Wall clock time and date at job start Tue Mar 31 2020 00:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35129 * 125.61717 * 2 1 4 4 C 1.40365 * 107.11823 * 179.97438 * 3 2 1 5 5 C 1.36545 * 106.70528 * 0.02562 * 4 3 2 6 6 C 1.46657 * 125.98202 * 179.97438 * 5 4 3 7 7 O 1.21693 * 120.00554 * 359.97438 * 6 5 4 8 8 N 1.34781 * 119.99384 * 179.97438 * 6 5 4 9 9 C 1.47422 * 125.65059 * 359.95204 * 8 6 5 10 10 C 1.54913 * 104.83249 * 204.16714 * 9 8 6 11 11 C 1.55152 * 101.58124 * 322.98961 * 10 9 8 12 12 H 1.09001 * 110.87703 * 277.06667 * 11 10 9 13 13 N 1.46507 * 110.71634 * 153.86429 * 11 10 9 14 14 C 1.46501 * 120.00088 * 305.02818 * 13 11 10 15 15 C 1.36936 * 119.99847 * 125.02955 * 13 11 10 16 16 H 1.08001 * 119.99671 * 341.07194 * 15 13 11 17 17 C 1.38803 * 119.99889 * 160.79797 * 15 13 11 18 18 N 1.31617 * 120.00425 * 346.78606 * 17 15 13 19 19 Si 1.86801 * 119.99964 * 166.78942 * 17 15 13 20 20 H 1.48503 * 109.47489 * 89.99706 * 19 17 15 21 21 H 1.48500 * 109.47549 * 210.00005 * 19 17 15 22 22 H 1.48501 * 109.47128 * 329.99706 * 19 17 15 23 23 C 1.47019 * 125.64721 * 179.97438 * 8 6 5 24 24 O 1.33935 * 125.61676 * 180.23866 * 2 1 3 25 25 H 1.08999 * 109.47064 * 90.00019 * 1 2 3 26 26 H 1.09003 * 109.46963 * 209.99745 * 1 2 3 27 27 H 1.09001 * 109.47370 * 330.00394 * 1 2 3 28 28 H 1.08008 * 126.44390 * 359.97438 * 3 2 1 29 29 H 1.08001 * 126.64841 * 180.02562 * 4 3 2 30 30 H 1.09000 * 110.36926 * 323.01040 * 9 8 6 31 31 H 1.09008 * 110.36207 * 85.22042 * 9 8 6 32 32 H 1.09003 * 111.00001 * 204.91610 * 10 9 8 33 33 H 1.08995 * 111.00561 * 81.07237 * 10 9 8 34 34 H 1.09004 * 109.46481 * 264.81569 * 14 13 11 35 35 H 1.09000 * 109.47205 * 24.81096 * 14 13 11 36 36 H 1.08991 * 109.47212 * 144.81639 * 14 13 11 37 37 H 0.97001 * 120.00682 * 180.02562 * 18 17 15 38 38 H 1.09010 * 109.88275 * 59.48379 * 23 8 6 39 39 H 1.09001 * 109.88607 * 298.32285 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0985 0.0000 4 6 3.6250 0.6531 0.0006 5 6 3.5823 -0.7116 0.0004 6 6 4.7415 -1.6100 0.0003 7 8 5.8681 -1.1498 -0.0001 8 7 4.5590 -2.9454 0.0005 9 6 3.2558 -3.6345 0.0019 10 6 3.5445 -5.0277 0.6148 11 6 4.9466 -5.3411 0.0291 12 1 4.8643 -5.7512 -0.9775 13 7 5.6796 -6.2606 0.9030 14 6 5.8773 -5.9273 2.3158 15 6 6.1799 -7.4315 0.3992 16 1 5.7931 -7.8296 -0.5272 17 6 7.1881 -8.1036 1.0762 18 7 7.8424 -7.5030 2.0475 19 14 7.6165 -9.8608 0.6088 20 1 8.6676 -9.8518 -0.4401 21 1 8.1176 -10.5833 1.8055 22 1 6.4047 -10.5442 0.0895 23 6 5.6267 -3.9561 0.0000 24 8 2.2870 -1.0888 -0.0045 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.9613 2.1261 -0.0004 29 1 4.5113 1.2703 0.0011 30 1 2.5395 -3.0903 0.6175 31 1 2.8796 -3.7366 -1.0161 32 1 2.8094 -5.7607 0.2823 33 1 3.5781 -4.9764 1.7030 34 1 6.8485 -5.4491 2.4438 35 1 5.0912 -5.2463 2.6420 36 1 5.8396 -6.8384 2.9128 37 1 8.5473 -7.9725 2.5205 38 1 6.2544 -3.8328 0.8826 39 1 6.2297 -3.8579 -0.9028 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971020799.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:24:15 Heat of formation + Delta-G solvation = -5.756056 kcal Electronic energy + Delta-G solvation = -21764.348069 eV Core-core repulsion = 18481.054215 eV Total energy + Delta-G solvation = -3283.293854 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -43.72421 -40.98578 -38.99977 -36.64881 -34.32391 -33.54448 -32.86825 -31.34982 -29.83528 -28.15776 -27.91543 -25.37705 -24.05464 -22.93576 -22.19679 -21.03489 -20.81321 -18.98763 -18.70899 -17.77869 -17.37277 -17.01280 -16.53446 -16.12610 -15.63288 -15.12665 -15.01141 -14.50775 -14.32914 -14.14210 -14.02194 -13.97487 -13.73699 -13.66937 -13.37636 -13.13945 -12.76156 -12.73066 -12.52983 -12.41709 -12.24531 -12.11905 -11.80649 -11.52163 -11.44838 -11.05208 -10.63881 -9.92423 -9.41697 -8.88478 -7.84005 -5.31508 -0.02775 1.34161 1.47009 1.48888 1.50748 1.59465 1.98743 2.03763 2.51474 3.27434 3.42324 3.50996 3.77668 3.83246 3.93401 4.01621 4.23240 4.27815 4.38755 4.52331 4.56089 4.65539 4.73808 4.74959 4.77806 4.85238 4.91686 4.97158 5.12876 5.16164 5.17837 5.27312 5.38421 5.48696 5.62152 5.70095 5.89503 6.28105 6.33852 6.83898 7.11349 7.81942 8.25753 9.19636 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.038678 B = 0.003761 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.750575 B = 7443.208272 C = 7830.665940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.024 3.976 3 C -0.229 4.229 4 C -0.120 4.120 5 C -0.104 4.104 6 C 0.603 3.397 7 O -0.573 6.573 8 N -0.605 5.605 9 C 0.109 3.891 10 C -0.138 4.138 11 C 0.167 3.833 12 H 0.089 0.911 13 N -0.601 5.601 14 C 0.181 3.819 15 C -0.266 4.266 16 H 0.083 0.917 17 C -0.056 4.056 18 N -0.942 5.942 19 Si 0.974 3.026 20 H -0.287 1.287 21 H -0.296 1.296 22 H -0.265 1.265 23 C 0.097 3.903 24 O -0.163 6.163 25 H 0.103 0.897 26 H 0.087 0.913 27 H 0.115 0.885 28 H 0.187 0.813 29 H 0.158 0.842 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.106 0.894 33 H 0.067 0.933 34 H -0.006 1.006 35 H 0.028 0.972 36 H 0.025 0.975 37 H 0.248 0.752 38 H 0.041 0.959 39 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.483 14.446 -4.662 24.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.028 4.028 3 C -0.247 4.247 4 C -0.141 4.141 5 C -0.155 4.155 6 C 0.393 3.607 7 O -0.456 6.456 8 N -0.336 5.336 9 C -0.013 4.013 10 C -0.177 4.177 11 C 0.058 3.942 12 H 0.107 0.893 13 N -0.322 5.322 14 C 0.036 3.964 15 C -0.396 4.396 16 H 0.101 0.899 17 C -0.251 4.251 18 N -0.589 5.589 19 Si 0.802 3.198 20 H -0.214 1.214 21 H -0.223 1.223 22 H -0.189 1.189 23 C -0.029 4.029 24 O -0.060 6.060 25 H 0.122 0.878 26 H 0.106 0.894 27 H 0.134 0.866 28 H 0.204 0.796 29 H 0.176 0.824 30 H 0.112 0.888 31 H 0.109 0.891 32 H 0.124 0.876 33 H 0.086 0.914 34 H 0.013 0.987 35 H 0.046 0.954 36 H 0.043 0.957 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.851 14.315 -4.553 24.104 hybrid contribution 1.453 -0.687 0.108 1.611 sum -17.398 13.628 -4.445 22.543 Atomic orbital electron populations 1.20679 0.81132 1.06040 1.05461 1.23836 0.96079 0.83580 0.99346 1.21921 0.90753 1.01452 1.10605 1.22204 1.00207 0.92368 0.99278 1.21509 0.81962 0.94317 1.17761 1.16667 0.86561 0.80586 0.76867 1.90832 1.24244 1.76277 1.54208 1.48485 1.10337 1.04192 1.70589 1.22578 0.83694 0.92411 1.02566 1.23235 0.97828 0.95688 1.00954 1.21563 0.90997 0.86511 0.95087 0.89319 1.44155 1.63322 1.19459 1.05309 1.20475 0.95126 0.96780 0.83998 1.19689 1.13943 0.97999 1.07953 0.89936 1.25816 0.96780 1.02999 0.99459 1.70289 1.24624 1.37022 1.26932 0.85173 0.78151 0.79872 0.76606 1.21437 1.22269 1.18912 1.22645 0.90491 0.89463 1.00257 1.84108 1.15253 1.35632 1.71012 0.87845 0.89383 0.86614 0.79617 0.82411 0.88839 0.89085 0.87605 0.91419 0.98728 0.95370 0.95668 0.94324 0.94062 0.92915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.51 10.41 71.24 0.74 0.23 16 2 C 0.02 0.40 7.31 24.97 0.18 0.59 16 3 C -0.23 -3.98 10.77 22.07 0.24 -3.74 16 4 C -0.12 -3.00 10.62 22.39 0.24 -2.76 16 5 C -0.10 -3.07 6.93 24.07 0.17 -2.90 16 6 C 0.60 22.36 7.82 86.44 0.68 23.04 16 7 O -0.57 -25.51 17.19 -4.33 -0.07 -25.58 16 8 N -0.60 -21.30 3.33 -816.49 -2.72 -24.02 16 9 C 0.11 2.92 6.16 86.86 0.54 3.46 16 10 C -0.14 -4.16 6.59 31.99 0.21 -3.95 16 11 C 0.17 6.58 3.44 46.18 0.16 6.73 16 12 H 0.09 3.33 7.91 -2.39 -0.02 3.31 16 13 N -0.60 -29.75 2.94 -696.15 -2.05 -31.80 16 14 C 0.18 9.17 7.73 127.77 0.99 10.15 16 15 C -0.27 -14.31 9.66 84.03 0.81 -13.50 16 16 H 0.08 4.18 7.81 -2.91 -0.02 4.16 16 17 C -0.06 -3.12 5.11 84.86 0.43 -2.68 16 18 N -0.94 -56.49 10.50 21.65 0.23 -56.26 16 19 Si 0.97 44.79 29.57 68.60 2.03 46.82 16 20 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 21 H -0.30 -13.80 7.11 99.48 0.71 -13.10 16 22 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16 23 C 0.10 3.97 6.51 86.73 0.56 4.53 16 24 O -0.16 -3.86 7.86 -5.07 -0.04 -3.90 16 25 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 26 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.12 0.26 8.14 -2.39 -0.02 0.24 16 28 H 0.19 1.91 8.06 -2.91 -0.02 1.89 16 29 H 0.16 3.83 8.06 -2.91 -0.02 3.81 16 30 H 0.09 2.24 6.23 -2.39 -0.01 2.23 16 31 H 0.09 2.06 8.14 -2.38 -0.02 2.04 16 32 H 0.11 2.70 8.14 -2.39 -0.02 2.68 16 33 H 0.07 2.22 6.14 -2.39 -0.01 2.20 16 34 H -0.01 -0.32 7.36 -2.38 -0.02 -0.34 16 35 H 0.03 1.24 6.13 -2.39 -0.01 1.22 16 36 H 0.02 1.36 7.08 -2.39 -0.02 1.34 16 37 H 0.25 14.48 8.31 -92.71 -0.77 13.70 16 38 H 0.04 1.97 7.06 -2.38 -0.02 1.96 16 39 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -72.57 320.77 4.37 -68.20 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: 1.05 Total: 7.35 kcal Atomic # 6 Polarization: 13.25 SS G_CDS: 5.94 Total: 19.20 kcal Atomic # 7 Polarization: -107.55 SS G_CDS: -4.53 Total: -112.08 kcal Atomic # 8 Polarization: -29.36 SS G_CDS: -0.11 Total: -29.48 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -72.57 4.37 -68.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971020799.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.441 kcal (2) G-P(sol) polarization free energy of solvation -72.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds