Wall clock time and date at job start Tue Mar 31 2020 00:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35125 * 125.61714 * 2 1 4 4 C 1.40362 * 107.11674 * 180.02562 * 3 2 1 5 5 C 1.36542 * 106.70866 * 359.97438 * 4 3 2 6 6 C 1.46659 * 125.98940 * 179.97438 * 5 4 3 7 7 O 1.21689 * 120.00224 * 0.02562 * 6 5 4 8 8 N 1.34779 * 119.99960 * 179.97438 * 6 5 4 9 9 C 1.47021 * 125.65131 * 359.96302 * 8 6 5 10 10 C 1.54316 * 107.27470 * 181.08948 * 9 8 6 11 11 C 1.55160 * 102.94080 * 22.19221 * 10 9 8 12 12 H 1.08998 * 111.03424 * 82.58785 * 11 10 9 13 13 N 1.46499 * 111.00254 * 206.42109 * 11 10 9 14 14 C 1.46496 * 119.99944 * 53.65259 * 13 11 10 15 15 C 1.36943 * 119.99948 * 233.64884 * 13 11 10 16 16 H 1.07992 * 120.00003 * 336.66592 * 15 13 11 17 17 C 1.38809 * 119.99689 * 156.66766 * 15 13 11 18 18 N 1.31620 * 120.00171 * 331.06262 * 17 15 13 19 19 Si 1.86804 * 119.99956 * 151.06857 * 17 15 13 20 20 H 1.48502 * 109.47206 * 179.97438 * 19 17 15 21 21 H 1.48501 * 109.46947 * 299.99888 * 19 17 15 22 22 H 1.48502 * 109.46730 * 59.99667 * 19 17 15 23 23 C 1.47426 * 125.64989 * 179.97438 * 8 6 5 24 24 O 1.33936 * 125.61654 * 180.32029 * 2 1 3 25 25 H 1.08999 * 109.46948 * 90.00540 * 1 2 3 26 26 H 1.09002 * 109.46992 * 210.00240 * 1 2 3 27 27 H 1.08996 * 109.47471 * 330.00458 * 1 2 3 28 28 H 1.08001 * 126.44404 * 0.02881 * 3 2 1 29 29 H 1.08007 * 126.64897 * 179.97438 * 4 3 2 30 30 H 1.08998 * 109.88001 * 300.51159 * 9 8 6 31 31 H 1.09002 * 109.88049 * 61.51428 * 9 8 6 32 32 H 1.08992 * 110.72503 * 263.82808 * 10 9 8 33 33 H 1.09003 * 110.72134 * 140.55481 * 10 9 8 34 34 H 1.09001 * 109.47066 * 272.73111 * 14 13 11 35 35 H 1.09000 * 109.47494 * 32.73306 * 14 13 11 36 36 H 1.08998 * 109.47352 * 152.73659 * 14 13 11 37 37 H 0.97001 * 119.99969 * 354.06093 * 18 17 15 38 38 H 1.08998 * 110.36598 * 36.99960 * 23 8 6 39 39 H 1.08996 * 110.36770 * 274.67929 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0985 0.0000 4 6 3.6250 0.6531 -0.0006 5 6 3.5823 -0.7117 -0.0004 6 6 4.7414 -1.6102 -0.0013 7 8 5.8680 -1.1500 -0.0020 8 7 4.5589 -2.9455 -0.0004 9 6 3.2592 -3.6328 0.0023 10 6 3.5429 -5.1494 0.0304 11 6 4.9790 -5.2236 0.6130 12 1 4.9632 -5.1653 1.7014 13 7 5.6654 -6.4377 0.1649 14 6 5.7550 -6.7431 -1.2651 15 6 6.2234 -7.2872 1.0827 16 1 6.4995 -6.9203 2.0601 17 6 6.4340 -8.6199 0.7567 18 7 5.6493 -9.2159 -0.1160 19 14 7.8309 -9.5677 1.5566 20 1 7.8415 -10.9611 1.0431 21 1 9.1231 -8.9109 1.2339 22 1 7.6382 -9.5846 3.0289 23 6 5.6295 -3.9591 -0.0018 24 8 2.2870 -1.0888 -0.0061 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5137 28 1 1.9612 2.1260 0.0004 29 1 4.5113 1.2703 -0.0011 30 1 2.6899 -3.3457 0.8863 31 1 2.7013 -3.3743 -0.8977 32 1 3.5132 -5.5661 -0.9763 33 1 2.8354 -5.6621 0.6821 34 1 4.8692 -7.2977 -1.5744 35 1 5.8183 -5.8141 -1.8318 36 1 6.6443 -7.3446 -1.4532 37 1 4.8730 -8.7517 -0.4664 38 1 6.4671 -3.6269 0.6116 39 1 5.9606 -4.1598 -1.0206 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971020797.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:24:11 Heat of formation + Delta-G solvation = 8.316659 kcal Electronic energy + Delta-G solvation = -21734.083848 eV Core-core repulsion = 18451.400233 eV Total energy + Delta-G solvation = -3282.683615 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.83641 -39.67364 -37.57446 -35.16006 -33.47368 -32.25015 -31.64527 -29.83069 -28.47183 -26.99990 -26.18132 -23.87384 -22.29102 -21.96375 -21.25017 -19.83554 -19.45455 -17.64298 -17.53644 -16.68651 -16.04437 -15.76155 -15.16722 -14.35725 -14.12333 -13.64406 -13.55723 -13.54222 -13.41415 -13.27438 -13.21084 -13.02677 -12.60160 -12.47710 -12.18917 -12.04046 -11.38716 -10.94498 -10.80339 -10.73353 -10.61005 -10.22508 -10.18024 -10.14274 -10.01587 -9.49618 -8.76753 -8.47738 -8.34081 -7.03381 -6.13140 -3.27385 0.96650 2.16586 2.47664 3.11281 3.21057 3.48867 3.53376 3.70677 4.33082 4.54344 4.62136 4.74344 4.91565 5.00930 5.08721 5.18763 5.25573 5.30907 5.41144 5.46451 5.52283 5.65044 5.67865 5.72744 5.83132 5.94467 6.15253 6.20634 6.24242 6.37389 6.43354 6.53720 6.73483 6.79421 6.84405 7.06789 7.56724 7.92447 8.10683 8.50395 9.03024 9.77799 10.14619 11.14492 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.036699 B = 0.003738 C = 0.003537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.774837 B = 7487.865368 C = 7914.673147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.011 3.989 3 C -0.224 4.224 4 C -0.124 4.124 5 C -0.068 4.068 6 C 0.610 3.390 7 O -0.527 6.527 8 N -0.603 5.603 9 C 0.106 3.894 10 C -0.153 4.153 11 C 0.174 3.826 12 H 0.081 0.919 13 N -0.587 5.587 14 C 0.131 3.869 15 C -0.365 4.365 16 H 0.061 0.939 17 C -0.017 4.017 18 N -0.909 5.909 19 Si 1.061 2.939 20 H -0.286 1.286 21 H -0.292 1.292 22 H -0.292 1.292 23 C 0.086 3.914 24 O -0.156 6.156 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.091 0.909 28 H 0.154 0.846 29 H 0.159 0.841 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.013 0.987 35 H 0.018 0.982 36 H 0.054 0.946 37 H 0.270 0.730 38 H 0.077 0.923 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.113 17.337 -0.815 20.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.042 4.042 3 C -0.243 4.243 4 C -0.145 4.145 5 C -0.120 4.120 6 C 0.398 3.602 7 O -0.407 6.407 8 N -0.335 5.335 9 C -0.017 4.017 10 C -0.193 4.193 11 C 0.064 3.936 12 H 0.100 0.900 13 N -0.308 5.308 14 C -0.014 4.014 15 C -0.493 4.493 16 H 0.079 0.921 17 C -0.220 4.220 18 N -0.548 5.548 19 Si 0.891 3.109 20 H -0.211 1.211 21 H -0.220 1.220 22 H -0.219 1.219 23 C -0.038 4.038 24 O -0.052 6.052 25 H 0.103 0.897 26 H 0.099 0.901 27 H 0.109 0.891 28 H 0.172 0.828 29 H 0.177 0.823 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.031 0.969 35 H 0.037 0.963 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.096 0.904 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.764 15.793 -0.806 18.585 hybrid contribution -0.911 1.743 -0.038 1.968 sum -10.675 17.537 -0.845 20.548 Atomic orbital electron populations 1.20395 0.84660 1.04443 1.03884 1.22843 0.94354 0.84357 1.02624 1.21556 0.92344 0.99691 1.10706 1.21915 0.98590 0.92885 1.01063 1.22088 0.81830 0.94483 1.13555 1.16187 0.85997 0.80276 0.77741 1.90870 1.22135 1.75445 1.52204 1.48361 1.09876 1.04437 1.70797 1.22091 0.84613 0.93534 1.01463 1.23242 1.00802 0.92325 1.02918 1.21446 0.88702 0.85997 0.97487 0.90038 1.43856 1.62825 1.21977 1.02107 1.21000 0.99901 0.96561 0.83938 1.19971 1.39570 0.91760 0.98020 0.92142 1.25791 1.02433 0.93431 1.00344 1.70799 1.13649 1.37794 1.32541 0.83590 0.76003 0.76064 0.75277 1.21123 1.21956 1.21920 1.23042 0.90281 0.88258 1.02179 1.84128 1.16022 1.34562 1.70521 0.89666 0.90116 0.89061 0.82809 0.82317 0.91471 0.91717 0.90663 0.90323 0.96859 0.96329 0.92708 0.91862 0.90446 0.91074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.45 10.41 36.00 0.37 -0.08 16 2 C 0.01 0.11 7.31 -35.42 -0.26 -0.15 16 3 C -0.22 -2.26 10.77 -39.89 -0.43 -2.69 16 4 C -0.12 -1.57 10.62 -39.40 -0.42 -1.99 16 5 C -0.07 -1.00 6.95 -36.80 -0.26 -1.25 16 6 C 0.61 10.68 7.82 -12.86 -0.10 10.58 16 7 O -0.53 -10.63 17.12 5.20 0.09 -10.54 16 8 N -0.60 -10.30 3.33 -172.07 -0.57 -10.88 16 9 C 0.11 1.58 5.55 -3.07 -0.02 1.56 16 10 C -0.15 -2.58 6.51 -24.90 -0.16 -2.75 16 11 C 0.17 3.50 3.55 -65.77 -0.23 3.27 16 12 H 0.08 1.69 7.95 -51.93 -0.41 1.28 16 13 N -0.59 -14.18 2.84 -171.03 -0.49 -14.67 16 14 C 0.13 3.02 7.72 59.84 0.46 3.48 16 15 C -0.36 -9.94 9.43 -15.06 -0.14 -10.08 16 16 H 0.06 1.66 7.97 -52.49 -0.42 1.24 16 17 C -0.02 -0.47 4.63 -17.43 -0.08 -0.55 16 18 N -0.91 -26.59 12.70 55.49 0.70 -25.89 16 19 Si 1.06 24.90 30.01 -169.99 -5.10 19.80 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 23 C 0.09 1.63 6.49 -2.52 -0.02 1.61 16 24 O -0.16 -2.04 8.27 4.99 0.04 -2.00 16 25 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.15 1.10 8.06 -52.49 -0.42 0.67 16 29 H 0.16 1.86 8.06 -52.48 -0.42 1.43 16 30 H 0.07 0.93 7.69 -51.93 -0.40 0.53 16 31 H 0.06 0.89 7.77 -51.93 -0.40 0.49 16 32 H 0.07 1.32 6.99 -51.93 -0.36 0.96 16 33 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.01 0.32 6.68 -51.93 -0.35 -0.03 16 35 H 0.02 0.37 6.28 -51.93 -0.33 0.05 16 36 H 0.05 1.38 7.25 -51.93 -0.38 1.00 16 37 H 0.27 7.90 6.31 -40.82 -0.26 7.64 16 38 H 0.08 1.53 8.03 -51.93 -0.42 1.12 16 39 H 0.07 1.38 6.26 -51.93 -0.32 1.06 16 LS Contribution 321.21 15.07 4.84 4.84 Total: -1.00 -31.86 321.21 -7.14 -39.00 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -5.38 Total: -0.64 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: -1.28 Total: 0.97 kcal Atomic # 7 Polarization: -51.08 SS G_CDS: -0.35 Total: -51.43 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: 0.13 Total: -12.53 kcal Atomic # 14 Polarization: 24.90 SS G_CDS: -5.10 Total: 19.80 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.86 -7.14 -39.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971020797.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.315 kcal (2) G-P(sol) polarization free energy of solvation -31.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds