Wall clock time and date at job start Tue Mar 31 2020 00:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.33649 * 125.80264 * 2 1 4 4 C 1.34214 * 110.90668 * 180.02562 * 3 2 1 5 5 C 1.34175 * 109.12894 * 359.74488 * 4 3 2 6 6 C 1.36422 * 125.79973 * 180.02562 * 2 1 3 7 7 C 1.47376 * 127.18959 * 359.94773 * 6 2 1 8 8 O 1.21612 * 120.00547 * 0.02562 * 7 6 2 9 9 N 1.34777 * 119.99508 * 179.97438 * 7 6 2 10 10 C 1.47024 * 125.65137 * 0.02562 * 9 7 6 11 11 C 1.54327 * 107.27323 * 181.02095 * 10 9 7 12 12 C 1.55164 * 102.93894 * 22.19626 * 11 10 9 13 13 H 1.08999 * 111.00406 * 82.60922 * 12 11 10 14 14 N 1.46499 * 110.99788 * 206.42213 * 12 11 10 15 15 C 1.46498 * 120.00321 * 60.00622 * 14 12 11 16 16 C 1.36941 * 119.99940 * 239.99628 * 14 12 11 17 17 H 1.07997 * 119.99907 * 328.43814 * 16 14 12 18 18 C 1.38809 * 119.99919 * 148.43832 * 16 14 12 19 19 N 1.31620 * 119.99989 * 153.91531 * 18 16 14 20 20 Si 1.86797 * 119.99945 * 333.90639 * 18 16 14 21 21 H 1.48498 * 109.47232 * 94.93183 * 20 18 16 22 22 H 1.48503 * 109.47437 * 214.93438 * 20 18 16 23 23 H 1.48500 * 109.47513 * 334.93218 * 20 18 16 24 24 C 1.47428 * 125.64821 * 179.71710 * 9 7 6 25 25 H 1.09002 * 109.46937 * 269.97798 * 1 2 3 26 26 H 1.08999 * 109.46910 * 29.97690 * 1 2 3 27 27 H 1.08999 * 109.46953 * 149.97688 * 1 2 3 28 28 H 1.08005 * 125.43663 * 180.02562 * 4 3 2 29 29 H 1.07996 * 127.02765 * 180.27552 * 5 4 3 30 30 H 1.08995 * 109.88584 * 300.44013 * 10 9 7 31 31 H 1.09001 * 109.88131 * 61.45205 * 10 9 7 32 32 H 1.09000 * 110.71819 * 140.55778 * 11 10 9 33 33 H 1.08997 * 110.71827 * 263.65730 * 11 10 9 34 34 H 1.08999 * 109.47209 * 95.52845 * 15 14 12 35 35 H 1.08998 * 109.47086 * 215.53366 * 15 14 12 36 36 H 1.09008 * 109.46808 * 335.53054 * 15 14 12 37 37 H 0.96998 * 119.99883 * 180.02562 * 19 18 16 38 38 H 1.08999 * 110.36702 * 274.74751 * 24 9 7 39 39 H 1.09004 * 110.36428 * 37.06662 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.2889 1.0839 0.0000 4 6 3.5859 0.7389 -0.0006 5 6 3.6850 -0.5991 0.0047 6 6 2.3051 -1.1065 -0.0005 7 6 1.8739 -2.5158 -0.0001 8 8 0.6889 -2.7892 0.0004 9 7 2.7930 -3.5015 -0.0012 10 6 4.2512 -3.3136 -0.0023 11 6 4.8939 -4.7164 -0.0296 12 6 3.7639 -5.6051 -0.6135 13 1 3.7452 -5.5484 -1.7019 14 7 3.9027 -6.9928 -0.1650 15 6 3.8641 -7.3078 1.2651 16 6 4.0684 -7.9956 -1.0828 17 1 3.6167 -7.9131 -2.0602 18 6 4.8170 -9.1181 -0.7566 19 7 4.5830 -10.2636 -1.3612 20 14 6.1566 -9.0030 0.5400 21 1 5.6093 -9.4207 1.8558 22 1 7.2843 -9.8945 0.1674 23 1 6.6415 -7.6021 0.6279 24 6 2.5027 -4.9469 0.0050 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3633 -0.8898 -0.5142 28 1 4.4173 1.4284 -0.0003 29 1 4.5928 -1.1841 0.0098 30 1 4.5518 -2.7509 -0.8861 31 1 4.5570 -2.7807 0.8980 32 1 5.7683 -4.7273 -0.6803 33 1 5.1601 -5.0383 0.9772 34 1 2.8523 -7.6008 1.5455 35 1 4.5511 -8.1275 1.4753 36 1 4.1601 -6.4294 1.8388 37 1 5.1058 -11.0481 -1.1330 38 1 2.3499 -5.2988 1.0253 39 1 1.6256 -5.1603 -0.6060 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971038794.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:24:18 Heat of formation + Delta-G solvation = 1.894460 kcal Electronic energy + Delta-G solvation = -21863.479577 eV Core-core repulsion = 18580.517474 eV Total energy + Delta-G solvation = -3282.962103 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.54131 -40.97131 -38.96251 -36.71812 -34.22769 -33.67717 -32.81155 -31.63911 -29.78041 -28.18402 -27.86674 -25.76711 -24.39563 -23.03596 -22.19012 -21.01114 -19.85785 -19.03364 -18.45913 -17.85255 -17.33595 -17.21081 -16.72582 -16.45598 -15.62529 -15.24355 -14.87280 -14.81854 -14.64281 -14.39659 -14.15935 -14.02300 -13.90728 -13.83964 -13.68777 -13.36240 -13.02358 -12.67227 -12.47518 -12.36737 -12.24065 -12.03014 -11.60320 -11.42010 -11.09463 -10.80609 -10.62565 -9.83125 -9.44015 -8.91561 -8.21627 -5.54188 0.31077 1.15216 1.33091 1.44207 1.55785 1.76665 2.04337 2.26777 2.42864 2.99989 3.27049 3.52015 3.65155 3.79457 3.89260 4.01190 4.12128 4.27557 4.31353 4.38346 4.49568 4.56643 4.60950 4.66116 4.71335 4.75945 4.78902 4.90198 4.92714 4.98820 5.17513 5.21310 5.22420 5.31637 5.41406 5.86665 6.05780 6.13059 6.49326 6.90013 7.07254 7.58800 7.97357 8.98242 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.037328 B = 0.004028 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.934622 B = 6948.886655 C = 7375.970739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.069 3.931 3 O -0.179 6.179 4 C -0.028 4.028 5 C -0.208 4.208 6 C -0.267 4.267 7 C 0.594 3.406 8 O -0.585 6.585 9 N -0.608 5.608 10 C 0.106 3.894 11 C -0.148 4.148 12 C 0.166 3.834 13 H 0.073 0.927 14 N -0.607 5.607 15 C 0.106 3.894 16 C -0.267 4.267 17 H 0.044 0.956 18 C -0.023 4.023 19 N -0.946 5.946 20 Si 0.952 3.048 21 H -0.276 1.276 22 H -0.311 1.311 23 H -0.250 1.250 24 C 0.101 3.899 25 H 0.096 0.904 26 H 0.101 0.899 27 H 0.087 0.913 28 H 0.252 0.748 29 H 0.184 0.816 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.077 0.923 34 H 0.019 0.981 35 H 0.027 0.973 36 H 0.072 0.928 37 H 0.264 0.736 38 H 0.066 0.934 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.157 25.079 5.791 25.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.016 3.984 3 O -0.075 6.075 4 C -0.092 4.092 5 C -0.226 4.226 6 C -0.271 4.271 7 C 0.386 3.614 8 O -0.468 6.468 9 N -0.340 5.340 10 C -0.016 4.016 11 C -0.188 4.188 12 C 0.058 3.942 13 H 0.091 0.909 14 N -0.330 5.330 15 C -0.037 4.037 16 C -0.396 4.396 17 H 0.061 0.939 18 C -0.219 4.219 19 N -0.590 5.590 20 Si 0.781 3.219 21 H -0.204 1.204 22 H -0.240 1.240 23 H -0.174 1.174 24 C -0.024 4.024 25 H 0.114 0.886 26 H 0.120 0.880 27 H 0.105 0.895 28 H 0.268 0.732 29 H 0.201 0.799 30 H 0.109 0.891 31 H 0.111 0.889 32 H 0.110 0.890 33 H 0.096 0.904 34 H 0.038 0.962 35 H 0.045 0.955 36 H 0.091 0.909 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.447 25.113 5.769 25.771 hybrid contribution 0.558 -1.145 0.235 1.295 sum 1.004 23.968 6.004 24.729 Atomic orbital electron populations 1.20608 0.83050 1.05129 1.04917 1.23053 0.94862 0.83174 0.97348 1.83785 1.18150 1.34424 1.71171 1.24758 0.83414 0.96756 1.04302 1.23608 0.96413 0.95406 1.07201 1.21105 0.95596 0.92267 1.18162 1.17300 0.84153 0.84302 0.75637 1.90717 1.17756 1.84568 1.53716 1.48221 1.07971 1.05732 1.72093 1.22496 0.78030 0.97777 1.03304 1.23209 0.99190 0.93604 1.02800 1.21638 0.92156 0.82839 0.97542 0.90851 1.43989 1.84790 1.02097 1.02083 1.21413 0.98790 0.99251 0.84285 1.18685 1.26745 0.97265 0.96954 0.93858 1.25954 1.00222 0.94839 1.00909 1.70047 1.41173 1.00109 1.47693 0.85781 0.79193 0.78469 0.78468 1.20403 1.24048 1.17380 1.22608 0.99367 0.79505 1.00898 0.88578 0.88021 0.89452 0.73203 0.79883 0.89124 0.88854 0.89043 0.90448 0.96234 0.95523 0.90926 0.92710 0.91594 0.92880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.54 9.89 71.24 0.70 -0.84 16 2 C 0.07 1.55 7.37 25.26 0.19 1.74 16 3 O -0.18 -3.32 10.52 4.51 0.05 -3.27 16 4 C -0.03 -0.37 12.03 66.89 0.80 0.44 16 5 C -0.21 -3.64 9.42 23.65 0.22 -3.42 16 6 C -0.27 -6.79 6.25 -18.99 -0.12 -6.91 16 7 C 0.59 19.23 7.84 86.65 0.68 19.91 16 8 O -0.58 -22.61 15.10 -4.07 -0.06 -22.67 16 9 N -0.61 -18.51 3.33 -815.26 -2.71 -21.22 16 10 C 0.11 2.39 5.00 86.73 0.43 2.83 16 11 C -0.15 -4.13 6.49 31.79 0.21 -3.92 16 12 C 0.17 6.19 3.55 46.46 0.16 6.35 16 13 H 0.07 2.91 7.96 -2.39 -0.02 2.89 16 14 N -0.61 -27.67 2.61 -694.59 -1.82 -29.49 16 15 C 0.11 4.36 8.32 127.77 1.06 5.42 16 16 C -0.27 -14.95 9.89 84.03 0.83 -14.12 16 17 H 0.04 2.69 8.06 -2.91 -0.02 2.67 16 18 C -0.02 -1.30 5.29 84.86 0.45 -0.85 16 19 N -0.95 -58.77 13.97 21.65 0.30 -58.47 16 20 Si 0.95 44.68 25.07 68.60 1.72 46.40 16 21 H -0.28 -12.42 6.62 99.48 0.66 -11.77 16 22 H -0.31 -14.93 7.11 99.48 0.71 -14.22 16 23 H -0.25 -10.75 7.11 99.48 0.71 -10.05 16 24 C 0.10 3.59 6.46 86.93 0.56 4.15 16 25 H 0.10 1.63 8.14 -2.39 -0.02 1.62 16 26 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.09 2.10 6.49 -2.39 -0.02 2.08 16 28 H 0.25 0.80 8.06 -2.91 -0.02 0.78 16 29 H 0.18 2.39 4.87 -2.91 -0.01 2.38 16 30 H 0.09 1.71 6.88 -2.39 -0.02 1.69 16 31 H 0.09 1.66 6.99 -2.39 -0.02 1.64 16 32 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.08 2.14 6.48 -2.39 -0.02 2.13 16 34 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.03 1.18 2.56 -2.39 -0.01 1.17 16 36 H 0.07 2.42 6.36 -2.38 -0.02 2.41 16 37 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 38 H 0.07 2.36 6.95 -2.39 -0.02 2.34 16 39 H 0.05 2.12 8.03 -2.38 -0.02 2.10 16 Total: -1.00 -73.58 309.79 4.69 -68.88 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: 1.02 Total: 9.05 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: 6.19 Total: 10.77 kcal Atomic # 7 Polarization: -104.95 SS G_CDS: -4.22 Total: -109.17 kcal Atomic # 8 Polarization: -25.93 SS G_CDS: -0.01 Total: -25.94 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 1.72 Total: 46.40 kcal Total: -73.58 4.69 -68.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971038794.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.779 kcal (2) G-P(sol) polarization free energy of solvation -73.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds