Wall clock time and date at job start Tue Mar 31 2020 00:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35129 * 125.61717 * 2 1 4 4 C 1.40365 * 107.11823 * 179.97438 * 3 2 1 5 5 C 1.36545 * 106.70528 * 0.02562 * 4 3 2 6 6 C 1.46657 * 125.98202 * 179.97438 * 5 4 3 7 7 O 1.21693 * 120.00554 * 359.97438 * 6 5 4 8 8 N 1.34781 * 119.99384 * 179.97438 * 6 5 4 9 9 C 1.47422 * 125.65059 * 359.95204 * 8 6 5 10 10 C 1.54913 * 104.83249 * 204.16714 * 9 8 6 11 11 C 1.55152 * 101.58124 * 322.98961 * 10 9 8 12 12 H 1.09001 * 110.87703 * 277.06667 * 11 10 9 13 13 N 1.46507 * 110.71634 * 153.86429 * 11 10 9 14 14 C 1.46501 * 120.00088 * 305.02818 * 13 11 10 15 15 C 1.36936 * 119.99847 * 125.02955 * 13 11 10 16 16 H 1.08001 * 119.99671 * 341.07194 * 15 13 11 17 17 C 1.38803 * 119.99889 * 160.79797 * 15 13 11 18 18 N 1.31617 * 120.00425 * 346.78606 * 17 15 13 19 19 Si 1.86801 * 119.99964 * 166.78942 * 17 15 13 20 20 H 1.48503 * 109.47489 * 89.99706 * 19 17 15 21 21 H 1.48500 * 109.47549 * 210.00005 * 19 17 15 22 22 H 1.48501 * 109.47128 * 329.99706 * 19 17 15 23 23 C 1.47019 * 125.64721 * 179.97438 * 8 6 5 24 24 O 1.33935 * 125.61676 * 180.23866 * 2 1 3 25 25 H 1.08999 * 109.47064 * 90.00019 * 1 2 3 26 26 H 1.09003 * 109.46963 * 209.99745 * 1 2 3 27 27 H 1.09001 * 109.47370 * 330.00394 * 1 2 3 28 28 H 1.08008 * 126.44390 * 359.97438 * 3 2 1 29 29 H 1.08001 * 126.64841 * 180.02562 * 4 3 2 30 30 H 1.09000 * 110.36926 * 323.01040 * 9 8 6 31 31 H 1.09008 * 110.36207 * 85.22042 * 9 8 6 32 32 H 1.09003 * 111.00001 * 204.91610 * 10 9 8 33 33 H 1.08995 * 111.00561 * 81.07237 * 10 9 8 34 34 H 1.09004 * 109.46481 * 264.81569 * 14 13 11 35 35 H 1.09000 * 109.47205 * 24.81096 * 14 13 11 36 36 H 1.08991 * 109.47212 * 144.81639 * 14 13 11 37 37 H 0.97001 * 120.00682 * 180.02562 * 18 17 15 38 38 H 1.09010 * 109.88275 * 59.48379 * 23 8 6 39 39 H 1.09001 * 109.88607 * 298.32285 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0985 0.0000 4 6 3.6250 0.6531 0.0006 5 6 3.5823 -0.7116 0.0004 6 6 4.7415 -1.6100 0.0003 7 8 5.8681 -1.1498 -0.0001 8 7 4.5590 -2.9454 0.0005 9 6 3.2558 -3.6345 0.0019 10 6 3.5445 -5.0277 0.6148 11 6 4.9466 -5.3411 0.0291 12 1 4.8643 -5.7512 -0.9775 13 7 5.6796 -6.2606 0.9030 14 6 5.8773 -5.9273 2.3158 15 6 6.1799 -7.4315 0.3992 16 1 5.7931 -7.8296 -0.5272 17 6 7.1881 -8.1036 1.0762 18 7 7.8424 -7.5030 2.0475 19 14 7.6165 -9.8608 0.6088 20 1 8.6676 -9.8518 -0.4401 21 1 8.1176 -10.5833 1.8055 22 1 6.4047 -10.5442 0.0895 23 6 5.6267 -3.9561 0.0000 24 8 2.2870 -1.0888 -0.0045 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.9613 2.1261 -0.0004 29 1 4.5113 1.2703 0.0011 30 1 2.5395 -3.0903 0.6175 31 1 2.8796 -3.7366 -1.0161 32 1 2.8094 -5.7607 0.2823 33 1 3.5781 -4.9764 1.7030 34 1 6.8485 -5.4491 2.4438 35 1 5.0912 -5.2463 2.6420 36 1 5.8396 -6.8384 2.9128 37 1 8.5473 -7.9725 2.5205 38 1 6.2544 -3.8328 0.8826 39 1 6.2297 -3.8579 -0.9028 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971020799.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:24:16 Heat of formation + Delta-G solvation = 14.208866 kcal Electronic energy + Delta-G solvation = -21763.482325 eV Core-core repulsion = 18481.054215 eV Total energy + Delta-G solvation = -3282.428110 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.78314 -39.55458 -37.44597 -34.86524 -33.41470 -32.18061 -31.59255 -29.77297 -28.43485 -26.91435 -26.05230 -23.88130 -22.43611 -21.91571 -21.21107 -19.81818 -19.21681 -17.44658 -17.08140 -16.59011 -15.99017 -15.58604 -15.13741 -14.76234 -14.05385 -13.59584 -13.52652 -13.38774 -13.30430 -13.12721 -13.04737 -12.62267 -12.52573 -12.21342 -12.10306 -11.84492 -11.47009 -10.92457 -10.79936 -10.58168 -10.44052 -10.29591 -10.12558 -10.08557 -9.85378 -9.81848 -8.68954 -8.57991 -8.28384 -6.87147 -5.76424 -3.21373 1.03655 2.22591 2.53513 3.21942 3.31084 3.36927 3.43469 3.45110 4.38914 4.45915 4.67856 4.79740 5.01394 5.04429 5.11737 5.26488 5.29474 5.36467 5.53002 5.55447 5.60076 5.70705 5.74758 5.86812 5.93914 6.02413 6.26383 6.31670 6.36020 6.48283 6.60124 6.80496 6.84088 6.86812 7.37477 7.68419 7.69904 7.78843 8.21817 8.32732 9.17796 9.80429 10.27751 11.28169 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.038678 B = 0.003761 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.750575 B = 7443.208272 C = 7830.665940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.007 3.993 3 C -0.223 4.223 4 C -0.126 4.126 5 C -0.065 4.065 6 C 0.607 3.393 7 O -0.526 6.526 8 N -0.602 5.602 9 C 0.101 3.899 10 C -0.153 4.153 11 C 0.173 3.827 12 H 0.080 0.920 13 N -0.587 5.587 14 C 0.161 3.839 15 C -0.261 4.261 16 H 0.072 0.928 17 C 0.003 3.997 18 N -0.906 5.906 19 Si 0.908 3.092 20 H -0.287 1.287 21 H -0.290 1.290 22 H -0.280 1.280 23 C 0.086 3.914 24 O -0.157 6.157 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.090 0.910 28 H 0.153 0.847 29 H 0.159 0.841 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.030 0.970 35 H 0.001 0.999 36 H 0.049 0.951 37 H 0.254 0.746 38 H 0.076 0.924 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.782 13.675 -3.566 21.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.045 4.045 3 C -0.242 4.242 4 C -0.146 4.146 5 C -0.117 4.117 6 C 0.394 3.606 7 O -0.405 6.405 8 N -0.334 5.334 9 C -0.022 4.022 10 C -0.193 4.193 11 C 0.062 3.938 12 H 0.098 0.902 13 N -0.307 5.307 14 C 0.017 3.983 15 C -0.390 4.390 16 H 0.090 0.910 17 C -0.196 4.196 18 N -0.550 5.550 19 Si 0.737 3.263 20 H -0.214 1.214 21 H -0.216 1.216 22 H -0.205 1.205 23 C -0.038 4.038 24 O -0.053 6.053 25 H 0.103 0.897 26 H 0.098 0.902 27 H 0.109 0.891 28 H 0.171 0.829 29 H 0.176 0.824 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.048 0.952 35 H 0.019 0.981 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.095 0.905 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.085 13.535 -3.427 20.555 hybrid contribution 0.441 -0.606 -0.191 0.774 sum -14.645 12.929 -3.618 19.867 Atomic orbital electron populations 1.20384 0.84729 1.04385 1.03813 1.22839 0.94340 0.84464 1.02861 1.21549 0.92370 0.99651 1.10645 1.21914 0.98563 0.92939 1.01231 1.22161 0.81784 0.94538 1.13200 1.16256 0.85955 0.80389 0.77958 1.90877 1.22131 1.75458 1.52084 1.48456 1.09928 1.04392 1.70592 1.22443 0.84949 0.93834 1.00942 1.23367 1.00102 0.94040 1.01749 1.21355 0.89657 0.87710 0.95034 0.90181 1.43974 1.62922 1.18880 1.04904 1.20833 0.96008 0.97925 0.83583 1.19255 1.14529 0.97235 1.07985 0.90986 1.24994 0.96376 0.99177 0.99027 1.70099 1.23833 1.35684 1.25425 0.86217 0.78200 0.84429 0.77411 1.21400 1.21579 1.20504 1.23039 0.90099 0.88223 1.02459 1.84153 1.16082 1.34408 1.70620 0.89722 0.90159 0.89138 0.82882 0.82352 0.90591 0.91474 0.90218 0.90349 0.95196 0.98081 0.93268 0.93613 0.90531 0.91773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.45 10.41 36.00 0.37 -0.07 16 2 C 0.01 0.08 7.31 -35.42 -0.26 -0.18 16 3 C -0.22 -2.31 10.77 -39.89 -0.43 -2.74 16 4 C -0.13 -1.65 10.62 -39.39 -0.42 -2.07 16 5 C -0.06 -0.98 6.93 -36.80 -0.25 -1.24 16 6 C 0.61 11.03 7.82 -12.86 -0.10 10.92 16 7 O -0.53 -11.14 17.19 5.20 0.09 -11.06 16 8 N -0.60 -10.58 3.33 -172.06 -0.57 -11.15 16 9 C 0.10 1.47 6.16 -2.53 -0.02 1.46 16 10 C -0.15 -2.47 6.59 -24.58 -0.16 -2.63 16 11 C 0.17 3.43 3.44 -66.09 -0.23 3.20 16 12 H 0.08 1.55 7.91 -51.93 -0.41 1.14 16 13 N -0.59 -14.31 2.94 -171.39 -0.50 -14.82 16 14 C 0.16 3.93 7.73 59.85 0.46 4.39 16 15 C -0.26 -6.98 9.66 -15.06 -0.15 -7.13 16 16 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 17 C 0.00 0.08 5.11 -17.43 -0.09 -0.01 16 18 N -0.91 -26.19 10.50 55.49 0.58 -25.61 16 19 Si 0.91 21.54 29.57 -169.99 -5.03 16.51 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 C 0.09 1.71 6.51 -3.06 -0.02 1.69 16 24 O -0.16 -2.05 7.86 4.99 0.04 -2.01 16 25 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.15 1.13 8.06 -52.48 -0.42 0.71 16 29 H 0.16 1.94 8.06 -52.49 -0.42 1.52 16 30 H 0.08 1.02 6.23 -51.93 -0.32 0.70 16 31 H 0.07 0.88 8.14 -51.92 -0.42 0.45 16 32 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.08 1.35 6.14 -51.93 -0.32 1.03 16 34 H 0.03 0.80 7.36 -51.93 -0.38 0.42 16 35 H 0.00 0.02 6.13 -51.93 -0.32 -0.30 16 36 H 0.05 1.29 7.08 -51.93 -0.37 0.92 16 37 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 38 H 0.08 1.72 7.06 -51.92 -0.37 1.36 16 39 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 320.77 15.07 4.83 4.83 Total: -1.00 -31.78 320.77 -7.26 -39.03 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: -5.41 Total: -1.33 kcal Atomic # 6 Polarization: 6.88 SS G_CDS: -1.29 Total: 5.59 kcal Atomic # 7 Polarization: -51.08 SS G_CDS: -0.49 Total: -51.57 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: 0.13 Total: -13.07 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.03 Total: 16.51 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.78 -7.26 -39.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971020799.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.243 kcal (2) G-P(sol) polarization free energy of solvation -31.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds