Wall clock time and date at job start Tue Mar 31 2020 01:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35133 * 126.44568 * 2 1 4 4 O 1.33925 * 108.76730 * 179.76293 * 3 2 1 5 5 C 1.34920 * 109.38546 * 0.38326 * 4 3 2 6 6 C 1.46658 * 125.98680 * 179.88353 * 5 4 3 7 7 O 1.21692 * 119.99942 * 179.69241 * 6 5 4 8 8 N 1.34777 * 120.00261 * 359.68634 * 6 5 4 9 9 C 1.46497 * 120.00376 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.46725 * 35.00314 * 9 8 6 11 11 C 1.52997 * 109.47188 * 275.00479 * 9 8 6 12 12 C 1.52992 * 109.47081 * 155.00022 * 9 8 6 13 13 C 1.53953 * 113.74647 * 278.74078 * 12 9 8 14 14 N 1.47803 * 86.03866 * 222.08719 * 13 12 9 15 15 C 1.36940 * 134.45480 * 204.64597 * 14 13 12 16 16 H 1.08004 * 120.00062 * 179.86839 * 15 14 13 17 17 C 1.38806 * 119.99897 * 359.86583 * 15 14 13 18 18 N 1.31618 * 120.00303 * 0.02562 * 17 15 14 19 19 Si 1.86812 * 119.99830 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47043 * 89.99918 * 19 17 15 21 21 H 1.48500 * 109.46918 * 209.99906 * 19 17 15 22 22 H 1.48498 * 109.46796 * 329.99912 * 19 17 15 23 23 C 1.47580 * 91.05616 * 24.54814 * 14 13 12 24 24 C 1.36542 * 108.02120 * 359.61783 * 5 4 3 25 25 H 1.09002 * 109.47622 * 270.00538 * 1 2 3 26 26 H 1.09006 * 109.46609 * 30.00331 * 1 2 3 27 27 H 1.08998 * 109.47641 * 149.99784 * 1 2 3 28 28 H 1.08005 * 125.61276 * 359.97438 * 3 2 1 29 29 H 0.97006 * 119.99702 * 0.02562 * 8 6 5 30 30 H 1.09002 * 109.47153 * 299.99573 * 11 9 8 31 31 H 1.09001 * 109.46832 * 179.97438 * 11 9 8 32 32 H 1.09004 * 109.47261 * 59.99745 * 11 9 8 33 33 H 1.08997 * 112.94423 * 50.33745 * 12 9 8 34 34 H 1.08999 * 113.76379 * 336.35463 * 13 12 9 35 35 H 1.09004 * 113.76409 * 107.74717 * 13 12 9 36 36 H 0.96996 * 120.00162 * 180.02562 * 18 17 15 37 37 H 1.08999 * 113.77170 * 221.15419 * 23 14 13 38 38 H 1.09002 * 113.86789 * 89.76287 * 23 14 13 39 39 H 1.07999 * 126.64117 * 180.19073 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3098 1.0870 0.0000 4 8 3.5857 0.6803 0.0052 5 6 3.6260 -0.6682 0.0002 6 6 4.8378 -1.4943 0.0010 7 8 4.7470 -2.7078 0.0017 8 7 6.0521 -0.9094 0.0009 9 6 7.2626 -1.7345 0.0024 10 1 7.0889 -2.6353 -0.5863 11 6 7.6125 -2.1241 1.4399 12 6 8.4205 -0.9421 -0.6076 13 6 8.4284 -0.9416 -2.1471 14 7 9.8893 -1.1376 -2.0376 15 6 10.9567 -0.8687 -2.8521 16 1 11.9577 -1.1147 -2.5295 17 6 10.7523 -0.2800 -4.0924 18 7 9.5326 0.0202 -4.4854 19 14 12.2085 0.0862 -5.2039 20 1 12.4695 -1.0844 -6.0795 21 1 11.9048 1.2737 -6.0424 22 1 13.4084 0.3605 -4.3732 23 6 9.7359 -1.7369 -0.6977 24 6 2.3407 -1.1292 0.0001 25 1 -0.3634 0.0001 1.0277 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3634 -0.8899 -0.5138 28 1 1.9770 2.1146 -0.0004 29 1 6.1244 0.0580 0.0007 30 1 7.7862 -1.2233 2.0285 31 1 8.5130 -2.7384 1.4408 32 1 6.7875 -2.6887 1.8744 33 1 8.5357 0.0486 -0.1678 34 1 7.9034 -1.7884 -2.5893 35 1 8.1439 0.0140 -2.5875 36 1 9.3897 0.4313 -5.3523 37 1 10.4935 -1.4151 0.0169 38 1 9.5960 -2.8178 -0.7114 39 1 2.0265 -2.1625 -0.0004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970303688.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:44 Heat of formation + Delta-G solvation = 3.634739 kcal Electronic energy + Delta-G solvation = -21216.278707 eV Core-core repulsion = 17933.392069 eV Total energy + Delta-G solvation = -3282.886638 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.68274 -40.95406 -39.61452 -36.33889 -35.14171 -34.18886 -32.34833 -31.05197 -29.36920 -28.13434 -26.65996 -25.75200 -24.65906 -22.53131 -22.13450 -21.32904 -20.38559 -18.92689 -18.70426 -17.50617 -17.34250 -17.26424 -16.90803 -15.86515 -15.74484 -15.60593 -14.88960 -14.66991 -14.46614 -14.15398 -14.02666 -13.92653 -13.50851 -13.44662 -13.27694 -13.10396 -12.92702 -12.73250 -12.55411 -12.53333 -12.03250 -11.76510 -11.59112 -11.37698 -11.18168 -10.87528 -10.72228 -10.20832 -9.53080 -8.93162 -7.90989 -5.25012 0.02980 1.35232 1.44549 1.46999 1.55600 1.67768 2.09418 2.21629 2.46849 3.29306 3.36181 3.63067 3.77205 3.83951 3.91603 4.06559 4.27137 4.35609 4.45366 4.57227 4.66765 4.73258 4.80338 4.84516 4.89916 4.93150 5.00027 5.05377 5.06234 5.09904 5.24352 5.31996 5.38289 5.52178 5.53797 5.63478 5.86064 5.92531 6.44319 6.90657 7.00666 7.60209 8.55824 9.25893 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.023872 B = 0.003661 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.663923 B = 7647.087380 C = 8455.071153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.207 4.207 3 C 0.004 3.996 4 O -0.169 6.169 5 C -0.102 4.102 6 C 0.599 3.401 7 O -0.562 6.562 8 N -0.700 5.700 9 C 0.157 3.843 10 H 0.066 0.934 11 C -0.150 4.150 12 C -0.110 4.110 13 C 0.166 3.834 14 N -0.645 5.645 15 C -0.235 4.235 16 H 0.086 0.914 17 C -0.070 4.070 18 N -0.955 5.955 19 Si 0.980 3.020 20 H -0.289 1.289 21 H -0.294 1.294 22 H -0.265 1.265 23 C 0.132 3.868 24 C -0.125 4.125 25 H 0.079 0.921 26 H 0.086 0.914 27 H 0.067 0.933 28 H 0.252 0.748 29 H 0.413 0.587 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.051 0.949 33 H 0.105 0.895 34 H 0.004 0.996 35 H 0.041 0.959 36 H 0.247 0.753 37 H 0.067 0.933 38 H 0.046 0.954 39 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.204 3.161 13.613 21.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.208 4.208 3 C -0.066 4.066 4 O -0.064 6.064 5 C -0.154 4.154 6 C 0.387 3.613 7 O -0.443 6.443 8 N -0.349 5.349 9 C 0.053 3.947 10 H 0.084 0.916 11 C -0.208 4.208 12 C -0.130 4.130 13 C 0.040 3.960 14 N -0.371 5.371 15 C -0.364 4.364 16 H 0.104 0.896 17 C -0.263 4.263 18 N -0.604 5.604 19 Si 0.808 3.192 20 H -0.216 1.216 21 H -0.220 1.220 22 H -0.190 1.190 23 C 0.007 3.993 24 C -0.146 4.146 25 H 0.098 0.902 26 H 0.105 0.895 27 H 0.086 0.914 28 H 0.268 0.732 29 H 0.249 0.751 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.070 0.930 33 H 0.123 0.877 34 H 0.022 0.978 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.085 0.915 38 H 0.064 0.936 39 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -15.767 2.593 13.355 20.826 hybrid contribution 0.589 0.240 -1.226 1.382 sum -15.178 2.833 12.129 19.634 Atomic orbital electron populations 1.20256 0.86383 1.03835 1.03241 1.20863 0.99261 0.91581 1.09125 1.25132 0.78744 1.01767 1.00929 1.84065 1.30884 1.20822 1.70660 1.21826 0.95811 0.81329 1.16428 1.16790 0.82057 0.86220 0.76240 1.90831 1.86639 1.13786 1.53079 1.45938 1.04814 1.11289 1.72884 1.20975 0.82428 0.93334 0.98006 0.91619 1.22061 1.02103 1.02478 0.94130 1.23455 0.93951 1.00002 0.95577 1.22191 0.84049 0.97478 0.92274 1.46428 1.02779 1.70397 1.17508 1.19476 0.87042 1.32753 0.97094 0.89600 1.25672 0.99354 1.02094 0.99191 1.70022 1.20839 1.48687 1.20885 0.85053 0.78740 0.76859 0.78534 1.21597 1.22002 1.18951 1.22681 0.94307 0.95873 0.86436 1.22088 0.90775 1.01434 1.00324 0.90220 0.89504 0.91381 0.73229 0.75057 0.90717 0.90163 0.92984 0.87737 0.97846 0.94098 0.94362 0.91470 0.93626 0.82514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.88 10.39 71.24 0.74 -0.14 16 2 C -0.21 -3.69 6.14 -20.06 -0.12 -3.82 16 3 C 0.00 0.06 12.00 67.10 0.81 0.86 16 4 O -0.17 -3.91 10.40 -5.04 -0.05 -3.96 16 5 C -0.10 -2.81 7.13 24.07 0.17 -2.64 16 6 C 0.60 19.30 7.75 86.44 0.67 19.97 16 7 O -0.56 -21.48 16.53 -4.32 -0.07 -21.55 16 8 N -0.70 -20.58 5.07 -446.54 -2.27 -22.85 16 9 C 0.16 4.90 2.38 44.99 0.11 5.01 16 10 H 0.07 2.41 7.41 -2.39 -0.02 2.39 16 11 C -0.15 -3.74 9.31 71.98 0.67 -3.07 16 12 C -0.11 -3.92 3.47 -10.13 -0.04 -3.96 16 13 C 0.17 8.09 7.08 86.45 0.61 8.70 16 14 N -0.64 -33.63 3.70 -716.07 -2.65 -36.28 16 15 C -0.24 -13.43 10.70 84.03 0.90 -12.53 16 16 H 0.09 4.64 7.83 -2.91 -0.02 4.62 16 17 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 18 N -0.96 -59.05 11.39 21.65 0.25 -58.81 16 19 Si 0.98 46.41 29.55 68.60 2.03 48.43 16 20 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 21 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 22 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 23 C 0.13 5.16 7.64 86.49 0.66 5.82 16 24 C -0.13 -3.05 10.57 22.39 0.24 -2.81 16 25 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.09 0.61 8.14 -2.38 -0.02 0.59 16 27 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.25 1.49 8.06 -2.91 -0.02 1.47 16 29 H 0.41 10.67 8.36 -92.70 -0.77 9.90 16 30 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.08 1.85 7.52 -2.39 -0.02 1.83 16 32 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 33 H 0.10 3.45 8.14 -2.39 -0.02 3.43 16 34 H 0.00 0.20 7.99 -2.39 -0.02 0.18 16 35 H 0.04 2.23 7.16 -2.38 -0.02 2.21 16 36 H 0.25 14.87 8.31 -92.71 -0.77 14.09 16 37 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 38 H 0.05 1.72 8.10 -2.39 -0.02 1.70 16 39 H 0.16 3.71 8.06 -2.91 -0.02 3.68 16 Total: -1.00 -74.95 333.81 3.39 -71.56 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: 0.28 Total: 15.68 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: 5.88 Total: 7.77 kcal Atomic # 7 Polarization: -113.26 SS G_CDS: -4.67 Total: -117.93 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: -0.12 Total: -25.51 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.43 kcal Total: -74.95 3.39 -71.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970303688.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.195 kcal (2) G-P(sol) polarization free energy of solvation -74.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds