Wall clock time and date at job start Tue Mar 31 2020 00:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35125 * 125.61714 * 2 1 4 4 C 1.40362 * 107.11674 * 180.02562 * 3 2 1 5 5 C 1.36542 * 106.70866 * 359.97438 * 4 3 2 6 6 C 1.46659 * 125.98940 * 179.97438 * 5 4 3 7 7 O 1.21689 * 120.00224 * 0.02562 * 6 5 4 8 8 N 1.34779 * 119.99960 * 179.97438 * 6 5 4 9 9 C 1.47021 * 125.65131 * 359.96302 * 8 6 5 10 10 C 1.54316 * 107.27470 * 181.08948 * 9 8 6 11 11 C 1.55160 * 102.94080 * 22.19221 * 10 9 8 12 12 H 1.08998 * 111.03424 * 82.58785 * 11 10 9 13 13 N 1.46499 * 111.00254 * 206.42109 * 11 10 9 14 14 C 1.46496 * 119.99944 * 53.65259 * 13 11 10 15 15 C 1.36943 * 119.99948 * 233.64884 * 13 11 10 16 16 H 1.07992 * 120.00003 * 336.66592 * 15 13 11 17 17 C 1.38809 * 119.99689 * 156.66766 * 15 13 11 18 18 N 1.31620 * 120.00171 * 331.06262 * 17 15 13 19 19 Si 1.86804 * 119.99956 * 151.06857 * 17 15 13 20 20 H 1.48502 * 109.47206 * 179.97438 * 19 17 15 21 21 H 1.48501 * 109.46947 * 299.99888 * 19 17 15 22 22 H 1.48502 * 109.46730 * 59.99667 * 19 17 15 23 23 C 1.47426 * 125.64989 * 179.97438 * 8 6 5 24 24 O 1.33936 * 125.61654 * 180.32029 * 2 1 3 25 25 H 1.08999 * 109.46948 * 90.00540 * 1 2 3 26 26 H 1.09002 * 109.46992 * 210.00240 * 1 2 3 27 27 H 1.08996 * 109.47471 * 330.00458 * 1 2 3 28 28 H 1.08001 * 126.44404 * 0.02881 * 3 2 1 29 29 H 1.08007 * 126.64897 * 179.97438 * 4 3 2 30 30 H 1.08998 * 109.88001 * 300.51159 * 9 8 6 31 31 H 1.09002 * 109.88049 * 61.51428 * 9 8 6 32 32 H 1.08992 * 110.72503 * 263.82808 * 10 9 8 33 33 H 1.09003 * 110.72134 * 140.55481 * 10 9 8 34 34 H 1.09001 * 109.47066 * 272.73111 * 14 13 11 35 35 H 1.09000 * 109.47494 * 32.73306 * 14 13 11 36 36 H 1.08998 * 109.47352 * 152.73659 * 14 13 11 37 37 H 0.97001 * 119.99969 * 354.06093 * 18 17 15 38 38 H 1.08998 * 110.36598 * 36.99960 * 23 8 6 39 39 H 1.08996 * 110.36770 * 274.67929 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0985 0.0000 4 6 3.6250 0.6531 -0.0006 5 6 3.5823 -0.7117 -0.0004 6 6 4.7414 -1.6102 -0.0013 7 8 5.8680 -1.1500 -0.0020 8 7 4.5589 -2.9455 -0.0004 9 6 3.2592 -3.6328 0.0023 10 6 3.5429 -5.1494 0.0304 11 6 4.9790 -5.2236 0.6130 12 1 4.9632 -5.1653 1.7014 13 7 5.6654 -6.4377 0.1649 14 6 5.7550 -6.7431 -1.2651 15 6 6.2234 -7.2872 1.0827 16 1 6.4995 -6.9203 2.0601 17 6 6.4340 -8.6199 0.7567 18 7 5.6493 -9.2159 -0.1160 19 14 7.8309 -9.5677 1.5566 20 1 7.8415 -10.9611 1.0431 21 1 9.1231 -8.9109 1.2339 22 1 7.6382 -9.5846 3.0289 23 6 5.6295 -3.9591 -0.0018 24 8 2.2870 -1.0888 -0.0061 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5137 28 1 1.9612 2.1260 0.0004 29 1 4.5113 1.2703 -0.0011 30 1 2.6899 -3.3457 0.8863 31 1 2.7013 -3.3743 -0.8977 32 1 3.5132 -5.5661 -0.9763 33 1 2.8354 -5.6621 0.6821 34 1 4.8692 -7.2977 -1.5744 35 1 5.8183 -5.8141 -1.8318 36 1 6.6443 -7.3446 -1.4532 37 1 4.8730 -8.7517 -0.4664 38 1 6.4671 -3.6269 0.6116 39 1 5.9606 -4.1598 -1.0206 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971020797.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:24:09 Heat of formation + Delta-G solvation = -11.229349 kcal Electronic energy + Delta-G solvation = -21734.931427 eV Core-core repulsion = 18451.400233 eV Total energy + Delta-G solvation = -3283.531194 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -43.75145 -41.07351 -39.11282 -36.93625 -34.35964 -33.59492 -32.88650 -31.41278 -29.85700 -28.33531 -27.86738 -25.33073 -23.97571 -22.95172 -22.22296 -21.19290 -20.89524 -19.58553 -18.81771 -17.83975 -17.38398 -17.02705 -16.24307 -15.95340 -15.82737 -15.42094 -15.12549 -14.84647 -14.45254 -14.15918 -14.09139 -13.99535 -13.90034 -13.71388 -13.63239 -13.04198 -12.79921 -12.75891 -12.58515 -12.47871 -12.35196 -11.89754 -11.77674 -11.57927 -11.42362 -11.07859 -10.49045 -9.98809 -9.47178 -9.03597 -8.28467 -5.40650 -0.06606 1.30941 1.44070 1.59866 1.66390 1.85570 1.91896 1.99264 2.64314 3.14692 3.33328 3.37593 3.74590 3.76009 3.90361 3.93608 4.02258 4.15721 4.25800 4.47258 4.52710 4.55731 4.61483 4.68257 4.72728 4.73862 4.81017 4.84974 4.90873 5.03027 5.05903 5.12236 5.13479 5.25021 5.45315 5.80421 5.86863 6.25348 6.37075 6.77377 6.99669 7.72882 8.10598 8.97455 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.036699 B = 0.003738 C = 0.003537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.774837 B = 7487.865368 C = 7914.673147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.024 3.976 3 C -0.228 4.228 4 C -0.116 4.116 5 C -0.107 4.107 6 C 0.608 3.392 7 O -0.567 6.567 8 N -0.606 5.606 9 C 0.118 3.882 10 C -0.140 4.140 11 C 0.168 3.832 12 H 0.071 0.929 13 N -0.603 5.603 14 C 0.145 3.855 15 C -0.371 4.371 16 H 0.053 0.947 17 C -0.064 4.064 18 N -0.934 5.934 19 Si 1.109 2.891 20 H -0.291 1.291 21 H -0.284 1.284 22 H -0.276 1.276 23 C 0.099 3.901 24 O -0.166 6.166 25 H 0.102 0.898 26 H 0.086 0.914 27 H 0.117 0.883 28 H 0.187 0.813 29 H 0.161 0.839 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.006 0.994 35 H 0.044 0.956 36 H 0.026 0.974 37 H 0.259 0.741 38 H 0.061 0.939 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.177 19.190 -0.590 23.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.029 4.029 3 C -0.247 4.247 4 C -0.137 4.137 5 C -0.159 4.159 6 C 0.399 3.601 7 O -0.449 6.449 8 N -0.337 5.337 9 C -0.005 4.005 10 C -0.180 4.180 11 C 0.059 3.941 12 H 0.090 0.910 13 N -0.325 5.325 14 C 0.000 4.000 15 C -0.500 4.500 16 H 0.071 0.929 17 C -0.262 4.262 18 N -0.575 5.575 19 Si 0.934 3.066 20 H -0.217 1.217 21 H -0.210 1.210 22 H -0.201 1.201 23 C -0.026 4.026 24 O -0.063 6.063 25 H 0.120 0.880 26 H 0.104 0.896 27 H 0.135 0.865 28 H 0.205 0.795 29 H 0.179 0.821 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.089 0.911 33 H 0.104 0.896 34 H 0.024 0.976 35 H 0.063 0.937 36 H 0.045 0.955 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.864 17.683 -0.574 21.302 hybrid contribution -0.387 1.330 -0.102 1.389 sum -12.251 19.013 -0.675 22.628 Atomic orbital electron populations 1.20676 0.81297 1.06024 1.05402 1.23811 0.96035 0.83577 0.99448 1.21933 0.90830 1.01407 1.10500 1.22216 1.00199 0.92273 0.99040 1.21542 0.81975 0.94410 1.17947 1.16539 0.86587 0.80302 0.76704 1.90830 1.23938 1.76076 1.54053 1.48377 1.09984 1.04372 1.71013 1.22094 0.83776 0.91443 1.03150 1.23077 0.98372 0.94128 1.02417 1.21506 0.90597 0.84787 0.97169 0.91037 1.43975 1.63822 1.22586 1.02077 1.20813 0.98175 0.97140 0.83901 1.20178 1.39300 0.92256 0.98272 0.92889 1.27014 1.03860 0.94647 1.00678 1.70904 1.14231 1.38111 1.34284 0.82939 0.73734 0.74558 0.75397 1.21690 1.21021 1.20137 1.22686 0.90428 0.88273 1.01213 1.84093 1.15388 1.35842 1.70979 0.87965 0.89565 0.86458 0.79538 0.82087 0.89875 0.89879 0.91079 0.89571 0.97622 0.93744 0.95476 0.93038 0.92050 0.91690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.41 71.23 0.74 0.19 16 2 C 0.02 0.40 7.31 24.97 0.18 0.58 16 3 C -0.23 -3.84 10.77 22.07 0.24 -3.60 16 4 C -0.12 -2.77 10.62 22.39 0.24 -2.54 16 5 C -0.11 -3.06 6.95 24.07 0.17 -2.89 16 6 C 0.61 21.36 7.82 86.44 0.68 22.04 16 7 O -0.57 -23.43 17.12 -4.31 -0.07 -23.51 16 8 N -0.61 -20.56 3.33 -816.52 -2.72 -23.28 16 9 C 0.12 3.31 5.55 86.73 0.48 3.79 16 10 C -0.14 -4.62 6.51 31.78 0.21 -4.41 16 11 C 0.17 6.82 3.55 46.39 0.16 6.99 16 12 H 0.07 3.02 7.95 -2.39 -0.02 3.00 16 13 N -0.60 -29.61 2.84 -695.02 -1.97 -31.58 16 14 C 0.14 6.79 7.72 127.77 0.99 7.78 16 15 C -0.37 -20.53 9.43 84.03 0.79 -19.73 16 16 H 0.05 2.95 7.97 -2.91 -0.02 2.93 16 17 C -0.06 -3.59 4.63 84.86 0.39 -3.19 16 18 N -0.93 -55.62 12.70 21.65 0.28 -55.35 16 19 Si 1.11 50.64 30.01 68.60 2.06 52.70 16 20 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 21 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 22 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 23 C 0.10 3.78 6.49 86.86 0.56 4.34 16 24 O -0.17 -3.95 8.27 -5.07 -0.04 -3.99 16 25 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 26 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.12 0.29 8.14 -2.39 -0.02 0.27 16 28 H 0.19 1.80 8.06 -2.91 -0.02 1.78 16 29 H 0.16 3.63 8.06 -2.91 -0.02 3.61 16 30 H 0.08 2.11 7.69 -2.39 -0.02 2.09 16 31 H 0.08 2.09 7.77 -2.39 -0.02 2.07 16 32 H 0.07 2.42 6.99 -2.39 -0.02 2.41 16 33 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 34 H 0.01 0.28 6.68 -2.39 -0.02 0.26 16 35 H 0.04 1.81 6.28 -2.39 -0.01 1.80 16 36 H 0.03 1.39 7.25 -2.39 -0.02 1.37 16 37 H 0.26 15.53 6.31 -92.71 -0.58 14.95 16 38 H 0.06 2.52 8.03 -2.39 -0.02 2.50 16 39 H 0.06 2.55 6.26 -2.39 -0.01 2.54 16 Total: -1.00 -70.49 321.21 4.59 -65.90 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: 1.23 Total: 9.76 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: 5.83 Total: 9.35 kcal Atomic # 7 Polarization: -105.79 SS G_CDS: -4.41 Total: -110.21 kcal Atomic # 8 Polarization: -27.38 SS G_CDS: -0.12 Total: -27.50 kcal Atomic # 14 Polarization: 50.64 SS G_CDS: 2.06 Total: 52.70 kcal Total: -70.49 4.59 -65.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971020797.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.671 kcal (2) G-P(sol) polarization free energy of solvation -70.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds