Wall clock time and date at job start Tue Mar 31 2020 01:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35134 * 126.44076 * 2 1 4 4 O 1.33927 * 108.76795 * 179.97438 * 3 2 1 5 5 C 1.34919 * 109.38474 * 359.97438 * 4 3 2 6 6 C 1.46656 * 125.98575 * 180.02562 * 5 4 3 7 7 O 1.21698 * 119.99725 * 180.02562 * 6 5 4 8 8 N 1.34780 * 120.00062 * 0.02770 * 6 5 4 9 9 C 1.46496 * 119.99734 * 180.02562 * 8 6 5 10 10 H 1.08995 * 109.47552 * 324.99740 * 9 8 6 11 11 C 1.53008 * 109.47421 * 84.99427 * 9 8 6 12 12 C 1.52998 * 109.46930 * 204.99506 * 9 8 6 13 13 C 1.53504 * 114.20785 * 179.97438 * 12 9 8 14 14 N 1.47069 * 87.98363 * 220.34571 * 13 12 9 15 15 C 1.36941 * 136.05552 * 207.07801 * 14 13 12 16 16 H 1.08000 * 119.99396 * 7.56018 * 15 14 13 17 17 C 1.38806 * 119.99993 * 187.55101 * 15 14 13 18 18 N 1.31621 * 119.99759 * 174.37714 * 17 15 14 19 19 Si 1.86799 * 119.99972 * 354.38427 * 17 15 14 20 20 H 1.48501 * 109.46963 * 174.94900 * 19 17 15 21 21 H 1.48498 * 109.47184 * 294.94894 * 19 17 15 22 22 H 1.48507 * 109.47082 * 54.95224 * 19 17 15 23 23 C 1.47064 * 87.88742 * 27.34488 * 14 13 12 24 24 C 1.36544 * 108.02460 * 0.26500 * 5 4 3 25 25 H 1.09001 * 109.47093 * 90.03283 * 1 2 3 26 26 H 1.09004 * 109.47171 * 210.02559 * 1 2 3 27 27 H 1.08996 * 109.47585 * 330.02614 * 1 2 3 28 28 H 1.07998 * 125.61658 * 359.95769 * 3 2 1 29 29 H 0.96996 * 120.00127 * 359.97438 * 8 6 5 30 30 H 1.09004 * 109.46240 * 60.00200 * 11 9 8 31 31 H 1.08991 * 109.47021 * 179.97438 * 11 9 8 32 32 H 1.08994 * 109.46942 * 300.00242 * 11 9 8 33 33 H 1.09002 * 113.41395 * 313.19707 * 12 9 8 34 34 H 1.08997 * 113.46758 * 105.56146 * 13 12 9 35 35 H 1.09000 * 113.51898 * 335.13170 * 13 12 9 36 36 H 0.96993 * 120.00423 * 354.88754 * 18 17 15 37 37 H 1.08993 * 113.47012 * 87.43421 * 23 14 13 38 38 H 1.09000 * 113.46758 * 217.87997 * 23 14 13 39 39 H 1.08000 * 126.64336 * 179.69933 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0871 0.0000 4 8 3.5857 0.6805 0.0006 5 6 3.6260 -0.6680 0.0015 6 6 4.8379 -1.4939 0.0029 7 8 4.7472 -2.7075 0.0032 8 7 6.0521 -0.9089 0.0039 9 6 7.2627 -1.7340 0.0047 10 1 7.0885 -2.6342 0.5939 11 6 7.6144 -2.1251 -1.4322 12 6 8.4199 -0.9409 0.6151 13 6 9.7486 -1.7077 0.6702 14 7 9.9695 -1.1257 2.0026 15 6 11.0570 -0.8095 2.7725 16 1 12.0513 -0.8790 2.3568 17 6 10.8812 -0.3997 4.0870 18 7 11.9278 -0.2025 4.8603 19 14 9.1593 -0.1281 4.7583 20 1 9.2369 0.1845 6.2080 21 1 8.5213 1.0048 4.0410 22 1 8.3509 -1.3580 4.5597 23 6 8.5086 -1.0389 2.1471 24 6 2.3408 -1.1292 -0.0045 25 1 -0.3633 -0.0006 -1.0277 26 1 -0.3634 -0.8898 0.5142 27 1 -0.3634 0.8902 0.5134 28 1 1.9770 2.1146 -0.0006 29 1 6.1245 0.0584 0.0033 30 1 7.7887 -1.2247 -2.0213 31 1 8.5152 -2.7385 -1.4315 32 1 6.7899 -2.6900 -1.8670 33 1 8.5045 0.0728 0.2234 34 1 10.4724 -1.3758 -0.0740 35 1 9.6255 -2.7907 0.6846 36 1 12.8172 -0.4142 4.5362 37 1 8.0576 -1.9453 2.5508 38 1 8.1760 -0.1370 2.6611 39 1 2.0268 -2.1625 -0.0100 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970303686.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:41 Heat of formation + Delta-G solvation = 34.551556 kcal Electronic energy + Delta-G solvation = -21331.540177 eV Core-core repulsion = 18049.994192 eV Total energy + Delta-G solvation = -3281.545985 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.92008 -39.87460 -38.51278 -35.21442 -34.41879 -32.46344 -31.33608 -30.19102 -27.77546 -27.54724 -25.48411 -24.38121 -23.10499 -21.34919 -20.93950 -20.24749 -19.28895 -18.02741 -17.47386 -16.59945 -16.50633 -16.30375 -15.33251 -14.79805 -14.57790 -13.88893 -13.82550 -13.77313 -13.49427 -13.31052 -13.16277 -13.01581 -12.86155 -12.33561 -12.03365 -11.91000 -11.84503 -11.54592 -10.95740 -10.68289 -10.41934 -10.35832 -10.12400 -9.96321 -9.32797 -9.13732 -9.03270 -8.90248 -8.77198 -7.16592 -6.29420 -3.23507 0.88313 2.05611 2.49883 3.08426 3.13995 3.40930 3.45746 3.65248 4.43061 4.49297 4.59902 4.65456 4.70319 4.87446 5.03213 5.10323 5.27409 5.35816 5.41280 5.47190 5.49944 5.54790 5.64974 5.70181 5.73485 5.84122 5.98556 6.11092 6.14072 6.22623 6.26207 6.28312 6.37424 6.47564 6.64669 6.90009 7.11891 7.42609 8.02598 8.23605 8.97624 9.49989 10.36556 11.20585 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.022511 B = 0.004164 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.536505 B = 6722.050993 C = 7560.623562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.196 4.196 3 C -0.011 4.011 4 O -0.161 6.161 5 C -0.071 4.071 6 C 0.601 3.399 7 O -0.522 6.522 8 N -0.708 5.708 9 C 0.151 3.849 10 H 0.093 0.907 11 C -0.159 4.159 12 C -0.140 4.140 13 C 0.135 3.865 14 N -0.629 5.629 15 C -0.304 4.304 16 H 0.083 0.917 17 C -0.025 4.025 18 N -0.934 5.934 19 Si 1.070 2.930 20 H -0.295 1.295 21 H -0.293 1.293 22 H -0.287 1.287 23 C 0.102 3.898 24 C -0.121 4.121 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.208 0.792 29 H 0.405 0.595 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.057 0.943 33 H 0.099 0.901 34 H 0.047 0.953 35 H 0.040 0.960 36 H 0.261 0.739 37 H 0.046 0.954 38 H 0.052 0.948 39 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.686 1.848 -13.582 25.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.197 4.197 3 C -0.081 4.081 4 O -0.056 6.056 5 C -0.123 4.123 6 C 0.387 3.613 7 O -0.400 6.400 8 N -0.358 5.358 9 C 0.046 3.954 10 H 0.111 0.889 11 C -0.217 4.217 12 C -0.160 4.160 13 C 0.008 3.992 14 N -0.357 5.357 15 C -0.430 4.430 16 H 0.101 0.899 17 C -0.224 4.224 18 N -0.577 5.577 19 Si 0.902 3.098 20 H -0.222 1.222 21 H -0.222 1.222 22 H -0.214 1.214 23 C -0.024 4.024 24 C -0.142 4.142 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.225 0.775 29 H 0.240 0.760 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.076 0.924 33 H 0.117 0.883 34 H 0.066 0.934 35 H 0.058 0.942 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -22.026 1.721 -12.077 25.179 hybrid contribution 0.726 -0.102 -1.313 1.504 sum -21.300 1.619 -13.390 25.211 Atomic orbital electron populations 1.20177 0.88647 1.02898 1.02266 1.20493 0.97711 0.92440 1.09058 1.24199 0.79968 1.00047 1.03859 1.84074 1.29317 1.21736 1.70473 1.22168 0.96301 0.80528 1.13342 1.16562 0.81337 0.86401 0.76999 1.90879 1.85983 1.12202 1.50975 1.46052 1.05260 1.10961 1.73530 1.21121 0.82554 0.94502 0.97201 0.88882 1.22129 1.02049 1.01706 0.95821 1.23578 0.94715 1.00158 0.97581 1.22254 0.92206 0.95655 0.89085 1.45968 1.00646 1.72062 1.17012 1.20161 0.85127 1.43927 0.93777 0.89907 1.25713 1.05781 0.99245 0.91619 1.70913 0.98918 1.50620 1.37213 0.83719 0.74542 0.76228 0.75266 1.22197 1.22167 1.21396 1.22847 0.86955 0.99365 0.93186 1.21839 0.90567 1.00563 1.01233 0.91315 0.91262 0.91445 0.77496 0.76005 0.92430 0.90996 0.92425 0.88287 0.93442 0.94228 0.92929 0.93677 0.93029 0.82315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.50 10.39 36.00 0.37 -0.12 16 2 C -0.20 -1.75 6.14 -104.93 -0.64 -2.40 16 3 C -0.01 -0.09 12.00 29.63 0.36 0.26 16 4 O -0.16 -1.77 10.40 4.99 0.05 -1.72 16 5 C -0.07 -0.89 7.13 -36.80 -0.26 -1.16 16 6 C 0.60 8.64 7.75 -12.86 -0.10 8.54 16 7 O -0.52 -8.93 16.53 5.19 0.09 -8.84 16 8 N -0.71 -9.35 5.07 -55.12 -0.28 -9.63 16 9 C 0.15 2.15 2.47 -67.93 -0.17 1.98 16 10 H 0.09 1.49 7.32 -51.93 -0.38 1.11 16 11 C -0.16 -1.94 9.29 37.16 0.35 -1.60 16 12 C -0.14 -2.32 3.67 -89.96 -0.33 -2.65 16 13 C 0.14 2.59 7.33 -8.50 -0.06 2.53 16 14 N -0.63 -15.60 3.69 -184.57 -0.68 -16.28 16 15 C -0.30 -8.88 11.08 -15.06 -0.17 -9.04 16 16 H 0.08 2.53 8.06 -52.49 -0.42 2.11 16 17 C -0.02 -0.75 5.50 -17.43 -0.10 -0.85 16 18 N -0.93 -29.90 13.70 55.49 0.76 -29.14 16 19 Si 1.07 27.38 25.16 -169.99 -4.28 23.11 16 20 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 21 H -0.29 -7.06 6.51 56.52 0.37 -6.69 16 22 H -0.29 -6.96 6.21 56.52 0.35 -6.61 16 23 C 0.10 2.17 5.27 -8.36 -0.04 2.12 16 24 C -0.12 -1.36 10.57 -39.39 -0.42 -1.78 16 25 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.21 0.88 8.06 -52.49 -0.42 0.46 16 29 H 0.41 4.64 8.36 -40.82 -0.34 4.30 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.84 7.48 -51.93 -0.39 0.45 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 34 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.04 0.73 8.10 -51.93 -0.42 0.31 16 36 H 0.26 8.22 8.73 -40.82 -0.36 7.86 16 37 H 0.05 0.97 7.44 -51.93 -0.39 0.59 16 38 H 0.05 1.14 4.73 -51.93 -0.25 0.89 16 39 H 0.16 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 326.30 15.07 4.92 4.92 Total: -1.00 -34.80 326.30 -6.27 -41.07 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -5.63 Total: 0.67 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: -1.22 Total: -4.16 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: -0.20 Total: -55.04 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.14 Total: -10.56 kcal Atomic # 14 Polarization: 27.38 SS G_CDS: -4.28 Total: 23.11 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -34.80 -6.27 -41.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970303686.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.620 kcal (2) G-P(sol) polarization free energy of solvation -34.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds