Wall clock time and date at job start Tue Mar 31 2020 00:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34182 * 125.44177 * 2 1 4 4 C 1.47016 * 105.95528 * 180.12862 * 3 2 1 5 5 C 1.47380 * 127.18876 * 179.89422 * 4 3 2 6 6 O 1.21612 * 120.00368 * 5.20567 * 5 4 3 7 7 N 1.34776 * 119.99801 * 185.20698 * 5 4 3 8 8 C 1.47430 * 125.64722 * 175.10874 * 7 5 4 9 9 C 1.54907 * 104.83384 * 155.91733 * 8 7 5 10 10 C 1.55162 * 101.58162 * 37.00377 * 9 8 7 11 11 H 1.08994 * 110.71748 * 83.04286 * 10 9 8 12 12 N 1.46501 * 110.71936 * 206.13843 * 10 9 8 13 13 C 1.46499 * 120.00396 * 59.99822 * 12 10 9 14 14 C 1.36937 * 119.99814 * 240.00485 * 12 10 9 15 15 H 1.08007 * 119.99776 * 333.27264 * 14 12 10 16 16 C 1.38811 * 120.00332 * 153.00416 * 14 12 10 17 17 N 1.31619 * 119.99722 * 350.46817 * 16 14 12 18 18 Si 1.86801 * 120.00322 * 170.46682 * 16 14 12 19 19 H 1.48497 * 109.46933 * 90.00081 * 18 16 14 20 20 H 1.48496 * 109.47093 * 209.99879 * 18 16 14 21 21 H 1.48499 * 109.47061 * 330.00085 * 18 16 14 22 22 C 1.47017 * 125.64949 * 355.15607 * 7 5 4 23 23 C 1.36415 * 105.61730 * 359.63107 * 4 3 2 24 24 O 1.33654 * 108.39597 * 0.22674 * 23 4 3 25 25 H 1.08996 * 109.47070 * 180.26599 * 1 2 3 26 26 H 1.08999 * 109.47117 * 300.26167 * 1 2 3 27 27 H 1.08995 * 109.47365 * 60.25989 * 1 2 3 28 28 H 1.08000 * 127.01549 * 0.02562 * 3 2 1 29 29 H 1.08995 * 110.36735 * 37.07480 * 8 7 5 30 30 H 1.08997 * 110.45667 * 274.80026 * 8 7 5 31 31 H 1.09000 * 110.99990 * 278.93276 * 9 8 7 32 32 H 1.08995 * 111.03968 * 155.09358 * 9 8 7 33 33 H 1.08997 * 109.47557 * 272.22464 * 13 12 10 34 34 H 1.09005 * 109.46867 * 32.22071 * 13 12 10 35 35 H 1.08996 * 109.47063 * 152.21718 * 13 12 10 36 36 H 0.96993 * 120.00251 * 179.97438 * 17 16 14 37 37 H 1.08994 * 109.88333 * 61.59797 * 22 7 5 38 38 H 1.09000 * 109.88581 * 300.42951 * 22 7 5 39 39 H 1.08000 * 125.79715 * 180.22594 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2851 1.0932 0.0000 4 6 3.6710 0.6028 -0.0032 5 6 4.9025 1.4124 -0.0065 6 8 4.8346 2.6229 0.0887 7 7 6.1038 0.8113 -0.1151 8 6 7.4018 1.5004 -0.2337 9 6 8.4427 0.4777 0.2862 10 6 7.8607 -0.8579 -0.2476 11 1 8.1550 -1.0196 -1.2845 12 7 8.2866 -1.9809 0.5912 13 6 7.9350 -2.0078 2.0132 14 6 9.0136 -3.0054 0.0462 15 1 8.9195 -3.2347 -1.0050 16 6 9.8755 -3.7458 0.8436 17 7 10.1380 -3.3514 2.0716 18 14 10.6628 -5.3018 0.1740 19 1 11.9541 -4.9628 -0.4762 20 1 10.9044 -6.2532 1.2882 21 1 9.7558 -5.9262 -0.8223 22 6 6.3370 -0.6401 -0.1360 23 6 3.5790 -0.7583 0.0037 24 8 2.2852 -1.0935 0.0054 25 1 -0.3633 -1.0276 0.0048 26 1 -0.3633 0.5179 0.8876 27 1 -0.3634 0.5098 -0.8922 28 1 1.9595 2.1230 0.0004 29 1 7.4120 2.3990 0.3831 30 1 7.6053 1.7531 -1.2743 31 1 8.4815 0.4793 1.3755 32 1 9.4277 0.6719 -0.1380 33 1 8.6986 -1.4820 2.5863 34 1 6.9713 -1.5196 2.1584 35 1 7.8733 -3.0417 2.3527 36 1 10.7400 -3.8688 2.6289 37 1 5.8352 -1.0838 -0.9958 38 1 5.9650 -1.0886 0.7852 39 1 4.4103 -1.4476 0.0071 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971405343.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:24:28 Heat of formation + Delta-G solvation = 15.645676 kcal Electronic energy + Delta-G solvation = -21832.990073 eV Core-core repulsion = 18550.624268 eV Total energy + Delta-G solvation = -3282.365805 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.57429 -39.62657 -37.38031 -34.77804 -33.13081 -32.44873 -31.45538 -29.87210 -28.03722 -26.58478 -26.13704 -24.61368 -22.93856 -21.56774 -20.88725 -19.51837 -19.21961 -17.12707 -16.84011 -16.39319 -16.33195 -15.81643 -15.29523 -14.70272 -14.09266 -13.81142 -13.43846 -13.33794 -13.29183 -13.20203 -12.81625 -12.78412 -12.58980 -12.34367 -11.97470 -11.63330 -11.31378 -11.02906 -10.82527 -10.66177 -10.53209 -10.29860 -10.02503 -9.98717 -9.75743 -9.73932 -8.64492 -8.61309 -8.37370 -6.85339 -5.86100 -3.35766 1.41042 2.00005 2.78926 3.18758 3.31555 3.38855 3.39802 3.49744 4.36956 4.50727 4.64343 4.86915 5.05233 5.11082 5.20456 5.22947 5.28553 5.42991 5.44149 5.48417 5.57000 5.70181 5.72631 5.84894 5.92685 5.98258 6.13045 6.29584 6.32689 6.51973 6.59419 6.71434 6.83614 6.99038 7.24029 7.60134 7.70048 7.73805 8.29422 8.36650 9.10824 9.71542 10.22131 11.20177 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.022479 B = 0.004432 C = 0.003898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.314367 B = 6316.679515 C = 7181.498253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.023 4.023 3 C -0.164 4.164 4 C -0.229 4.229 5 C 0.599 3.401 6 O -0.550 6.550 7 N -0.608 5.608 8 C 0.109 3.891 9 C -0.151 4.151 10 C 0.173 3.827 11 H 0.082 0.918 12 N -0.585 5.585 13 C 0.159 3.841 14 C -0.266 4.266 15 H 0.069 0.931 16 C 0.009 3.991 17 N -0.903 5.903 18 Si 0.907 3.093 19 H -0.286 1.286 20 H -0.289 1.289 21 H -0.278 1.278 22 C 0.065 3.935 23 C 0.014 3.986 24 O -0.174 6.174 25 H 0.076 0.924 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.157 0.843 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.024 0.976 34 H -0.002 1.002 35 H 0.054 0.946 36 H 0.255 0.745 37 H 0.066 0.934 38 H 0.078 0.922 39 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.163 5.277 -4.091 15.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.071 4.071 3 C -0.184 4.184 4 C -0.233 4.233 5 C 0.389 3.611 6 O -0.429 6.429 7 N -0.341 5.341 8 C -0.014 4.014 9 C -0.191 4.191 10 C 0.063 3.937 11 H 0.100 0.900 12 N -0.306 5.306 13 C 0.014 3.986 14 C -0.395 4.395 15 H 0.087 0.913 16 C -0.190 4.190 17 N -0.547 5.547 18 Si 0.736 3.264 19 H -0.213 1.213 20 H -0.216 1.216 21 H -0.204 1.204 22 C -0.060 4.060 23 C -0.056 4.056 24 O -0.070 6.070 25 H 0.095 0.905 26 H 0.103 0.897 27 H 0.103 0.897 28 H 0.174 0.826 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.043 0.957 34 H 0.016 0.984 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.084 0.916 38 H 0.096 0.904 39 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -14.270 5.542 -3.874 15.791 hybrid contribution 0.780 -0.686 -0.194 1.057 sum -13.490 4.856 -4.067 14.903 Atomic orbital electron populations 1.20299 0.84853 1.04049 1.03617 1.22303 0.94145 0.83858 1.06825 1.22419 0.89988 0.99559 1.06400 1.21437 0.94447 0.93306 1.14128 1.16887 0.81299 0.86485 0.76411 1.90743 1.86716 1.13911 1.51577 1.48294 1.05857 1.08261 1.71675 1.22256 0.81884 0.96480 1.00769 1.23392 0.97705 0.95895 1.02143 1.21315 0.88673 0.87649 0.96103 0.90008 1.43859 1.61563 1.19380 1.05794 1.20801 0.93485 1.00287 0.84004 1.19194 1.17804 1.07553 0.94950 0.91276 1.25128 0.97162 1.00007 0.96725 1.70039 1.37611 1.38850 1.08160 0.86241 0.79419 0.82786 0.77951 1.21290 1.21555 1.20387 1.23118 1.01830 0.79788 1.01260 1.25483 0.84029 0.96265 0.99774 1.83772 1.16717 1.35419 1.71068 0.90468 0.89660 0.89689 0.82566 0.90927 0.91682 0.90609 0.90216 0.95731 0.98387 0.92760 0.93525 0.91605 0.90379 0.75989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.52 10.40 36.00 0.37 -0.14 16 2 C -0.02 -0.27 7.28 -35.74 -0.26 -0.53 16 3 C -0.16 -2.22 10.90 -37.45 -0.41 -2.63 16 4 C -0.23 -3.54 6.28 -103.28 -0.65 -4.19 16 5 C 0.60 10.61 7.84 -12.54 -0.10 10.51 16 6 O -0.55 -11.24 17.22 5.27 0.09 -11.15 16 7 N -0.61 -10.07 3.33 -171.81 -0.57 -10.64 16 8 C 0.11 1.71 6.93 -2.53 -0.02 1.69 16 9 C -0.15 -2.60 6.66 -24.58 -0.16 -2.76 16 10 C 0.17 3.21 3.45 -66.09 -0.23 2.98 16 11 H 0.08 1.49 7.94 -51.93 -0.41 1.08 16 12 N -0.59 -13.40 2.92 -171.39 -0.50 -13.90 16 13 C 0.16 3.63 7.89 59.85 0.47 4.10 16 14 C -0.27 -6.77 9.57 -15.06 -0.14 -6.91 16 15 H 0.07 1.71 7.85 -52.48 -0.41 1.30 16 16 C 0.01 0.24 5.11 -17.43 -0.09 0.15 16 17 N -0.90 -25.06 10.82 55.49 0.60 -24.46 16 18 Si 0.91 20.74 29.57 -169.99 -5.03 15.72 16 19 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 22 C 0.06 1.04 4.59 -3.07 -0.01 1.02 16 23 C 0.01 0.19 10.64 30.08 0.32 0.51 16 24 O -0.17 -2.29 10.52 7.64 0.08 -2.21 16 25 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.16 1.93 8.06 -52.49 -0.42 1.51 16 29 H 0.07 1.16 7.99 -51.93 -0.42 0.74 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.08 1.43 7.24 -51.93 -0.38 1.06 16 32 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.02 0.61 7.55 -51.93 -0.39 0.22 16 34 H 0.00 -0.04 6.06 -51.93 -0.31 -0.36 16 35 H 0.05 1.35 7.03 -51.93 -0.36 0.99 16 36 H 0.25 6.89 8.31 -40.82 -0.34 6.56 16 37 H 0.07 0.94 6.93 -51.93 -0.36 0.58 16 38 H 0.08 1.29 4.78 -51.93 -0.25 1.04 16 39 H 0.22 2.77 4.49 -52.49 -0.24 2.54 16 LS Contribution 318.17 15.07 4.79 4.79 Total: -1.00 -30.84 318.17 -6.64 -37.48 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -5.20 Total: 0.54 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: -0.90 Total: 3.82 kcal Atomic # 7 Polarization: -48.52 SS G_CDS: -0.47 Total: -48.99 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: 0.17 Total: -13.36 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.03 Total: 15.72 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.84 -6.64 -37.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971405343.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.124 kcal (2) G-P(sol) polarization free energy of solvation -30.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds