Wall clock time and date at job start Tue Mar 31 2020 00:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.34175 * 125.43672 * 2 1 4 4 C 1.47025 * 105.95321 * 179.97438 * 3 2 1 5 5 C 1.47375 * 127.19517 * 179.97438 * 4 3 2 6 6 O 1.21616 * 119.99804 * 0.02562 * 5 4 3 7 7 N 1.34780 * 120.00097 * 180.02562 * 5 4 3 8 8 C 1.46496 * 119.99734 * 180.02562 * 7 5 4 9 9 H 1.08995 * 109.47552 * 324.99740 * 8 7 5 10 10 C 1.53008 * 109.47421 * 84.99427 * 8 7 5 11 11 C 1.52998 * 109.46930 * 204.99506 * 8 7 5 12 12 C 1.53504 * 114.20785 * 179.97438 * 11 8 7 13 13 N 1.47069 * 87.98363 * 220.34571 * 12 11 8 14 14 C 1.36941 * 136.05552 * 207.07801 * 13 12 11 15 15 H 1.08000 * 119.99396 * 7.56018 * 14 13 12 16 16 C 1.38806 * 119.99993 * 187.55101 * 14 13 12 17 17 N 1.31621 * 119.99759 * 174.37714 * 16 14 13 18 18 Si 1.86799 * 119.99972 * 354.38427 * 16 14 13 19 19 H 1.48501 * 109.46963 * 174.94900 * 18 16 14 20 20 H 1.48498 * 109.47184 * 294.94894 * 18 16 14 21 21 H 1.48507 * 109.47082 * 54.95224 * 18 16 14 22 22 C 1.47064 * 87.88742 * 27.34488 * 13 12 11 23 23 C 1.36421 * 105.61377 * 0.22532 * 4 3 2 24 24 O 1.33654 * 108.39731 * 359.63469 * 23 4 3 25 25 H 1.08997 * 109.47143 * 89.99793 * 1 2 3 26 26 H 1.09003 * 109.46756 * 209.99944 * 1 2 3 27 27 H 1.09001 * 109.46867 * 329.99938 * 1 2 3 28 28 H 1.07997 * 127.02432 * 0.02562 * 3 2 1 29 29 H 0.96996 * 120.00127 * 359.97438 * 7 5 4 30 30 H 1.09004 * 109.46240 * 60.00200 * 10 8 7 31 31 H 1.08998 * 109.47419 * 179.97438 * 10 8 7 32 32 H 1.08994 * 109.46942 * 300.00242 * 10 8 7 33 33 H 1.09002 * 113.41395 * 313.19707 * 11 8 7 34 34 H 1.08997 * 113.46758 * 105.56146 * 12 11 8 35 35 H 1.09000 * 113.51898 * 335.13170 * 12 11 8 36 36 H 0.96993 * 120.00423 * 354.88754 * 17 16 14 37 37 H 1.08993 * 113.47012 * 87.43421 * 22 13 12 38 38 H 1.09000 * 113.46758 * 217.87997 * 22 13 12 39 39 H 1.08005 * 125.80010 * 179.74824 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2850 1.0932 0.0000 4 6 3.6711 0.6028 0.0006 5 6 4.9025 1.4124 0.0003 6 8 4.8320 2.6265 0.0000 7 7 6.1069 0.8073 0.0005 8 6 7.3309 1.6121 0.0008 9 1 7.1722 2.5151 -0.5886 10 6 7.6878 1.9974 1.4379 11 6 8.4754 0.7999 -0.6086 12 6 9.8167 1.5445 -0.6625 13 7 10.0291 0.9588 -1.9947 14 6 11.1119 0.6246 -2.7635 15 1 12.1069 0.6775 -2.3469 16 6 10.9305 0.2177 -4.0781 17 7 11.9745 0.0031 -4.8505 18 14 9.2050 -0.0252 -4.7511 19 1 9.2787 -0.3392 -6.2006 20 1 8.5476 -1.1474 -4.0343 21 1 8.4170 1.2179 -4.5533 22 6 8.5671 0.8963 -2.1405 23 6 3.5790 -0.7583 -0.0042 24 8 2.2852 -1.0936 0.0005 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 1.9596 2.1230 0.0004 29 1 6.1631 -0.1611 0.0012 30 1 7.8466 1.0943 2.0273 31 1 8.5988 2.5958 1.4382 32 1 6.8724 2.5760 1.8720 33 1 8.5428 -0.2150 -0.2168 34 1 10.5342 1.2007 0.0824 35 1 9.7116 2.6294 -0.6770 36 1 12.8669 0.2000 -4.5256 37 1 8.1317 1.8101 -2.5446 38 1 8.2201 0.0001 -2.6548 39 1 4.4104 -1.4477 -0.0090 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969544028.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:16 Heat of formation + Delta-G solvation = 7.776723 kcal Electronic energy + Delta-G solvation = -21281.312112 eV Core-core repulsion = 17998.605083 eV Total energy + Delta-G solvation = -3282.707029 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.53196 -41.08770 -39.88143 -36.32147 -34.58043 -34.08772 -33.23359 -31.58322 -29.50742 -27.59751 -27.02843 -25.67833 -24.60585 -22.47747 -22.08842 -21.35516 -20.44637 -19.55519 -18.69862 -17.53766 -17.30799 -17.21498 -17.00329 -16.01987 -15.86948 -15.63799 -15.21517 -15.10228 -14.50045 -14.27582 -13.99587 -13.78313 -13.75126 -13.66741 -13.31820 -13.23994 -13.14306 -12.67406 -12.53451 -12.36824 -12.12808 -11.72679 -11.34365 -11.12104 -11.07991 -10.85501 -10.82307 -10.11359 -9.52654 -9.24642 -8.63212 -5.49553 0.36076 1.04374 1.35224 1.46317 1.64864 1.89593 2.11294 2.34123 2.51692 2.96732 3.16678 3.42933 3.64342 3.68114 3.85320 4.05910 4.19541 4.35288 4.40974 4.46963 4.56382 4.57290 4.65464 4.68282 4.74523 4.76887 4.80124 4.86369 4.91205 5.03564 5.13203 5.18395 5.28978 5.39316 5.40973 5.54039 5.93579 6.02307 6.55372 6.68321 7.21466 7.30892 8.25902 8.88433 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.022426 B = 0.004110 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.265868 B = 6810.723049 C = 7655.554973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.011 4.011 3 C -0.194 4.194 4 C -0.263 4.263 5 C 0.586 3.414 6 O -0.585 6.585 7 N -0.706 5.706 8 C 0.161 3.839 9 H 0.067 0.933 10 C -0.151 4.151 11 C -0.101 4.101 12 C 0.130 3.870 13 N -0.662 5.662 14 C -0.290 4.290 15 H 0.053 0.947 16 C -0.086 4.086 17 N -0.972 5.972 18 Si 1.108 2.892 19 H -0.305 1.305 20 H -0.262 1.262 21 H -0.272 1.272 22 C 0.092 3.908 23 C 0.043 3.957 24 O -0.177 6.177 25 H 0.094 0.906 26 H 0.091 0.909 27 H 0.102 0.898 28 H 0.153 0.847 29 H 0.414 0.586 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.048 0.952 33 H 0.123 0.877 34 H 0.059 0.941 35 H 0.048 0.952 36 H 0.247 0.753 37 H 0.040 0.960 38 H 0.052 0.948 39 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.160 -3.167 15.194 28.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.059 4.059 3 C -0.213 4.213 4 C -0.268 4.268 5 C 0.375 3.625 6 O -0.466 6.466 7 N -0.357 5.357 8 C 0.056 3.944 9 H 0.085 0.915 10 C -0.210 4.210 11 C -0.121 4.121 12 C 0.004 3.996 13 N -0.391 5.391 14 C -0.418 4.418 15 H 0.071 0.929 16 C -0.278 4.278 17 N -0.617 5.617 18 Si 0.934 3.066 19 H -0.233 1.233 20 H -0.188 1.188 21 H -0.198 1.198 22 C -0.033 4.033 23 C -0.027 4.027 24 O -0.072 6.072 25 H 0.112 0.888 26 H 0.110 0.890 27 H 0.121 0.879 28 H 0.171 0.829 29 H 0.251 0.749 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.067 0.933 33 H 0.141 0.859 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.070 0.930 39 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -24.940 -3.147 13.760 28.658 hybrid contribution 2.010 0.763 0.885 2.325 sum -22.930 -2.384 14.645 27.312 Atomic orbital electron populations 1.20524 0.82049 1.05515 1.04890 1.22902 0.95555 0.82835 1.04617 1.22630 0.90437 1.00278 1.07993 1.21496 0.94107 0.94504 1.16659 1.17574 0.83110 0.86731 0.75051 1.90752 1.87773 1.15705 1.52379 1.45785 1.04443 1.10992 1.74503 1.20796 0.82236 0.93691 0.97723 0.91474 1.22057 1.01769 1.02534 0.94604 1.23261 0.93805 1.01017 0.93987 1.22485 0.94111 0.96363 0.86621 1.46124 1.01330 1.72916 1.18704 1.20056 0.85925 1.41666 0.94151 0.92938 1.27027 1.08464 0.99783 0.92493 1.71010 0.98760 1.53655 1.38278 0.83267 0.71113 0.77813 0.74368 1.23310 1.18816 1.19791 1.23035 0.84479 0.99027 0.96751 1.25101 0.84894 0.94918 0.97803 1.83770 1.16813 1.35723 1.70916 0.88765 0.89033 0.87905 0.82948 0.74905 0.90414 0.90799 0.93252 0.85915 0.92308 0.93445 0.94427 0.94225 0.93023 0.73322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.59 10.40 71.24 0.74 0.15 16 2 C -0.01 -0.17 7.28 24.76 0.18 0.01 16 3 C -0.19 -4.13 10.90 23.65 0.26 -3.88 16 4 C -0.26 -5.84 6.31 -18.99 -0.12 -5.96 16 5 C 0.59 15.94 7.78 86.65 0.67 16.61 16 6 O -0.58 -21.01 16.65 -4.08 -0.07 -21.08 16 7 N -0.71 -15.58 5.07 -445.84 -2.26 -17.84 16 8 C 0.16 4.14 2.47 44.99 0.11 4.25 16 9 H 0.07 2.11 7.32 -2.39 -0.02 2.10 16 10 C -0.15 -3.30 9.29 71.98 0.67 -2.63 16 11 C -0.10 -2.95 3.67 -10.37 -0.04 -2.99 16 12 C 0.13 4.68 7.33 83.18 0.61 5.29 16 13 N -0.66 -31.84 3.69 -737.86 -2.72 -34.56 16 14 C -0.29 -17.07 11.08 84.03 0.93 -16.14 16 15 H 0.05 3.31 8.06 -2.91 -0.02 3.29 16 16 C -0.09 -5.22 5.50 84.86 0.47 -4.75 16 17 N -0.97 -63.72 13.70 21.65 0.30 -63.42 16 18 Si 1.11 54.34 25.16 68.60 1.73 56.07 16 19 H -0.30 -15.36 7.11 99.48 0.71 -14.65 16 20 H -0.26 -11.38 6.51 99.48 0.65 -10.73 16 21 H -0.27 -12.50 6.21 99.48 0.62 -11.89 16 22 C 0.09 3.64 5.27 83.27 0.44 4.07 16 23 C 0.04 0.65 11.61 67.40 0.78 1.43 16 24 O -0.18 -2.93 10.52 4.44 0.05 -2.89 16 25 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.15 3.25 8.06 -2.91 -0.02 3.23 16 29 H 0.41 6.15 7.57 -92.71 -0.70 5.45 16 30 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 31 H 0.07 1.56 7.48 -2.39 -0.02 1.54 16 32 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.12 3.06 8.14 -2.39 -0.02 3.04 16 34 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.05 1.67 8.10 -2.39 -0.02 1.65 16 36 H 0.25 16.21 8.73 -92.71 -0.81 15.40 16 37 H 0.04 1.64 7.44 -2.39 -0.02 1.62 16 38 H 0.05 2.06 4.73 -2.39 -0.01 2.04 16 39 H 0.25 1.44 7.47 -2.91 -0.02 1.42 16 Total: -1.00 -81.53 325.48 2.89 -78.64 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: 0.17 Total: 9.62 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: 5.70 Total: -4.54 kcal Atomic # 7 Polarization: -111.13 SS G_CDS: -4.69 Total: -115.82 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: -0.02 Total: -23.97 kcal Atomic # 14 Polarization: 54.34 SS G_CDS: 1.73 Total: 56.07 kcal Total: -81.53 2.89 -78.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969544028.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.414 kcal (2) G-P(sol) polarization free energy of solvation -81.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds