Wall clock time and date at job start Tue Mar 31 2020 01:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35133 * 126.44568 * 2 1 4 4 O 1.33925 * 108.76730 * 179.76293 * 3 2 1 5 5 C 1.34920 * 109.38546 * 0.38326 * 4 3 2 6 6 C 1.46658 * 125.98680 * 179.88353 * 5 4 3 7 7 O 1.21692 * 119.99942 * 179.69241 * 6 5 4 8 8 N 1.34777 * 120.00261 * 359.68634 * 6 5 4 9 9 C 1.46497 * 120.00376 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.46725 * 35.00314 * 9 8 6 11 11 C 1.52997 * 109.47188 * 275.00479 * 9 8 6 12 12 C 1.52992 * 109.47081 * 155.00022 * 9 8 6 13 13 C 1.53953 * 113.74647 * 278.74078 * 12 9 8 14 14 N 1.47803 * 86.03866 * 222.08719 * 13 12 9 15 15 C 1.36940 * 134.45480 * 204.64597 * 14 13 12 16 16 H 1.08004 * 120.00062 * 179.86839 * 15 14 13 17 17 C 1.38806 * 119.99897 * 359.86583 * 15 14 13 18 18 N 1.31618 * 120.00303 * 0.02562 * 17 15 14 19 19 Si 1.86812 * 119.99830 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47043 * 89.99918 * 19 17 15 21 21 H 1.48500 * 109.46918 * 209.99906 * 19 17 15 22 22 H 1.48498 * 109.46796 * 329.99912 * 19 17 15 23 23 C 1.47580 * 91.05616 * 24.54814 * 14 13 12 24 24 C 1.36542 * 108.02120 * 359.61783 * 5 4 3 25 25 H 1.09002 * 109.47622 * 270.00538 * 1 2 3 26 26 H 1.09006 * 109.46609 * 30.00331 * 1 2 3 27 27 H 1.08998 * 109.47641 * 149.99784 * 1 2 3 28 28 H 1.08005 * 125.61276 * 359.97438 * 3 2 1 29 29 H 0.97006 * 119.99702 * 0.02562 * 8 6 5 30 30 H 1.09002 * 109.47153 * 299.99573 * 11 9 8 31 31 H 1.09001 * 109.46832 * 179.97438 * 11 9 8 32 32 H 1.09004 * 109.47261 * 59.99745 * 11 9 8 33 33 H 1.08997 * 112.94423 * 50.33745 * 12 9 8 34 34 H 1.08999 * 113.76379 * 336.35463 * 13 12 9 35 35 H 1.09004 * 113.76409 * 107.74717 * 13 12 9 36 36 H 0.96996 * 120.00162 * 180.02562 * 18 17 15 37 37 H 1.08999 * 113.77170 * 221.15419 * 23 14 13 38 38 H 1.09002 * 113.86789 * 89.76287 * 23 14 13 39 39 H 1.07999 * 126.64117 * 180.19073 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3098 1.0870 0.0000 4 8 3.5857 0.6803 0.0052 5 6 3.6260 -0.6682 0.0002 6 6 4.8378 -1.4943 0.0010 7 8 4.7470 -2.7078 0.0017 8 7 6.0521 -0.9094 0.0009 9 6 7.2626 -1.7345 0.0024 10 1 7.0889 -2.6353 -0.5863 11 6 7.6125 -2.1241 1.4399 12 6 8.4205 -0.9421 -0.6076 13 6 8.4284 -0.9416 -2.1471 14 7 9.8893 -1.1376 -2.0376 15 6 10.9567 -0.8687 -2.8521 16 1 11.9577 -1.1147 -2.5295 17 6 10.7523 -0.2800 -4.0924 18 7 9.5326 0.0202 -4.4854 19 14 12.2085 0.0862 -5.2039 20 1 12.4695 -1.0844 -6.0795 21 1 11.9048 1.2737 -6.0424 22 1 13.4084 0.3605 -4.3732 23 6 9.7359 -1.7369 -0.6977 24 6 2.3407 -1.1292 0.0001 25 1 -0.3634 0.0001 1.0277 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3634 -0.8899 -0.5138 28 1 1.9770 2.1146 -0.0004 29 1 6.1244 0.0580 0.0007 30 1 7.7862 -1.2233 2.0285 31 1 8.5130 -2.7384 1.4408 32 1 6.7875 -2.6887 1.8744 33 1 8.5357 0.0486 -0.1678 34 1 7.9034 -1.7884 -2.5893 35 1 8.1439 0.0140 -2.5875 36 1 9.3897 0.4313 -5.3523 37 1 10.4935 -1.4151 0.0169 38 1 9.5960 -2.8178 -0.7114 39 1 2.0265 -2.1625 -0.0004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970303688.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:46 Heat of formation + Delta-G solvation = 26.342670 kcal Electronic energy + Delta-G solvation = -21215.294018 eV Core-core repulsion = 17933.392069 eV Total energy + Delta-G solvation = -3281.901949 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -42.80190 -39.62050 -38.00183 -34.96438 -34.28971 -32.22781 -31.09976 -29.98007 -27.52146 -27.44127 -24.99976 -24.19165 -23.25335 -21.24265 -21.02546 -20.07101 -18.99941 -17.82414 -16.76354 -16.46405 -16.32281 -16.05913 -14.88372 -14.62557 -14.32522 -13.88503 -13.71070 -13.49953 -13.41624 -13.18595 -13.02621 -12.80181 -12.44089 -12.13246 -11.91550 -11.66338 -11.34396 -11.28192 -10.91348 -10.71752 -10.37304 -10.20912 -9.85744 -9.83039 -9.75645 -9.40621 -8.95878 -8.78148 -8.64145 -6.85882 -5.74771 -3.07191 1.01206 2.16645 2.62892 3.23158 3.31050 3.40271 3.44809 3.46894 4.46366 4.56464 4.59781 4.77344 5.05703 5.19114 5.27624 5.29083 5.35263 5.46895 5.54349 5.58734 5.65651 5.74994 5.78299 5.81911 5.95232 6.02330 6.22217 6.24791 6.35096 6.40601 6.55345 6.63796 6.71469 6.82229 7.25279 7.37806 7.57491 7.60700 7.99856 8.19371 9.06331 9.72740 10.61966 11.42253 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.023872 B = 0.003661 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.663923 B = 7647.087380 C = 8455.071153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.197 4.197 3 C -0.012 4.012 4 O -0.160 6.160 5 C -0.068 4.068 6 C 0.601 3.399 7 O -0.525 6.525 8 N -0.704 5.704 9 C 0.149 3.851 10 H 0.090 0.910 11 C -0.159 4.159 12 C -0.147 4.147 13 C 0.170 3.830 14 N -0.613 5.613 15 C -0.223 4.223 16 H 0.080 0.920 17 C -0.009 4.009 18 N -0.921 5.921 19 Si 0.912 3.088 20 H -0.289 1.289 21 H -0.290 1.290 22 H -0.281 1.281 23 C 0.131 3.869 24 C -0.124 4.124 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.208 0.792 29 H 0.405 0.595 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.054 0.946 33 H 0.089 0.911 34 H 0.027 0.973 35 H 0.072 0.928 36 H 0.253 0.747 37 H 0.045 0.955 38 H 0.035 0.965 39 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.813 1.987 12.139 20.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.198 4.198 3 C -0.082 4.082 4 O -0.055 6.055 5 C -0.120 4.120 6 C 0.386 3.614 7 O -0.403 6.403 8 N -0.353 5.353 9 C 0.045 3.955 10 H 0.108 0.892 11 C -0.217 4.217 12 C -0.167 4.167 13 C 0.045 3.955 14 N -0.339 5.339 15 C -0.351 4.351 16 H 0.097 0.903 17 C -0.205 4.205 18 N -0.568 5.568 19 Si 0.742 3.258 20 H -0.216 1.216 21 H -0.216 1.216 22 H -0.206 1.206 23 C 0.004 3.996 24 C -0.145 4.145 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.224 0.776 29 H 0.240 0.760 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.107 0.893 34 H 0.044 0.956 35 H 0.090 0.910 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.053 0.947 39 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -15.388 1.419 11.838 19.466 hybrid contribution 0.567 0.590 -0.788 1.136 sum -14.821 2.009 11.050 18.596 Atomic orbital electron populations 1.20169 0.88729 1.02842 1.02183 1.20478 0.97651 0.92483 1.09179 1.24177 0.80031 0.99997 1.03994 1.84080 1.29252 1.21776 1.70380 1.22213 0.96357 0.80490 1.12936 1.16561 0.81385 0.86374 0.77071 1.90867 1.85998 1.12243 1.51229 1.46031 1.05229 1.10965 1.73120 1.21194 0.82903 0.94679 0.96743 0.89155 1.22140 1.01836 1.01505 0.96227 1.23837 0.93832 0.99200 0.99852 1.22308 0.84779 1.00070 0.88381 1.45994 1.02625 1.69583 1.15689 1.19028 0.85842 1.33631 0.96558 0.90258 1.24787 0.96688 1.01522 0.97511 1.69818 1.18755 1.47413 1.20840 0.86127 0.81486 0.77549 0.80646 1.21631 1.21643 1.20628 1.22486 0.92974 0.95305 0.88794 1.21820 0.90601 1.00505 1.01546 0.91380 0.91496 0.91308 0.77568 0.76042 0.92613 0.91179 0.92690 0.89299 0.95566 0.90995 0.93677 0.93710 0.94702 0.82380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.56 10.39 36.00 0.37 -0.18 16 2 C -0.20 -1.95 6.14 -104.93 -0.64 -2.59 16 3 C -0.01 -0.11 12.00 29.63 0.36 0.24 16 4 O -0.16 -1.95 10.40 5.00 0.05 -1.89 16 5 C -0.07 -0.93 7.13 -36.80 -0.26 -1.19 16 6 C 0.60 9.45 7.75 -12.86 -0.10 9.35 16 7 O -0.52 -9.68 16.53 5.20 0.09 -9.59 16 8 N -0.70 -10.34 5.07 -55.13 -0.28 -10.62 16 9 C 0.15 2.35 2.38 -67.94 -0.16 2.19 16 10 H 0.09 1.62 7.41 -51.93 -0.38 1.23 16 11 C -0.16 -2.13 9.31 37.16 0.35 -1.79 16 12 C -0.15 -2.67 3.47 -89.69 -0.31 -2.98 16 13 C 0.17 4.02 7.08 -2.84 -0.02 4.00 16 14 N -0.61 -15.88 3.70 -177.68 -0.66 -16.53 16 15 C -0.22 -6.34 10.70 -15.06 -0.16 -6.50 16 16 H 0.08 2.17 7.83 -52.48 -0.41 1.76 16 17 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 18 N -0.92 -27.66 11.39 55.49 0.63 -27.03 16 19 Si 0.91 22.36 29.55 -169.99 -5.02 17.34 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 C 0.13 2.64 7.64 -2.96 -0.02 2.62 16 24 C -0.12 -1.53 10.57 -39.40 -0.42 -1.94 16 25 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.21 1.07 8.06 -52.48 -0.42 0.65 16 29 H 0.40 5.31 8.36 -40.82 -0.34 4.97 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.89 7.52 -51.93 -0.39 0.50 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 34 H 0.03 0.66 7.99 -51.93 -0.41 0.24 16 35 H 0.07 1.88 7.16 -51.93 -0.37 1.50 16 36 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 37 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.04 0.68 8.10 -51.93 -0.42 0.26 16 39 H 0.16 1.83 8.06 -52.49 -0.42 1.40 16 LS Contribution 333.81 15.07 5.03 5.03 Total: -1.00 -33.55 333.81 -6.96 -40.51 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -5.67 Total: 1.92 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: -1.12 Total: 0.88 kcal Atomic # 7 Polarization: -53.88 SS G_CDS: -0.31 Total: -54.18 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.14 Total: -11.49 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.55 -6.96 -40.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970303688.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.853 kcal (2) G-P(sol) polarization free energy of solvation -33.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds