Wall clock time and date at job start Tue Mar 31 2020 01:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.40364 * 126.64708 * 2 1 4 4 C 1.35131 * 107.11813 * 179.97438 * 3 2 1 5 5 O 1.33933 * 108.76699 * 359.77057 * 4 3 2 6 6 C 1.34911 * 109.38073 * 0.37853 * 5 4 3 7 7 C 1.46668 * 125.98806 * 179.88506 * 6 5 4 8 8 O 1.21694 * 120.00090 * 179.69243 * 7 6 5 9 9 N 1.34773 * 119.99362 * 359.41294 * 7 6 5 10 10 C 1.47429 * 125.65296 * 0.30259 * 9 7 6 11 11 C 1.54909 * 104.83261 * 204.08988 * 10 9 7 12 12 C 1.55159 * 101.58032 * 322.98792 * 11 10 9 13 13 H 1.08998 * 110.72410 * 276.96013 * 12 11 10 14 14 N 1.46509 * 110.71731 * 153.86544 * 12 11 10 15 15 C 1.46494 * 119.99915 * 299.99763 * 14 12 11 16 16 C 1.36932 * 119.99660 * 120.00411 * 14 12 11 17 17 H 1.07996 * 120.00743 * 23.59529 * 16 14 12 18 18 C 1.38821 * 119.99888 * 203.60016 * 16 14 12 19 19 N 1.31621 * 119.99847 * 15.66418 * 18 16 14 20 20 Si 1.86798 * 120.00277 * 195.67188 * 18 16 14 21 21 H 1.48503 * 109.46799 * 59.99464 * 20 18 16 22 22 H 1.48496 * 109.47052 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.46940 * 299.99809 * 20 18 16 24 24 C 1.47028 * 125.64579 * 179.97438 * 9 7 6 25 25 H 1.08997 * 109.47479 * 270.02077 * 1 2 3 26 26 H 1.09004 * 109.47493 * 30.03138 * 1 2 3 27 27 H 1.09008 * 109.46963 * 150.02563 * 1 2 3 28 28 H 1.08001 * 126.44202 * 359.97438 * 3 2 1 29 29 H 1.07999 * 125.62048 * 179.97438 * 4 3 2 30 30 H 1.09000 * 110.36147 * 322.92745 * 10 9 7 31 31 H 1.08996 * 110.36707 * 85.14266 * 10 9 7 32 32 H 1.08994 * 111.00562 * 81.06198 * 11 10 9 33 33 H 1.08994 * 111.00566 * 204.87816 * 11 10 9 34 34 H 1.09004 * 109.46811 * 95.23442 * 15 14 12 35 35 H 1.08997 * 109.47627 * 215.22709 * 15 14 12 36 36 H 1.08992 * 109.47716 * 335.23614 * 15 14 12 37 37 H 0.96994 * 119.99937 * 179.97438 * 19 18 16 38 38 H 1.09003 * 109.88349 * 298.40013 * 24 9 7 39 39 H 1.09001 * 109.87733 * 59.56001 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3447 1.1262 0.0000 4 6 3.6183 0.6745 0.0006 5 8 3.6005 -0.6647 0.0060 6 6 2.3220 -1.0955 0.0006 7 6 1.8842 -2.4953 0.0015 8 8 0.6967 -2.7614 0.0019 9 7 2.7971 -3.4868 -0.0037 10 6 4.2604 -3.3075 -0.0042 11 6 4.8197 -4.6135 -0.6217 12 6 3.8481 -5.6741 -0.0399 13 1 4.1532 -5.9667 0.9648 14 7 3.7722 -6.8444 -0.9180 15 6 3.3132 -6.6938 -2.3010 16 6 4.1300 -8.0789 -0.4458 17 1 4.0992 -8.2814 0.6145 18 6 4.5326 -9.0703 -1.3302 19 7 4.8677 -8.7556 -2.5635 20 14 4.5987 -10.8511 -0.7701 21 1 3.2458 -11.2843 -0.3371 22 1 5.0559 -11.7070 -1.8942 23 1 5.5463 -10.9777 0.3663 24 6 2.4985 -4.9264 -0.0029 25 1 -0.3634 0.0004 1.0276 26 1 -0.3634 0.8897 -0.5143 27 1 -0.3633 -0.8903 -0.5135 28 1 2.0306 2.1595 -0.0004 29 1 4.5046 1.2916 0.0003 30 1 4.5372 -2.4494 -0.6167 31 1 4.6274 -3.1800 1.0142 32 1 4.7628 -4.5868 -1.7098 33 1 5.8419 -4.7958 -0.2904 34 1 4.1748 -6.5845 -2.9598 35 1 2.7426 -7.5756 -2.5926 36 1 2.6811 -5.8095 -2.3799 37 1 5.1494 -9.4482 -3.1814 38 1 1.9505 -5.1909 0.9015 39 1 1.9102 -5.1834 -0.8838 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971083494.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:05:52 Heat of formation + Delta-G solvation = -6.698042 kcal Electronic energy + Delta-G solvation = -21893.935796 eV Core-core repulsion = 18610.601095 eV Total energy + Delta-G solvation = -3283.334702 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.67005 -40.93935 -38.97504 -36.63808 -35.05084 -33.52297 -31.73009 -31.16295 -29.60267 -28.42700 -28.06445 -25.57012 -24.10231 -23.02866 -22.15642 -20.85652 -20.39417 -18.95973 -18.62285 -17.76558 -17.34928 -17.06994 -16.55431 -16.25907 -15.58391 -15.26937 -14.98285 -14.51606 -14.46258 -14.22484 -14.02615 -13.90049 -13.84119 -13.47981 -13.21432 -12.94870 -12.88611 -12.76057 -12.55344 -12.39248 -12.29357 -12.09346 -11.83632 -11.52301 -11.24764 -10.65182 -10.63575 -9.92185 -9.46617 -8.82292 -7.84689 -5.34028 0.03706 1.43408 1.47990 1.51479 1.57063 1.60846 2.05740 2.10362 2.51725 3.27554 3.50406 3.52336 3.80480 3.82542 3.92291 4.02869 4.24751 4.28890 4.39901 4.53040 4.60947 4.64086 4.70298 4.75755 4.79885 4.90039 4.94767 5.09050 5.12912 5.19629 5.23423 5.27628 5.34697 5.50112 5.63100 5.65887 5.93583 6.30187 6.38000 6.90139 7.11548 7.81453 8.27504 9.18716 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.040154 B = 0.003813 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.140528 B = 7340.739050 C = 7654.608597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.094 4.094 3 C -0.233 4.233 4 C 0.012 3.988 5 O -0.167 6.167 6 C -0.114 4.114 7 C 0.604 3.396 8 O -0.562 6.562 9 N -0.607 5.607 10 C 0.111 3.889 11 C -0.140 4.140 12 C 0.167 3.833 13 H 0.086 0.914 14 N -0.600 5.600 15 C 0.177 3.823 16 C -0.272 4.272 17 H 0.075 0.925 18 C -0.046 4.046 19 N -0.934 5.934 20 Si 0.969 3.031 21 H -0.282 1.282 22 H -0.296 1.296 23 H -0.272 1.272 24 C 0.099 3.901 25 H 0.077 0.923 26 H 0.092 0.908 27 H 0.059 0.941 28 H 0.185 0.815 29 H 0.257 0.743 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.056 0.944 33 H 0.090 0.910 34 H 0.012 0.988 35 H 0.012 0.988 36 H 0.023 0.977 37 H 0.249 0.751 38 H 0.064 0.936 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.848 21.344 5.986 22.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.097 4.097 3 C -0.252 4.252 4 C -0.057 4.057 5 O -0.063 6.063 6 C -0.165 4.165 7 C 0.395 3.605 8 O -0.444 6.444 9 N -0.338 5.338 10 C -0.010 4.010 11 C -0.180 4.180 12 C 0.058 3.942 13 H 0.105 0.895 14 N -0.321 5.321 15 C 0.032 3.968 16 C -0.402 4.402 17 H 0.093 0.907 18 C -0.242 4.242 19 N -0.579 5.579 20 Si 0.797 3.203 21 H -0.208 1.208 22 H -0.222 1.222 23 H -0.197 1.197 24 C -0.026 4.026 25 H 0.096 0.904 26 H 0.110 0.890 27 H 0.078 0.922 28 H 0.202 0.798 29 H 0.273 0.727 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.075 0.925 33 H 0.109 0.891 34 H 0.030 0.970 35 H 0.031 0.969 36 H 0.041 0.959 37 H 0.058 0.942 38 H 0.082 0.918 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.215 20.885 5.846 21.721 hybrid contribution -0.104 -1.213 -0.192 1.233 sum -1.318 19.671 5.654 20.510 Atomic orbital electron populations 1.20421 0.88124 1.03452 1.03065 1.21012 0.98206 0.91728 0.98786 1.22075 0.92156 1.00570 1.10392 1.25419 1.01481 0.79872 0.98949 1.84173 1.27184 1.24071 1.70850 1.21433 0.82810 0.93563 1.18704 1.16593 0.84556 0.82451 0.76921 1.90798 1.16697 1.83078 1.53844 1.48431 1.08254 1.06104 1.71024 1.22511 0.77562 0.98658 1.02313 1.23228 1.00488 0.93930 1.00366 1.21475 0.91252 0.86442 0.94993 0.89543 1.44001 1.75276 1.03596 1.09263 1.20469 0.95428 0.95701 0.85197 1.19529 1.38709 0.88766 0.93157 0.90686 1.25764 0.99255 1.02554 0.96648 1.70221 1.48691 1.32618 1.06382 0.85326 0.77948 0.80035 0.77024 1.20797 1.22176 1.19700 1.22470 0.99891 0.79034 1.01173 0.90441 0.88969 0.92179 0.79780 0.72742 0.88976 0.89227 0.92493 0.89116 0.96992 0.96913 0.95867 0.94190 0.91771 0.92849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.09 9.81 71.23 0.70 -1.39 16 2 C -0.09 -2.24 6.20 -19.74 -0.12 -2.37 16 3 C -0.23 -3.67 10.83 22.07 0.24 -3.43 16 4 C 0.01 0.17 12.08 67.10 0.81 0.98 16 5 O -0.17 -3.70 7.86 -5.03 -0.04 -3.74 16 6 C -0.11 -3.21 6.93 24.08 0.17 -3.04 16 7 C 0.60 21.08 7.82 86.44 0.68 21.76 16 8 O -0.56 -22.71 15.06 -4.33 -0.07 -22.78 16 9 N -0.61 -20.49 3.33 -816.46 -2.72 -23.21 16 10 C 0.11 3.10 6.17 86.85 0.54 3.63 16 11 C -0.14 -4.71 6.66 31.99 0.21 -4.50 16 12 C 0.17 6.61 3.43 46.18 0.16 6.77 16 13 H 0.09 3.30 7.93 -2.39 -0.02 3.28 16 14 N -0.60 -29.75 2.93 -696.14 -2.04 -31.79 16 15 C 0.18 8.92 7.77 127.77 0.99 9.91 16 16 C -0.27 -14.68 9.59 84.04 0.81 -13.87 16 17 H 0.08 3.88 7.85 -2.91 -0.02 3.86 16 18 C -0.05 -2.56 5.05 84.86 0.43 -2.14 16 19 N -0.93 -54.74 10.90 21.65 0.24 -54.50 16 20 Si 0.97 44.58 29.58 68.60 2.03 46.61 16 21 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 22 H -0.30 -13.73 7.11 99.48 0.71 -13.03 16 23 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 24 C 0.10 3.75 6.41 86.73 0.56 4.31 16 25 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 27 H 0.06 1.68 6.45 -2.38 -0.02 1.67 16 28 H 0.18 1.66 8.06 -2.91 -0.02 1.64 16 29 H 0.26 0.74 8.06 -2.91 -0.02 0.71 16 30 H 0.09 2.32 6.22 -2.39 -0.01 2.31 16 31 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.06 2.14 7.34 -2.39 -0.02 2.13 16 33 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 34 H 0.01 0.65 7.32 -2.38 -0.02 0.63 16 35 H 0.01 0.67 7.46 -2.39 -0.02 0.65 16 36 H 0.02 1.05 6.19 -2.39 -0.01 1.04 16 37 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 38 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 39 H 0.05 2.27 6.03 -2.39 -0.01 2.25 16 Total: -1.00 -69.67 317.62 4.62 -65.06 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: 1.05 Total: 7.73 kcal Atomic # 6 Polarization: 10.47 SS G_CDS: 6.16 Total: 16.62 kcal Atomic # 7 Polarization: -104.98 SS G_CDS: -4.52 Total: -109.50 kcal Atomic # 8 Polarization: -26.41 SS G_CDS: -0.10 Total: -26.52 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -69.67 4.62 -65.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971083494.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.357 kcal (2) G-P(sol) polarization free energy of solvation -69.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds