Wall clock time and date at job start Tue Mar 31 2020 00:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.33649 * 125.80264 * 2 1 4 4 C 1.34214 * 110.90668 * 180.02562 * 3 2 1 5 5 C 1.34175 * 109.12894 * 359.74488 * 4 3 2 6 6 C 1.36422 * 125.79973 * 180.02562 * 2 1 3 7 7 C 1.47376 * 127.18959 * 359.94773 * 6 2 1 8 8 O 1.21612 * 120.00547 * 0.02562 * 7 6 2 9 9 N 1.34777 * 119.99508 * 179.97438 * 7 6 2 10 10 C 1.47024 * 125.65137 * 0.02562 * 9 7 6 11 11 C 1.54327 * 107.27323 * 181.02095 * 10 9 7 12 12 C 1.55164 * 102.93894 * 22.19626 * 11 10 9 13 13 H 1.08999 * 111.00406 * 82.60922 * 12 11 10 14 14 N 1.46499 * 110.99788 * 206.42213 * 12 11 10 15 15 C 1.46498 * 120.00321 * 60.00622 * 14 12 11 16 16 C 1.36941 * 119.99940 * 239.99628 * 14 12 11 17 17 H 1.07997 * 119.99907 * 328.43814 * 16 14 12 18 18 C 1.38809 * 119.99919 * 148.43832 * 16 14 12 19 19 N 1.31620 * 119.99989 * 153.91531 * 18 16 14 20 20 Si 1.86797 * 119.99945 * 333.90639 * 18 16 14 21 21 H 1.48498 * 109.47232 * 94.93183 * 20 18 16 22 22 H 1.48503 * 109.47437 * 214.93438 * 20 18 16 23 23 H 1.48500 * 109.47513 * 334.93218 * 20 18 16 24 24 C 1.47428 * 125.64821 * 179.71710 * 9 7 6 25 25 H 1.09002 * 109.46937 * 269.97798 * 1 2 3 26 26 H 1.08999 * 109.46910 * 29.97690 * 1 2 3 27 27 H 1.08999 * 109.46953 * 149.97688 * 1 2 3 28 28 H 1.08005 * 125.43663 * 180.02562 * 4 3 2 29 29 H 1.07996 * 127.02765 * 180.27552 * 5 4 3 30 30 H 1.08995 * 109.88584 * 300.44013 * 10 9 7 31 31 H 1.09001 * 109.88131 * 61.45205 * 10 9 7 32 32 H 1.09000 * 110.71819 * 140.55778 * 11 10 9 33 33 H 1.08997 * 110.71827 * 263.65730 * 11 10 9 34 34 H 1.08999 * 109.47209 * 95.52845 * 15 14 12 35 35 H 1.08998 * 109.47086 * 215.53366 * 15 14 12 36 36 H 1.09008 * 109.46808 * 335.53054 * 15 14 12 37 37 H 0.96998 * 119.99883 * 180.02562 * 19 18 16 38 38 H 1.08999 * 110.36702 * 274.74751 * 24 9 7 39 39 H 1.09004 * 110.36428 * 37.06662 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.2889 1.0839 0.0000 4 6 3.5859 0.7389 -0.0006 5 6 3.6850 -0.5991 0.0047 6 6 2.3051 -1.1065 -0.0005 7 6 1.8739 -2.5158 -0.0001 8 8 0.6889 -2.7892 0.0004 9 7 2.7930 -3.5015 -0.0012 10 6 4.2512 -3.3136 -0.0023 11 6 4.8939 -4.7164 -0.0296 12 6 3.7639 -5.6051 -0.6135 13 1 3.7452 -5.5484 -1.7019 14 7 3.9027 -6.9928 -0.1650 15 6 3.8641 -7.3078 1.2651 16 6 4.0684 -7.9956 -1.0828 17 1 3.6167 -7.9131 -2.0602 18 6 4.8170 -9.1181 -0.7566 19 7 4.5830 -10.2636 -1.3612 20 14 6.1566 -9.0030 0.5400 21 1 5.6093 -9.4207 1.8558 22 1 7.2843 -9.8945 0.1674 23 1 6.6415 -7.6021 0.6279 24 6 2.5027 -4.9469 0.0050 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3633 -0.8898 -0.5142 28 1 4.4173 1.4284 -0.0003 29 1 4.5928 -1.1841 0.0098 30 1 4.5518 -2.7509 -0.8861 31 1 4.5570 -2.7807 0.8980 32 1 5.7683 -4.7273 -0.6803 33 1 5.1601 -5.0383 0.9772 34 1 2.8523 -7.6008 1.5455 35 1 4.5511 -8.1275 1.4753 36 1 4.1601 -6.4294 1.8388 37 1 5.1058 -11.0481 -1.1330 38 1 2.3499 -5.2988 1.0253 39 1 1.6256 -5.1603 -0.6060 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971038794.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:24:20 Heat of formation + Delta-G solvation = 23.822903 kcal Electronic energy + Delta-G solvation = -21862.528688 eV Core-core repulsion = 18580.517474 eV Total energy + Delta-G solvation = -3282.011214 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -42.71596 -39.68559 -37.53319 -35.06701 -33.19030 -32.13096 -31.68930 -30.23207 -28.43782 -27.04206 -26.25552 -24.38812 -22.89841 -21.96260 -21.18823 -19.47577 -18.90759 -17.42291 -17.05473 -16.52227 -16.17963 -16.08993 -15.35812 -15.10218 -14.18325 -13.95747 -13.72962 -13.35761 -13.26850 -13.14910 -13.04425 -12.84587 -12.54229 -12.45541 -12.30994 -11.91374 -11.87533 -11.37227 -10.92684 -10.85546 -10.56713 -10.21830 -10.01165 -9.91414 -9.81411 -9.55095 -8.80586 -8.57522 -8.34976 -7.01264 -6.05716 -3.41029 1.27338 1.92007 2.64495 3.16141 3.27443 3.40664 3.43261 3.47067 4.36165 4.47098 4.60008 4.71770 4.76582 5.06591 5.10866 5.15697 5.30128 5.32804 5.35412 5.39464 5.48640 5.63946 5.68271 5.74578 5.86390 6.00515 6.07901 6.12947 6.19085 6.26932 6.39430 6.45497 6.59274 6.67956 6.75455 6.87889 7.70152 7.92283 8.27494 8.31648 8.88246 9.64163 10.00202 11.09803 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.037328 B = 0.004028 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.934622 B = 6948.886655 C = 7375.970739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.073 3.927 3 O -0.178 6.178 4 C -0.045 4.045 5 C -0.195 4.195 6 C -0.237 4.237 7 C 0.601 3.399 8 O -0.547 6.547 9 N -0.605 5.605 10 C 0.101 3.899 11 C -0.160 4.160 12 C 0.173 3.827 13 H 0.088 0.912 14 N -0.595 5.595 15 C 0.108 3.892 16 C -0.274 4.274 17 H 0.083 0.917 18 C 0.035 3.965 19 N -0.894 5.894 20 Si 0.882 3.118 21 H -0.286 1.286 22 H -0.303 1.303 23 H -0.272 1.272 24 C 0.091 3.909 25 H 0.087 0.913 26 H 0.076 0.924 27 H 0.110 0.890 28 H 0.207 0.793 29 H 0.166 0.834 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.022 0.978 35 H 0.040 0.960 36 H 0.036 0.964 37 H 0.264 0.736 38 H 0.068 0.932 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.912 21.685 4.093 22.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.020 3.980 3 O -0.075 6.075 4 C -0.111 4.111 5 C -0.214 4.214 6 C -0.241 4.241 7 C 0.391 3.609 8 O -0.428 6.428 9 N -0.338 5.338 10 C -0.023 4.023 11 C -0.200 4.200 12 C 0.063 3.937 13 H 0.106 0.894 14 N -0.317 5.317 15 C -0.036 4.036 16 C -0.402 4.402 17 H 0.101 0.899 18 C -0.166 4.166 19 N -0.535 5.535 20 Si 0.713 3.287 21 H -0.215 1.215 22 H -0.231 1.231 23 H -0.197 1.197 24 C -0.033 4.033 25 H 0.106 0.894 26 H 0.095 0.905 27 H 0.128 0.872 28 H 0.223 0.777 29 H 0.184 0.816 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.040 0.960 35 H 0.058 0.942 36 H 0.054 0.946 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.639 21.652 4.054 22.089 hybrid contribution 1.324 -0.173 0.839 1.577 sum -0.315 21.479 4.892 22.031 Atomic orbital electron populations 1.20603 0.83760 1.05032 1.04340 1.22801 0.94091 0.83072 0.98058 1.83747 1.17218 1.35027 1.71482 1.23877 0.83484 0.96459 1.07282 1.23424 0.97353 0.94517 1.06063 1.21152 0.93335 0.93801 1.15853 1.16802 0.84598 0.83072 0.76447 1.90743 1.16170 1.83815 1.52033 1.48188 1.06571 1.06937 1.72140 1.22333 0.80266 0.98897 1.00787 1.23341 1.00378 0.93409 1.02885 1.21603 0.89947 0.84106 0.97995 0.89351 1.43984 1.84418 1.01288 1.01995 1.21349 0.99136 0.98117 0.85007 1.18806 1.27812 0.96023 0.97574 0.89894 1.25301 0.98070 0.95443 0.97752 1.69913 1.39720 0.99208 1.44637 0.86912 0.82997 0.77712 0.81057 1.21482 1.23142 1.19663 1.22934 1.00856 0.77764 1.01760 0.89438 0.90533 0.87209 0.77676 0.81646 0.91318 0.91754 0.90147 0.90808 0.95955 0.94191 0.94555 0.92600 0.91411 0.90385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.81 9.89 36.01 0.36 -0.46 16 2 C 0.07 0.89 7.37 -34.96 -0.26 0.63 16 3 O -0.18 -1.95 10.52 7.66 0.08 -1.87 16 4 C -0.05 -0.41 12.03 29.30 0.35 -0.05 16 5 C -0.19 -2.08 9.42 -37.45 -0.35 -2.44 16 6 C -0.24 -3.24 6.25 -103.27 -0.64 -3.88 16 7 C 0.60 9.88 7.84 -12.54 -0.10 9.78 16 8 O -0.55 -10.32 15.10 5.27 0.08 -10.24 16 9 N -0.61 -9.61 3.33 -171.66 -0.57 -10.18 16 10 C 0.10 1.31 5.00 -3.06 -0.02 1.30 16 11 C -0.16 -2.48 6.49 -24.89 -0.16 -2.64 16 12 C 0.17 3.26 3.55 -65.66 -0.23 3.03 16 13 H 0.09 1.72 7.96 -51.93 -0.41 1.30 16 14 N -0.60 -13.64 2.61 -170.89 -0.45 -14.09 16 15 C 0.11 2.31 8.32 59.85 0.50 2.80 16 16 C -0.27 -7.47 9.89 -15.06 -0.15 -7.62 16 17 H 0.08 2.42 8.06 -52.49 -0.42 2.00 16 18 C 0.04 0.99 5.29 -17.43 -0.09 0.90 16 19 N -0.89 -26.86 13.97 55.49 0.78 -26.08 16 20 Si 0.88 21.69 25.07 -169.99 -4.26 17.43 16 21 H -0.29 -6.88 6.62 56.52 0.37 -6.51 16 22 H -0.30 -7.60 7.11 56.52 0.40 -7.19 16 23 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 24 C 0.09 1.61 6.46 -2.41 -0.02 1.60 16 25 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.11 1.29 6.49 -51.93 -0.34 0.95 16 28 H 0.21 0.96 8.06 -52.48 -0.42 0.54 16 29 H 0.17 1.49 4.87 -52.49 -0.26 1.24 16 30 H 0.07 0.79 6.88 -51.93 -0.36 0.43 16 31 H 0.06 0.73 6.99 -51.93 -0.36 0.37 16 32 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.07 1.18 6.48 -51.93 -0.34 0.85 16 34 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.04 0.92 2.56 -51.93 -0.13 0.79 16 36 H 0.04 0.66 6.36 -51.92 -0.33 0.33 16 37 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 38 H 0.07 1.23 6.95 -51.93 -0.36 0.87 16 39 H 0.08 1.48 8.03 -51.93 -0.42 1.07 16 LS Contribution 309.79 15.07 4.67 4.67 Total: -1.00 -32.44 309.79 -5.49 -37.93 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -5.00 Total: -0.50 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: -0.81 Total: 2.95 kcal Atomic # 7 Polarization: -50.12 SS G_CDS: -0.24 Total: -50.36 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: 0.16 Total: -12.11 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.26 Total: 17.43 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.44 -5.49 -37.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971038794.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.750 kcal (2) G-P(sol) polarization free energy of solvation -32.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds