Wall clock time and date at job start Tue Mar 31 2020 00:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.34175 * 125.43672 * 2 1 4 4 C 1.47025 * 105.95321 * 179.97438 * 3 2 1 5 5 C 1.47375 * 127.19517 * 179.97438 * 4 3 2 6 6 O 1.21616 * 119.99804 * 0.02562 * 5 4 3 7 7 N 1.34780 * 120.00097 * 180.02562 * 5 4 3 8 8 C 1.46496 * 119.99734 * 180.02562 * 7 5 4 9 9 H 1.08995 * 109.47552 * 324.99740 * 8 7 5 10 10 C 1.53008 * 109.47421 * 84.99427 * 8 7 5 11 11 C 1.52998 * 109.46930 * 204.99506 * 8 7 5 12 12 C 1.53504 * 114.20785 * 179.97438 * 11 8 7 13 13 N 1.47069 * 87.98363 * 220.34571 * 12 11 8 14 14 C 1.36941 * 136.05552 * 207.07801 * 13 12 11 15 15 H 1.08000 * 119.99396 * 7.56018 * 14 13 12 16 16 C 1.38806 * 119.99993 * 187.55101 * 14 13 12 17 17 N 1.31621 * 119.99759 * 174.37714 * 16 14 13 18 18 Si 1.86799 * 119.99972 * 354.38427 * 16 14 13 19 19 H 1.48501 * 109.46963 * 174.94900 * 18 16 14 20 20 H 1.48498 * 109.47184 * 294.94894 * 18 16 14 21 21 H 1.48507 * 109.47082 * 54.95224 * 18 16 14 22 22 C 1.47064 * 87.88742 * 27.34488 * 13 12 11 23 23 C 1.36421 * 105.61377 * 0.22532 * 4 3 2 24 24 O 1.33654 * 108.39731 * 359.63469 * 23 4 3 25 25 H 1.08997 * 109.47143 * 89.99793 * 1 2 3 26 26 H 1.09003 * 109.46756 * 209.99944 * 1 2 3 27 27 H 1.09001 * 109.46867 * 329.99938 * 1 2 3 28 28 H 1.07997 * 127.02432 * 0.02562 * 3 2 1 29 29 H 0.96996 * 120.00127 * 359.97438 * 7 5 4 30 30 H 1.09004 * 109.46240 * 60.00200 * 10 8 7 31 31 H 1.08998 * 109.47419 * 179.97438 * 10 8 7 32 32 H 1.08994 * 109.46942 * 300.00242 * 10 8 7 33 33 H 1.09002 * 113.41395 * 313.19707 * 11 8 7 34 34 H 1.08997 * 113.46758 * 105.56146 * 12 11 8 35 35 H 1.09000 * 113.51898 * 335.13170 * 12 11 8 36 36 H 0.96993 * 120.00423 * 354.88754 * 17 16 14 37 37 H 1.08993 * 113.47012 * 87.43421 * 22 13 12 38 38 H 1.09000 * 113.46758 * 217.87997 * 22 13 12 39 39 H 1.08005 * 125.80010 * 179.74824 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2850 1.0932 0.0000 4 6 3.6711 0.6028 0.0006 5 6 4.9025 1.4124 0.0003 6 8 4.8320 2.6265 0.0000 7 7 6.1069 0.8073 0.0005 8 6 7.3309 1.6121 0.0008 9 1 7.1722 2.5151 -0.5886 10 6 7.6878 1.9974 1.4379 11 6 8.4754 0.7999 -0.6086 12 6 9.8167 1.5445 -0.6625 13 7 10.0291 0.9588 -1.9947 14 6 11.1119 0.6246 -2.7635 15 1 12.1069 0.6775 -2.3469 16 6 10.9305 0.2177 -4.0781 17 7 11.9745 0.0031 -4.8505 18 14 9.2050 -0.0252 -4.7511 19 1 9.2787 -0.3392 -6.2006 20 1 8.5476 -1.1474 -4.0343 21 1 8.4170 1.2179 -4.5533 22 6 8.5671 0.8963 -2.1405 23 6 3.5790 -0.7583 -0.0042 24 8 2.2852 -1.0936 0.0005 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 1.9596 2.1230 0.0004 29 1 6.1631 -0.1611 0.0012 30 1 7.8466 1.0943 2.0273 31 1 8.5988 2.5958 1.4382 32 1 6.8724 2.5760 1.8720 33 1 8.5428 -0.2150 -0.2168 34 1 10.5342 1.2007 0.0824 35 1 9.7116 2.6294 -0.6770 36 1 12.8669 0.2000 -4.5256 37 1 8.1317 1.8101 -2.5446 38 1 8.2201 0.0001 -2.6548 39 1 4.4104 -1.4477 -0.0090 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969544028.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:17 Heat of formation + Delta-G solvation = 34.544873 kcal Electronic energy + Delta-G solvation = -21280.151358 eV Core-core repulsion = 17998.605083 eV Total energy + Delta-G solvation = -3281.546275 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.78877 -39.81589 -38.45473 -35.02259 -33.34910 -32.69924 -32.20031 -30.44004 -27.76125 -26.94783 -25.47872 -24.43936 -23.22210 -21.31411 -20.95650 -20.12724 -19.16078 -17.90444 -17.46804 -16.56412 -16.32808 -16.19277 -15.32232 -14.88770 -14.67219 -13.99863 -13.86806 -13.56814 -13.44788 -13.36320 -13.17051 -13.01506 -12.95407 -12.31678 -12.12818 -11.90196 -11.83866 -11.50654 -10.94905 -10.67115 -10.36121 -10.29628 -9.97437 -9.93954 -9.27428 -9.14163 -8.95877 -8.90825 -8.80671 -7.17082 -6.30005 -3.24057 1.15577 1.82010 2.55879 3.12358 3.33466 3.39006 3.45209 3.64434 4.26309 4.46839 4.59132 4.66397 4.72754 4.88307 4.99319 5.07980 5.09356 5.25841 5.32304 5.42745 5.47819 5.51582 5.58072 5.71931 5.73483 5.86811 6.00867 6.10614 6.16341 6.22977 6.26551 6.29976 6.38802 6.58526 6.74873 6.89967 7.11570 7.51709 8.23039 8.23126 8.97074 9.49437 10.36149 11.19974 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.022426 B = 0.004110 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.265868 B = 6810.723049 C = 7655.554973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.018 4.018 3 C -0.163 4.163 4 C -0.228 4.228 5 C 0.586 3.414 6 O -0.538 6.538 7 N -0.717 5.717 8 C 0.153 3.847 9 H 0.091 0.909 10 C -0.158 4.158 11 C -0.140 4.140 12 C 0.135 3.865 13 N -0.629 5.629 14 C -0.304 4.304 15 H 0.083 0.917 16 C -0.025 4.025 17 N -0.935 5.935 18 Si 1.071 2.929 19 H -0.295 1.295 20 H -0.294 1.294 21 H -0.287 1.287 22 C 0.102 3.898 23 C 0.018 3.982 24 O -0.174 6.174 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.089 0.911 28 H 0.158 0.842 29 H 0.397 0.603 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.098 0.902 34 H 0.047 0.953 35 H 0.040 0.960 36 H 0.261 0.739 37 H 0.045 0.955 38 H 0.051 0.949 39 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.539 -1.642 13.542 25.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.067 4.067 3 C -0.182 4.182 4 C -0.232 4.232 5 C 0.373 3.627 6 O -0.415 6.415 7 N -0.368 5.368 8 C 0.048 3.952 9 H 0.109 0.891 10 C -0.217 4.217 11 C -0.160 4.160 12 C 0.008 3.992 13 N -0.357 5.357 14 C -0.430 4.430 15 H 0.101 0.899 16 C -0.224 4.224 17 N -0.577 5.577 18 Si 0.903 3.097 19 H -0.222 1.222 20 H -0.222 1.222 21 H -0.214 1.214 22 C -0.023 4.023 23 C -0.052 4.052 24 O -0.069 6.069 25 H 0.101 0.899 26 H 0.096 0.904 27 H 0.108 0.892 28 H 0.176 0.824 29 H 0.231 0.769 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.116 0.884 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -22.295 -1.599 12.039 25.388 hybrid contribution 1.175 0.246 1.304 1.772 sum -21.120 -1.353 13.343 25.019 Atomic orbital electron populations 1.20328 0.84681 1.04174 1.03757 1.22324 0.94157 0.83652 1.06547 1.22494 0.90024 0.99703 1.06004 1.21572 0.94821 0.93304 1.13547 1.17267 0.82223 0.87133 0.76088 1.90779 1.87126 1.13624 1.50020 1.45969 1.05459 1.10200 1.75164 1.21038 0.82341 0.94815 0.96979 0.89078 1.22123 1.01942 1.01589 0.95997 1.23566 0.94889 0.99985 0.97546 1.22254 0.92196 0.95731 0.89069 1.45979 1.00691 1.72027 1.17026 1.20163 0.85400 1.43624 0.93803 0.89926 1.25718 1.05835 0.99221 0.91620 1.70912 0.98828 1.50707 1.37222 0.83709 0.74532 0.76187 0.75254 1.22211 1.22212 1.21397 1.22840 0.86908 0.99342 0.93210 1.24445 0.84274 0.95468 1.01012 1.83722 1.16483 1.35527 1.71212 0.89915 0.90425 0.89186 0.82399 0.76946 0.92554 0.91178 0.92488 0.88398 0.93486 0.94262 0.92928 0.93707 0.93083 0.77121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.39 10.40 36.01 0.37 -0.02 16 2 C -0.02 -0.17 7.28 -35.74 -0.26 -0.43 16 3 C -0.16 -1.81 10.90 -37.45 -0.41 -2.22 16 4 C -0.23 -2.73 6.31 -103.27 -0.65 -3.39 16 5 C 0.59 8.38 7.78 -12.54 -0.10 8.28 16 6 O -0.54 -9.66 16.65 5.26 0.09 -9.57 16 7 N -0.72 -8.97 5.07 -54.90 -0.28 -9.24 16 8 C 0.15 2.17 2.47 -67.93 -0.17 2.00 16 9 H 0.09 1.49 7.32 -51.93 -0.38 1.11 16 10 C -0.16 -1.95 9.29 37.16 0.35 -1.61 16 11 C -0.14 -2.27 3.67 -89.96 -0.33 -2.60 16 12 C 0.13 2.58 7.33 -8.50 -0.06 2.51 16 13 N -0.63 -15.52 3.69 -184.57 -0.68 -16.20 16 14 C -0.30 -8.84 11.08 -15.06 -0.17 -9.01 16 15 H 0.08 2.52 8.06 -52.49 -0.42 2.10 16 16 C -0.03 -0.76 5.50 -17.43 -0.10 -0.86 16 17 N -0.93 -29.81 13.70 55.49 0.76 -29.05 16 18 Si 1.07 27.20 25.16 -169.99 -4.28 22.93 16 19 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 20 H -0.29 -6.95 6.51 56.52 0.37 -6.59 16 21 H -0.29 -6.93 6.21 56.52 0.35 -6.58 16 22 C 0.10 2.16 5.27 -8.36 -0.04 2.11 16 23 C 0.02 0.17 11.61 30.08 0.35 0.52 16 24 O -0.17 -1.71 10.52 7.64 0.08 -1.63 16 25 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.16 1.65 8.06 -52.49 -0.42 1.23 16 29 H 0.40 3.80 7.57 -40.82 -0.31 3.49 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.84 7.48 -51.93 -0.39 0.45 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 34 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.04 0.73 8.10 -51.93 -0.42 0.31 16 36 H 0.26 8.20 8.73 -40.82 -0.36 7.84 16 37 H 0.05 0.97 7.44 -51.93 -0.39 0.58 16 38 H 0.05 1.10 4.73 -51.93 -0.25 0.86 16 39 H 0.21 1.15 7.47 -52.48 -0.39 0.76 16 LS Contribution 325.48 15.07 4.90 4.90 Total: -1.00 -36.24 325.48 -6.18 -42.43 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -5.56 Total: 0.15 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: -1.22 Total: -4.70 kcal Atomic # 7 Polarization: -54.30 SS G_CDS: -0.20 Total: -54.50 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: 0.17 Total: -11.21 kcal Atomic # 14 Polarization: 27.20 SS G_CDS: -4.28 Total: 22.93 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -36.24 -6.18 -42.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969544028.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.973 kcal (2) G-P(sol) polarization free energy of solvation -36.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds