Wall clock time and date at job start Tue Mar 31 2020 00:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34177 * 125.43518 * 2 1 4 4 C 1.47022 * 105.95056 * 179.97438 * 3 2 1 5 5 C 1.47386 * 127.19023 * 179.97438 * 4 3 2 6 6 O 1.21607 * 120.00239 * 0.02562 * 5 4 3 7 7 N 1.34775 * 119.99684 * 179.97438 * 5 4 3 8 8 C 1.46506 * 119.99693 * 179.97438 * 7 5 4 9 9 H 1.08996 * 109.46660 * 35.00912 * 8 7 5 10 10 C 1.52997 * 109.47289 * 275.00198 * 8 7 5 11 11 C 1.52999 * 109.46684 * 155.00124 * 8 7 5 12 12 C 1.53945 * 113.74529 * 278.73866 * 11 8 7 13 13 N 1.47807 * 86.04084 * 222.08774 * 12 11 8 14 14 C 1.36936 * 134.45937 * 204.64279 * 13 12 11 15 15 H 1.08005 * 120.00346 * 179.86277 * 14 13 12 16 16 C 1.38811 * 119.99896 * 359.87268 * 14 13 12 17 17 N 1.31623 * 120.00001 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00199 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47234 * 59.99730 * 18 16 14 20 20 H 1.48496 * 109.47289 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47120 * 299.99995 * 18 16 14 22 22 C 1.47576 * 91.04962 * 24.54882 * 13 12 11 23 23 C 1.36417 * 105.61983 * 0.25733 * 4 3 2 24 24 O 1.33654 * 108.39278 * 359.57668 * 23 4 3 25 25 H 1.08997 * 109.47172 * 90.00331 * 1 2 3 26 26 H 1.08999 * 109.47224 * 210.00523 * 1 2 3 27 27 H 1.08999 * 109.47096 * 330.00287 * 1 2 3 28 28 H 1.07997 * 127.02571 * 0.02562 * 3 2 1 29 29 H 0.97000 * 120.00190 * 0.02562 * 7 5 4 30 30 H 1.09002 * 109.47153 * 179.97438 * 10 8 7 31 31 H 1.09001 * 109.46832 * 60.00146 * 10 8 7 32 32 H 1.09004 * 109.47261 * 300.00128 * 10 8 7 33 33 H 1.09002 * 112.94852 * 50.34103 * 11 8 7 34 34 H 1.08997 * 113.76654 * 336.35575 * 12 11 8 35 35 H 1.09002 * 113.76615 * 107.75050 * 12 11 8 36 36 H 0.96992 * 119.99763 * 180.02562 * 17 16 14 37 37 H 1.09006 * 113.77253 * 221.14869 * 22 13 12 38 38 H 1.09000 * 113.87108 * 89.76663 * 22 13 12 39 39 H 1.08001 * 125.80391 * 179.73833 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2849 1.0932 0.0000 4 6 3.6709 0.6028 0.0006 5 6 4.9025 1.4126 0.0003 6 8 4.8320 2.6266 0.0000 7 7 6.1067 0.8075 0.0015 8 6 7.3309 1.6123 0.0007 9 1 7.1718 2.5161 0.5889 10 6 7.6883 1.9955 -1.4367 11 6 8.4750 0.8009 0.6118 12 6 8.4818 0.8010 2.1512 13 7 9.9458 0.9725 2.0428 14 6 11.0081 0.6862 2.8581 15 1 12.0132 0.9152 2.5361 16 6 10.7930 0.1014 4.0985 17 7 9.5680 -0.1775 4.4912 18 14 12.2420 -0.2898 5.2106 19 1 12.9757 0.9620 5.5265 20 1 11.7484 -0.9047 6.4689 21 1 13.1539 -1.2373 4.5206 22 6 9.8034 1.5737 0.7026 23 6 3.5790 -0.7582 -0.0049 24 8 2.2852 -1.0935 0.0007 25 1 -0.3633 -0.0001 -1.0276 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3633 0.8900 0.5138 28 1 1.9595 2.1230 0.0004 29 1 6.1630 -0.1609 0.0022 30 1 8.5989 2.5948 -1.4373 31 1 6.8731 2.5736 -1.8720 32 1 7.8474 1.0917 -2.0249 33 1 8.5740 -0.1917 0.1725 34 1 7.9707 1.6565 2.5927 35 1 8.1811 -0.1496 2.5918 36 1 9.4178 -0.5858 5.3580 37 1 10.5561 1.2391 -0.0114 38 1 9.6815 2.6568 0.7157 39 1 4.4103 -1.4476 -0.0101 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969544029.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:19 Heat of formation + Delta-G solvation = 2.416707 kcal Electronic energy + Delta-G solvation = -21164.963637 eV Core-core repulsion = 17882.024181 eV Total energy + Delta-G solvation = -3282.939456 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.53092 -40.89298 -39.54963 -36.19454 -34.28802 -34.02630 -33.15565 -31.41779 -29.35375 -27.56573 -26.63245 -25.74818 -24.80396 -22.58624 -22.08150 -21.23927 -20.22744 -18.82531 -18.58318 -17.35839 -17.26216 -17.16310 -16.88386 -15.88857 -15.75939 -15.60917 -15.03034 -14.67231 -14.43470 -14.09492 -13.96450 -13.78309 -13.73135 -13.43013 -13.25802 -13.09410 -12.90050 -12.72517 -12.63757 -12.55259 -12.02631 -11.74670 -11.51364 -11.27829 -11.04051 -10.85273 -10.82794 -10.07477 -9.52505 -8.92193 -7.90331 -5.24091 0.36296 1.04489 1.45057 1.48679 1.54745 1.89485 2.14815 2.35693 2.47599 3.30106 3.37494 3.60558 3.68308 3.76019 3.94779 4.06862 4.29832 4.40357 4.48654 4.57019 4.59923 4.74797 4.75068 4.77181 4.83221 4.86591 4.90935 5.01478 5.09502 5.13599 5.25702 5.33296 5.41230 5.47108 5.55828 5.66286 5.93582 6.01906 6.57259 6.91621 7.22898 7.60976 8.56794 9.26263 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.023743 B = 0.003617 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.003992 B = 7739.084351 C = 8554.046882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.010 4.010 3 C -0.194 4.194 4 C -0.263 4.263 5 C 0.584 3.416 6 O -0.587 6.587 7 N -0.704 5.704 8 C 0.160 3.840 9 H 0.057 0.943 10 C -0.149 4.149 11 C -0.107 4.107 12 C 0.166 3.834 13 N -0.645 5.645 14 C -0.237 4.237 15 H 0.085 0.915 16 C -0.069 4.069 17 N -0.954 5.954 18 Si 0.980 3.020 19 H -0.280 1.280 20 H -0.295 1.295 21 H -0.272 1.272 22 C 0.130 3.870 23 C 0.042 3.958 24 O -0.176 6.176 25 H 0.098 0.902 26 H 0.090 0.910 27 H 0.101 0.899 28 H 0.153 0.847 29 H 0.412 0.588 30 H 0.075 0.925 31 H 0.046 0.954 32 H 0.077 0.923 33 H 0.110 0.890 34 H 0.000 1.000 35 H 0.044 0.956 36 H 0.248 0.752 37 H 0.067 0.933 38 H 0.042 0.958 39 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.685 -3.328 -13.599 21.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.059 4.059 3 C -0.214 4.214 4 C -0.267 4.267 5 C 0.373 3.627 6 O -0.469 6.469 7 N -0.355 5.355 8 C 0.054 3.946 9 H 0.075 0.925 10 C -0.207 4.207 11 C -0.127 4.127 12 C 0.041 3.959 13 N -0.371 5.371 14 C -0.365 4.365 15 H 0.103 0.897 16 C -0.262 4.262 17 N -0.603 5.603 18 Si 0.808 3.192 19 H -0.207 1.207 20 H -0.221 1.221 21 H -0.198 1.198 22 C 0.005 3.995 23 C -0.028 4.028 24 O -0.072 6.072 25 H 0.117 0.883 26 H 0.109 0.891 27 H 0.120 0.880 28 H 0.171 0.829 29 H 0.249 0.751 30 H 0.094 0.906 31 H 0.066 0.934 32 H 0.096 0.904 33 H 0.128 0.872 34 H 0.018 0.982 35 H 0.063 0.937 36 H 0.057 0.943 37 H 0.085 0.915 38 H 0.059 0.941 39 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -15.670 -2.870 -13.326 20.769 hybrid contribution 0.978 0.018 1.221 1.564 sum -14.693 -2.852 -12.105 19.249 Atomic orbital electron populations 1.20525 0.81854 1.05435 1.05057 1.22932 0.95615 0.82782 1.04539 1.22630 0.90325 1.00338 1.08082 1.21518 0.94180 0.94531 1.16511 1.17611 0.83187 0.86761 0.75093 1.90732 1.87810 1.15720 1.52635 1.45791 1.04585 1.10903 1.74190 1.20861 0.82539 0.93575 0.97585 0.92450 1.22049 1.01736 1.02471 0.94462 1.23445 0.93739 1.00035 0.95482 1.22189 0.83905 0.97484 0.92339 1.46433 1.02710 1.70511 1.17445 1.19428 0.87009 1.32938 0.97157 0.89741 1.25651 0.99262 1.02141 0.99116 1.70008 1.20393 1.48964 1.20936 0.85139 0.78373 0.77972 0.77767 1.20656 1.22094 1.19805 1.22682 0.94563 0.95787 0.86503 1.25053 0.84890 0.94917 0.97955 1.83764 1.16721 1.35729 1.70952 0.88316 0.89146 0.88049 0.82883 0.75149 0.90592 0.93441 0.90398 0.87226 0.98215 0.93743 0.94342 0.91489 0.94074 0.73554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.73 10.40 71.24 0.74 0.01 16 2 C -0.01 -0.19 7.28 24.76 0.18 -0.01 16 3 C -0.19 -4.72 10.90 23.65 0.26 -4.47 16 4 C -0.26 -6.85 6.31 -18.99 -0.12 -6.97 16 5 C 0.58 18.51 7.78 86.65 0.67 19.18 16 6 O -0.59 -23.58 16.64 -4.05 -0.07 -23.65 16 7 N -0.70 -19.12 5.07 -445.84 -2.26 -21.38 16 8 C 0.16 4.88 2.38 44.99 0.11 4.99 16 9 H 0.06 2.15 7.41 -2.39 -0.02 2.14 16 10 C -0.15 -3.72 9.31 71.98 0.67 -3.05 16 11 C -0.11 -3.69 3.47 -10.13 -0.04 -3.73 16 12 C 0.17 7.96 7.08 86.44 0.61 8.57 16 13 N -0.64 -33.28 3.70 -716.08 -2.65 -35.93 16 14 C -0.24 -13.43 10.70 84.03 0.90 -12.53 16 15 H 0.08 4.54 7.83 -2.91 -0.02 4.52 16 16 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 17 N -0.95 -58.26 11.39 21.65 0.25 -58.01 16 18 Si 0.98 46.05 29.55 68.60 2.03 48.07 16 19 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 20 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 21 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 22 C 0.13 5.03 7.64 86.49 0.66 5.70 16 23 C 0.04 0.79 11.61 67.39 0.78 1.57 16 24 O -0.18 -3.45 10.52 4.42 0.05 -3.40 16 25 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.15 3.68 8.06 -2.91 -0.02 3.66 16 29 H 0.41 8.45 7.57 -92.71 -0.70 7.75 16 30 H 0.08 1.78 7.52 -2.39 -0.02 1.77 16 31 H 0.05 1.27 8.14 -2.39 -0.02 1.26 16 32 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 33 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 34 H 0.00 0.00 7.99 -2.39 -0.02 -0.02 16 35 H 0.04 2.34 7.17 -2.39 -0.02 2.33 16 36 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 37 H 0.07 2.32 8.14 -2.38 -0.02 2.31 16 38 H 0.04 1.57 8.10 -2.39 -0.02 1.55 16 39 H 0.25 2.50 7.47 -2.91 -0.02 2.48 16 Total: -1.00 -78.17 332.98 3.59 -74.58 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: 0.35 Total: 13.96 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: 5.90 Total: 5.77 kcal Atomic # 7 Polarization: -110.66 SS G_CDS: -4.67 Total: -115.33 kcal Atomic # 8 Polarization: -27.03 SS G_CDS: -0.02 Total: -27.05 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.07 kcal Total: -78.17 3.59 -74.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969544029.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.994 kcal (2) G-P(sol) polarization free energy of solvation -78.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds