Wall clock time and date at job start Tue Mar 31 2020 01:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35134 * 126.44076 * 2 1 4 4 O 1.33927 * 108.76795 * 179.97438 * 3 2 1 5 5 C 1.34919 * 109.38474 * 359.97438 * 4 3 2 6 6 C 1.46656 * 125.98575 * 180.02562 * 5 4 3 7 7 O 1.21698 * 119.99725 * 180.02562 * 6 5 4 8 8 N 1.34780 * 120.00062 * 0.02770 * 6 5 4 9 9 C 1.46496 * 119.99734 * 180.02562 * 8 6 5 10 10 H 1.08995 * 109.47552 * 324.99740 * 9 8 6 11 11 C 1.53008 * 109.47421 * 84.99427 * 9 8 6 12 12 C 1.52998 * 109.46930 * 204.99506 * 9 8 6 13 13 C 1.53504 * 114.20785 * 179.97438 * 12 9 8 14 14 N 1.47069 * 87.98363 * 220.34571 * 13 12 9 15 15 C 1.36941 * 136.05552 * 207.07801 * 14 13 12 16 16 H 1.08000 * 119.99396 * 7.56018 * 15 14 13 17 17 C 1.38806 * 119.99993 * 187.55101 * 15 14 13 18 18 N 1.31621 * 119.99759 * 174.37714 * 17 15 14 19 19 Si 1.86799 * 119.99972 * 354.38427 * 17 15 14 20 20 H 1.48501 * 109.46963 * 174.94900 * 19 17 15 21 21 H 1.48498 * 109.47184 * 294.94894 * 19 17 15 22 22 H 1.48507 * 109.47082 * 54.95224 * 19 17 15 23 23 C 1.47064 * 87.88742 * 27.34488 * 14 13 12 24 24 C 1.36544 * 108.02460 * 0.26500 * 5 4 3 25 25 H 1.09001 * 109.47093 * 90.03283 * 1 2 3 26 26 H 1.09004 * 109.47171 * 210.02559 * 1 2 3 27 27 H 1.08996 * 109.47585 * 330.02614 * 1 2 3 28 28 H 1.07998 * 125.61658 * 359.95769 * 3 2 1 29 29 H 0.96996 * 120.00127 * 359.97438 * 8 6 5 30 30 H 1.09004 * 109.46240 * 60.00200 * 11 9 8 31 31 H 1.08991 * 109.47021 * 179.97438 * 11 9 8 32 32 H 1.08994 * 109.46942 * 300.00242 * 11 9 8 33 33 H 1.09002 * 113.41395 * 313.19707 * 12 9 8 34 34 H 1.08997 * 113.46758 * 105.56146 * 13 12 9 35 35 H 1.09000 * 113.51898 * 335.13170 * 13 12 9 36 36 H 0.96993 * 120.00423 * 354.88754 * 18 17 15 37 37 H 1.08993 * 113.47012 * 87.43421 * 23 14 13 38 38 H 1.09000 * 113.46758 * 217.87997 * 23 14 13 39 39 H 1.08000 * 126.64336 * 179.69933 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0871 0.0000 4 8 3.5857 0.6805 0.0006 5 6 3.6260 -0.6680 0.0015 6 6 4.8379 -1.4939 0.0029 7 8 4.7472 -2.7075 0.0032 8 7 6.0521 -0.9089 0.0039 9 6 7.2627 -1.7340 0.0047 10 1 7.0885 -2.6342 0.5939 11 6 7.6144 -2.1251 -1.4322 12 6 8.4199 -0.9409 0.6151 13 6 9.7486 -1.7077 0.6702 14 7 9.9695 -1.1257 2.0026 15 6 11.0570 -0.8095 2.7725 16 1 12.0513 -0.8790 2.3568 17 6 10.8812 -0.3997 4.0870 18 7 11.9278 -0.2025 4.8603 19 14 9.1593 -0.1281 4.7583 20 1 9.2369 0.1845 6.2080 21 1 8.5213 1.0048 4.0410 22 1 8.3509 -1.3580 4.5597 23 6 8.5086 -1.0389 2.1471 24 6 2.3408 -1.1292 -0.0045 25 1 -0.3633 -0.0006 -1.0277 26 1 -0.3634 -0.8898 0.5142 27 1 -0.3634 0.8902 0.5134 28 1 1.9770 2.1146 -0.0006 29 1 6.1245 0.0584 0.0033 30 1 7.7887 -1.2247 -2.0213 31 1 8.5152 -2.7385 -1.4315 32 1 6.7899 -2.6900 -1.8670 33 1 8.5045 0.0728 0.2234 34 1 10.4724 -1.3758 -0.0740 35 1 9.6255 -2.7907 0.6846 36 1 12.8172 -0.4142 4.5362 37 1 8.0576 -1.9453 2.5508 38 1 8.1760 -0.1370 2.6611 39 1 2.0268 -2.1625 -0.0100 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970303686.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:41 Heat of formation + Delta-G solvation = 9.213772 kcal Electronic energy + Delta-G solvation = -21332.638906 eV Core-core repulsion = 18049.994192 eV Total energy + Delta-G solvation = -3282.644713 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.68388 -41.13612 -39.95601 -36.46511 -35.15499 -34.54315 -32.49789 -31.13962 -29.52139 -28.14927 -27.07580 -25.66217 -24.46940 -22.43302 -22.13707 -21.42896 -20.59594 -19.56908 -18.93371 -17.63652 -17.40246 -17.30763 -17.06347 -16.00335 -15.90740 -15.62758 -15.17677 -14.96904 -14.52834 -14.32393 -14.06645 -13.93463 -13.69565 -13.51031 -13.33250 -13.26176 -13.15711 -12.58240 -12.54428 -12.38632 -12.14977 -11.76289 -11.46554 -11.25316 -11.11686 -10.87779 -10.72261 -10.24438 -9.53612 -9.25339 -8.63814 -5.50119 0.02312 1.34924 1.34985 1.44716 1.63627 1.65825 2.08358 2.18297 2.50395 2.95561 3.15502 3.41396 3.69245 3.82293 3.83540 4.06650 4.16819 4.32661 4.36201 4.42763 4.55364 4.63719 4.65856 4.67121 4.77423 4.83954 4.89480 4.93309 5.00097 5.05269 5.09827 5.16852 5.27121 5.34055 5.46901 5.52589 5.85127 5.92909 6.42394 6.67675 6.99029 7.30133 8.25058 8.87907 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.022511 B = 0.004164 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.536505 B = 6722.050993 C = 7560.623562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.207 4.207 3 C 0.005 3.995 4 O -0.168 6.168 5 C -0.102 4.102 6 C 0.601 3.399 7 O -0.559 6.559 8 N -0.702 5.702 9 C 0.159 3.841 10 H 0.076 0.924 11 C -0.152 4.152 12 C -0.104 4.104 13 C 0.132 3.868 14 N -0.662 5.662 15 C -0.290 4.290 16 H 0.054 0.946 17 C -0.085 4.085 18 N -0.971 5.971 19 Si 1.107 2.893 20 H -0.303 1.303 21 H -0.268 1.268 22 H -0.270 1.270 23 C 0.091 3.909 24 C -0.125 4.125 25 H 0.078 0.922 26 H 0.067 0.933 27 H 0.086 0.914 28 H 0.251 0.749 29 H 0.415 0.585 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.053 0.947 33 H 0.117 0.883 34 H 0.059 0.941 35 H 0.052 0.948 36 H 0.247 0.753 37 H 0.044 0.956 38 H 0.048 0.952 39 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.687 3.086 -15.209 29.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.209 4.209 3 C -0.065 4.065 4 O -0.063 6.063 5 C -0.154 4.154 6 C 0.389 3.611 7 O -0.440 6.440 8 N -0.352 5.352 9 C 0.054 3.946 10 H 0.094 0.906 11 C -0.210 4.210 12 C -0.124 4.124 13 C 0.007 3.993 14 N -0.391 5.391 15 C -0.418 4.418 16 H 0.072 0.928 17 C -0.277 4.277 18 N -0.617 5.617 19 Si 0.934 3.066 20 H -0.231 1.231 21 H -0.194 1.194 22 H -0.196 1.196 23 C -0.033 4.033 24 C -0.146 4.146 25 H 0.096 0.904 26 H 0.086 0.914 27 H 0.105 0.895 28 H 0.267 0.733 29 H 0.252 0.748 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.072 0.928 33 H 0.135 0.865 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.056 0.944 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -25.047 2.964 -13.770 28.736 hybrid contribution 1.621 -0.495 -0.911 1.924 sum -23.426 2.469 -14.681 27.756 Atomic orbital electron populations 1.20255 0.86561 1.03829 1.03178 1.20853 0.99187 0.91684 1.09140 1.25115 0.78758 1.01714 1.00865 1.84061 1.30779 1.20783 1.70690 1.21807 0.95766 0.81333 1.16506 1.16749 0.81976 0.86181 0.76193 1.90850 1.86601 1.13765 1.52806 1.45933 1.04682 1.11373 1.73215 1.20913 0.82108 0.93453 0.98142 0.90633 1.22069 1.02140 1.02541 0.94272 1.23266 0.94061 1.00946 0.94121 1.22480 0.93848 0.96474 0.86544 1.46110 1.01211 1.73028 1.18735 1.20059 0.85696 1.41908 0.94107 0.92818 1.26990 1.08330 0.99867 0.92508 1.71006 0.98871 1.53530 1.38262 0.83265 0.71207 0.77742 0.74386 1.23144 1.19404 1.19558 1.23044 0.84626 0.99039 0.96639 1.22091 0.90855 1.01394 1.00226 0.90358 0.91389 0.89526 0.73294 0.74817 0.90736 0.90362 0.92787 0.86470 0.92297 0.92986 0.94380 0.93800 0.93377 0.82561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.73 10.39 71.23 0.74 0.01 16 2 C -0.21 -3.15 6.14 -20.06 -0.12 -3.27 16 3 C 0.00 0.06 12.00 67.10 0.81 0.87 16 4 O -0.17 -3.26 10.40 -5.05 -0.05 -3.31 16 5 C -0.10 -2.43 7.13 24.07 0.17 -2.26 16 6 C 0.60 16.68 7.75 86.44 0.67 17.35 16 7 O -0.56 -19.01 16.53 -4.34 -0.07 -19.08 16 8 N -0.70 -17.11 5.07 -446.52 -2.27 -19.37 16 9 C 0.16 4.17 2.47 44.99 0.11 4.28 16 10 H 0.08 2.31 7.32 -2.39 -0.02 2.30 16 11 C -0.15 -3.32 9.29 71.98 0.67 -2.65 16 12 C -0.10 -3.17 3.67 -10.37 -0.04 -3.21 16 13 C 0.13 4.80 7.33 83.18 0.61 5.41 16 14 N -0.66 -32.22 3.69 -737.86 -2.72 -34.94 16 15 C -0.29 -17.18 11.08 84.03 0.93 -16.25 16 16 H 0.05 3.40 8.06 -2.91 -0.02 3.38 16 17 C -0.09 -5.21 5.50 84.86 0.47 -4.74 16 18 N -0.97 -63.99 13.70 21.65 0.30 -63.69 16 19 Si 1.11 55.13 25.16 68.60 1.73 56.85 16 20 H -0.30 -15.42 7.11 99.48 0.71 -14.71 16 21 H -0.27 -12.05 6.51 99.48 0.65 -11.41 16 22 H -0.27 -12.50 6.21 99.48 0.62 -11.88 16 23 C 0.09 3.70 5.27 83.27 0.44 4.14 16 24 C -0.12 -2.65 10.57 22.39 0.24 -2.41 16 25 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 27 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.25 0.83 8.06 -2.91 -0.02 0.80 16 29 H 0.42 8.41 8.36 -92.71 -0.77 7.64 16 30 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 31 H 0.08 1.61 7.48 -2.39 -0.02 1.60 16 32 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.12 3.21 8.14 -2.39 -0.02 3.19 16 34 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.05 1.81 8.10 -2.39 -0.02 1.79 16 36 H 0.25 16.29 8.73 -92.71 -0.81 15.48 16 37 H 0.04 1.82 7.44 -2.39 -0.02 1.80 16 38 H 0.05 2.00 4.73 -2.39 -0.01 1.99 16 39 H 0.16 3.25 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -77.60 326.30 2.70 -74.90 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: 0.10 Total: 11.36 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: 5.69 Total: -2.72 kcal Atomic # 7 Polarization: -113.32 SS G_CDS: -4.69 Total: -118.01 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: -0.12 Total: -22.39 kcal Atomic # 14 Polarization: 55.13 SS G_CDS: 1.73 Total: 56.85 kcal Total: -77.60 2.70 -74.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970303686.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.118 kcal (2) G-P(sol) polarization free energy of solvation -77.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds