -5.7621 -0.6066 14 6 3.4600 -5.7689 -2.1459 15 7 3.6975 -7.2238 -2.0367 16 6 4.2661 -8.1665 -2.8510 17 1 4.4175 -9.1725 -2.4887 18 6 4.6480 -7.8290 -4.1422 19 7 4.5562 -6.5812 -4.5507 20 14 5.2924 -9.1458 -5.2998 21 1 4.1788 -9.6532 -6.1413 22 1 6.3466 -8.5666 -6.1707 23 1 5.8638 -10.2646 -4.5080 24 6 3.0781 -7.2517 -0.6975 25 1 -0.3633 0.0007 1.0277 26 1 -0.3633 0.8895 -0.5144 27 1 -0.3632 -0.8904 -0.5131 28 1 2.0306 2.1595 -0.0006 29 1 4.5046 1.2917 0.0011 30 1 3.7438 -3.2745 0.0015 31 1 2.9994 -5.2379 2.0293 32 1 1.7627 -6.3741 1.4401 33 1 1.3071 -4.7087 1.8737 34 1 4.4366 -5.5842 -0.1658 35 1 2.4976 -5.5129 -2.5891 36 1 4.2919 -5.2186 -2.5854 37 1 4.8228 -6.3455 -5.4531 38 1 3.6057 -7.8832 0.0175 39 1 2.0033 -7.4324 -0.7122 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969286387.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:36 Heat of formation + Delta-G solvation = 4.464029 kcal Electronic energy + Delta-G solvation = -21466.093929 eV Core-core repulsion = 18183.243251 eV Total energy + Delta-G solvation = -3282.850678 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.64431 -40.91701 -39.60204 -36.37913 -34.99824 -34.18677 -32.29353 -30.95475 -29.37931 -28.51968 -26.61602 -25.69175 -24.27368 -22.78944 -21.86684 -21.37896 -20.45330 -19.01560 -18.73557 -17.48635 -17.29839 -17.02620 -16.85968 -15.82582 -15.73015 -15.59908 -14.90157 -14.69323 -14.56010 -14.06987 -14.02067 -13.85944 -13.49939 -13.44482 -13.30339 -13.10217 -12.90260 -12.79052 -12.69483 -12.52910 -12.00009 -11.75083 -11.54444 -11.31282 -11.07711 -10.88192 -10.64721 -10.19346 -9.53576 -8.92452 -7.93161 -5.25979 0.06277 1.43910 1.44227 1.46727 1.55510 1.73608 2.11999 2.26487 2.46615 3.27463 3.37129 3.67859 3.79885 3.85334 3.91869 3.99673 4.27801 4.45921 4.55593 4.57589 4.64616 4.73280 4.77254 4.79979 4.81763 4.85246 5.00131 5.05941 5.12832 5.23208 5.24684 5.32821 5.38564 5.49967 5.54510 5.63530 5.90544 5.91740 6.48899 6.89948 7.06069 7.59500 8.55989 9.24757 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.024148 B = 0.003843 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.255484 B = 7283.822993 C = 7879.255415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.097 4.097 3 C -0.235 4.235 4 C 0.011 3.989 5 O -0.173 6.173 6 C -0.119 4.119 7 C 0.598 3.402 8 O -0.555 6.555 9 N -0.703 5.703 10 C 0.159 3.841 11 H 0.065 0.935 12 C -0.149 4.149 13 C -0.111 4.111 14 C 0.170 3.830 15 N -0.645 5.645 16 C -0.237 4.237 17 H 0.087 0.913 18 C -0.068 4.068 19 N -0.955 5.955 20 Si 0.978 3.022 21 H -0.290 1.290 22 H -0.294 1.294 23 H -0.263 1.263 24 C 0.132 3.868 25 H 0.079 0.921 26 H 0.088 0.912 27 H 0.061 0.939 28 H 0.184 0.816 29 H 0.255 0.745 30 H 0.412 0.588 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.051 0.949 34 H 0.104 0.896 35 H 0.004 0.996 36 H 0.036 0.964 37 H 0.248 0.752 38 H 0.067 0.933 39 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.482 15.609 13.752 20.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.100 4.100 3 C -0.254 4.254 4 C -0.058 4.058 5 O -0.069 6.069 6 C -0.171 4.171 7 C 0.386 3.614 8 O -0.436 6.436 9 N -0.352 5.352 10 C 0.054 3.946 11 H 0.083 0.917 12 C -0.207 4.207 13 C -0.131 4.131 14 C 0.044 3.956 15 N -0.371 5.371 16 C -0.365 4.365 17 H 0.105 0.895 18 C -0.261 4.261 19 N -0.604 5.604 20 Si 0.806 3.194 21 H -0.217 1.217 22 H -0.220 1.220 23 H -0.188 1.188 24 C 0.007 3.993 25 H 0.098 0.902 26 H 0.107 0.893 27 H 0.080 0.920 28 H 0.202 0.798 29 H 0.271 0.729 30 H 0.248 0.752 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.070 0.930 34 H 0.122 0.878 35 H 0.022 0.978 36 H 0.054 0.946 37 H 0.057 0.943 38 H 0.085 0.915 39 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.916 15.017 13.492 20.397 hybrid contribution 0.523 -0.383 -1.254 1.412 sum -2.393 14.634 12.238 19.226 Atomic orbital electron populations 1.20419 0.87971 1.03455 1.03145 1.21041 0.98307 0.91771 0.98868 1.22096 0.92197 1.00709 1.10371 1.25347 1.01507 0.79658 0.99315 1.84064 1.27585 1.24328 1.70932 1.21722 0.82562 0.94438 1.18343 1.16780 0.85561 0.82722 0.76320 1.90799 1.16871 1.83074 1.52849 1.45938 1.10163 1.05863 1.73276 1.20945 0.96855 0.78886 0.97915 0.91654 1.22055 1.02316 1.02144 0.94194 1.23472 0.98824 0.95209 0.95570 1.22108 0.96280 0.85009 0.92168 1.46403 1.66961 1.05796 1.17952 1.19485 1.31520 0.92009 0.93516 0.89519 1.25687 1.03055 0.98643 0.98711 1.70036 1.54794 1.17726 1.17818 0.85065 0.77150 0.78474 0.78715 1.21701 1.22043 1.18774 1.22683 0.96428 0.93706 0.86512 0.90206 0.89296 0.91960 0.79847 0.72947 0.75246 0.90837 0.90244 0.92953 0.87754 0.97801 0.94577 0.94314 0.91486 0.93681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.06 9.82 71.24 0.70 -1.36 16 2 C -0.10 -2.33 6.20 -19.74 -0.12 -2.45 16 3 C -0.24 -3.94 10.83 22.07 0.24 -3.70 16 4 C 0.01 0.17 12.08 67.10 0.81 0.98 16 5 O -0.17 -4.02 10.40 -5.01 -0.05 -4.07 16 6 C -0.12 -3.31 7.13 24.07 0.17 -3.14 16 7 C 0.60 19.21 7.75 86.44 0.67 19.88 16 8 O -0.55 -20.57 14.40 -4.32 -0.06 -20.63 16 9 N -0.70 -20.78 5.07 -446.51 -2.27 -23.05 16 10 C 0.16 4.95 2.38 45.00 0.11 5.06 16 11 H 0.07 2.40 7.41 -2.39 -0.02 2.38 16 12 C -0.15 -3.73 9.31 71.99 0.67 -3.06 16 13 C -0.11 -3.96 3.47 -10.14 -0.04 -4.00 16 14 C 0.17 8.32 6.99 86.44 0.60 8.92 16 15 N -0.64 -33.68 3.70 -716.09 -2.65 -36.33 16 16 C -0.24 -13.55 10.70 84.03 0.90 -12.65 16 17 H 0.09 4.69 7.83 -2.91 -0.02 4.66 16 18 C -0.07 -3.96 5.50 84.86 0.47 -3.50 16 19 N -0.95 -59.28 11.51 21.65 0.25 -59.03 16 20 Si 0.98 46.43 29.56 68.60 2.03 48.46 16 21 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 22 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 23 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 24 C 0.13 5.16 7.64 86.49 0.66 5.82 16 25 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.06 1.72 6.44 -2.39 -0.02 1.70 16 28 H 0.18 1.86 8.06 -2.91 -0.02 1.84 16 29 H 0.25 1.18 8.06 -2.91 -0.02 1.15 16 30 H 0.41 10.79 8.36 -92.71 -0.77 10.01 16 31 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.08 1.84 7.52 -2.39 -0.02 1.82 16 33 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.10 3.44 8.14 -2.39 -0.02 3.42 16 35 H 0.00 0.22 7.99 -2.39 -0.02 0.20 16 36 H 0.04 1.97 7.37 -2.39 -0.02 1.95 16 37 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 38 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 39 H 0.05 1.71 8.10 -2.38 -0.02 1.69 16 Total: -1.00 -75.10 330.04 3.37 -71.73 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: 0.28 Total: 16.12 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: 5.84 Total: 6.80 kcal Atomic # 7 Polarization: -113.74 SS G_CDS: -4.67 Total: -118.41 kcal Atomic # 8 Polarization: -24.59 SS G_CDS: -0.11 Total: -24.71 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Total: -75.10 3.37 -71.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969286387.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.196 kcal (2) G-P(sol) polarization free energy of solvation -75.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds