Wall clock time and date at job start Tue Mar 31 2020 00:24:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34182 * 125.44177 * 2 1 4 4 C 1.47016 * 105.95528 * 180.12862 * 3 2 1 5 5 C 1.47380 * 127.18876 * 179.89422 * 4 3 2 6 6 O 1.21612 * 120.00368 * 5.20567 * 5 4 3 7 7 N 1.34776 * 119.99801 * 185.20698 * 5 4 3 8 8 C 1.47430 * 125.64722 * 175.10874 * 7 5 4 9 9 C 1.54907 * 104.83384 * 155.91733 * 8 7 5 10 10 C 1.55162 * 101.58162 * 37.00377 * 9 8 7 11 11 H 1.08994 * 110.71748 * 83.04286 * 10 9 8 12 12 N 1.46501 * 110.71936 * 206.13843 * 10 9 8 13 13 C 1.46499 * 120.00396 * 59.99822 * 12 10 9 14 14 C 1.36937 * 119.99814 * 240.00485 * 12 10 9 15 15 H 1.08007 * 119.99776 * 333.27264 * 14 12 10 16 16 C 1.38811 * 120.00332 * 153.00416 * 14 12 10 17 17 N 1.31619 * 119.99722 * 350.46817 * 16 14 12 18 18 Si 1.86801 * 120.00322 * 170.46682 * 16 14 12 19 19 H 1.48497 * 109.46933 * 90.00081 * 18 16 14 20 20 H 1.48496 * 109.47093 * 209.99879 * 18 16 14 21 21 H 1.48499 * 109.47061 * 330.00085 * 18 16 14 22 22 C 1.47017 * 125.64949 * 355.15607 * 7 5 4 23 23 C 1.36415 * 105.61730 * 359.63107 * 4 3 2 24 24 O 1.33654 * 108.39597 * 0.22674 * 23 4 3 25 25 H 1.08996 * 109.47070 * 180.26599 * 1 2 3 26 26 H 1.08999 * 109.47117 * 300.26167 * 1 2 3 27 27 H 1.08995 * 109.47365 * 60.25989 * 1 2 3 28 28 H 1.08000 * 127.01549 * 0.02562 * 3 2 1 29 29 H 1.08995 * 110.36735 * 37.07480 * 8 7 5 30 30 H 1.08997 * 110.45667 * 274.80026 * 8 7 5 31 31 H 1.09000 * 110.99990 * 278.93276 * 9 8 7 32 32 H 1.08995 * 111.03968 * 155.09358 * 9 8 7 33 33 H 1.08997 * 109.47557 * 272.22464 * 13 12 10 34 34 H 1.09005 * 109.46867 * 32.22071 * 13 12 10 35 35 H 1.08996 * 109.47063 * 152.21718 * 13 12 10 36 36 H 0.96993 * 120.00251 * 179.97438 * 17 16 14 37 37 H 1.08994 * 109.88333 * 61.59797 * 22 7 5 38 38 H 1.09000 * 109.88581 * 300.42951 * 22 7 5 39 39 H 1.08000 * 125.79715 * 180.22594 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2851 1.0932 0.0000 4 6 3.6710 0.6028 -0.0032 5 6 4.9025 1.4124 -0.0065 6 8 4.8346 2.6229 0.0887 7 7 6.1038 0.8113 -0.1151 8 6 7.4018 1.5004 -0.2337 9 6 8.4427 0.4777 0.2862 10 6 7.8607 -0.8579 -0.2476 11 1 8.1550 -1.0196 -1.2845 12 7 8.2866 -1.9809 0.5912 13 6 7.9350 -2.0078 2.0132 14 6 9.0136 -3.0054 0.0462 15 1 8.9195 -3.2347 -1.0050 16 6 9.8755 -3.7458 0.8436 17 7 10.1380 -3.3514 2.0716 18 14 10.6628 -5.3018 0.1740 19 1 11.9541 -4.9628 -0.4762 20 1 10.9044 -6.2532 1.2882 21 1 9.7558 -5.9262 -0.8223 22 6 6.3370 -0.6401 -0.1360 23 6 3.5790 -0.7583 0.0037 24 8 2.2852 -1.0935 0.0054 25 1 -0.3633 -1.0276 0.0048 26 1 -0.3633 0.5179 0.8876 27 1 -0.3634 0.5098 -0.8922 28 1 1.9595 2.1230 0.0004 29 1 7.4120 2.3990 0.3831 30 1 7.6053 1.7531 -1.2743 31 1 8.4815 0.4793 1.3755 32 1 9.4277 0.6719 -0.1380 33 1 8.6986 -1.4820 2.5863 34 1 6.9713 -1.5196 2.1584 35 1 7.8733 -3.0417 2.3527 36 1 10.7400 -3.8688 2.6289 37 1 5.8352 -1.0838 -0.9958 38 1 5.9650 -1.0886 0.7852 39 1 4.4103 -1.4476 0.0071 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971405343.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:24:27 Heat of formation + Delta-G solvation = -2.994652 kcal Electronic energy + Delta-G solvation = -21833.798379 eV Core-core repulsion = 18550.624268 eV Total energy + Delta-G solvation = -3283.174110 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.60159 -41.00537 -38.88621 -36.49669 -34.17316 -33.60613 -33.04188 -31.25981 -29.48828 -28.04551 -27.46642 -26.01814 -24.56767 -22.83667 -21.95097 -21.04702 -20.46295 -18.91430 -17.99035 -17.64792 -17.54029 -17.19225 -16.66905 -16.29353 -15.63862 -15.22040 -14.99380 -14.50239 -14.47387 -14.23954 -13.99876 -13.91300 -13.76773 -13.69183 -13.23473 -12.92730 -12.84921 -12.67288 -12.53422 -12.34250 -12.22599 -12.02298 -11.83911 -11.55455 -11.20249 -10.86794 -10.60406 -9.73525 -9.57576 -8.74878 -7.83922 -5.34759 0.27976 1.00195 1.50928 1.52578 1.60847 1.73252 1.99699 2.21725 2.52590 3.32180 3.32623 3.61923 3.64406 3.77486 3.85900 3.97574 4.25879 4.26722 4.34302 4.40866 4.49479 4.58450 4.74062 4.75793 4.76530 4.85524 4.90798 4.93620 5.03997 5.13595 5.24739 5.32554 5.37146 5.41371 5.67258 5.72104 5.99198 6.33232 6.41101 7.01269 7.15790 7.84005 8.30486 9.21129 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.022479 B = 0.004432 C = 0.003898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.314367 B = 6316.679515 C = 7181.498253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.008 4.008 3 C -0.189 4.189 4 C -0.255 4.255 5 C 0.596 3.404 6 O -0.585 6.585 7 N -0.608 5.608 8 C 0.114 3.886 9 C -0.142 4.142 10 C 0.167 3.833 11 H 0.090 0.910 12 N -0.598 5.598 13 C 0.176 3.824 14 C -0.266 4.266 15 H 0.078 0.922 16 C -0.045 4.045 17 N -0.937 5.937 18 Si 0.967 3.033 19 H -0.287 1.287 20 H -0.298 1.298 21 H -0.266 1.266 22 C 0.077 3.923 23 C 0.023 3.977 24 O -0.177 6.177 25 H 0.089 0.911 26 H 0.102 0.898 27 H 0.104 0.896 28 H 0.161 0.839 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.055 0.945 32 H 0.084 0.916 33 H -0.004 1.004 34 H 0.026 0.974 35 H 0.027 0.973 36 H 0.248 0.752 37 H 0.090 0.910 38 H 0.075 0.925 39 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.898 4.843 -5.522 17.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.057 4.057 3 C -0.209 4.209 4 C -0.260 4.260 5 C 0.388 3.612 6 O -0.467 6.467 7 N -0.340 5.340 8 C -0.008 4.008 9 C -0.182 4.182 10 C 0.058 3.942 11 H 0.108 0.892 12 N -0.319 5.319 13 C 0.031 3.969 14 C -0.396 4.396 15 H 0.096 0.904 16 C -0.241 4.241 17 N -0.583 5.583 18 Si 0.796 3.204 19 H -0.214 1.214 20 H -0.225 1.225 21 H -0.191 1.191 22 C -0.047 4.047 23 C -0.047 4.047 24 O -0.072 6.072 25 H 0.108 0.892 26 H 0.120 0.880 27 H 0.122 0.878 28 H 0.179 0.821 29 H 0.088 0.912 30 H 0.103 0.897 31 H 0.073 0.927 32 H 0.103 0.897 33 H 0.014 0.986 34 H 0.044 0.956 35 H 0.046 0.954 36 H 0.057 0.943 37 H 0.108 0.892 38 H 0.093 0.907 39 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -16.025 5.112 -5.339 17.648 hybrid contribution 1.246 -0.504 0.225 1.362 sum -14.779 4.609 -5.114 16.304 Atomic orbital electron populations 1.20553 0.81469 1.05436 1.05342 1.23076 0.95796 0.82740 1.04050 1.22592 0.89514 1.00550 1.08232 1.21450 0.94389 0.94047 1.16094 1.17210 0.81999 0.86278 0.75689 1.90715 1.87213 1.15399 1.53414 1.48330 1.05931 1.08455 1.71275 1.22250 0.81055 0.95731 1.01805 1.23231 0.98478 0.95724 1.00785 1.21488 0.90241 0.86725 0.95743 0.89191 1.43988 1.61572 1.20443 1.05918 1.20490 0.93883 0.98421 0.84078 1.19576 1.16926 1.07835 0.95276 0.90391 1.25839 0.98296 1.02896 0.97078 1.70203 1.38713 1.39973 1.09375 0.85278 0.78533 0.79490 0.77130 1.21380 1.22478 1.19107 1.22952 0.99888 0.79601 1.02236 1.25545 0.84651 0.95628 0.98868 1.83804 1.16569 1.36045 1.70828 0.89232 0.87973 0.87778 0.82093 0.91241 0.89656 0.92668 0.89719 0.98587 0.95625 0.95366 0.94292 0.89168 0.90673 0.75063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.79 10.40 71.23 0.74 -0.05 16 2 C -0.01 -0.17 7.28 24.76 0.18 0.01 16 3 C -0.19 -4.87 10.90 23.65 0.26 -4.61 16 4 C -0.26 -7.61 6.28 -18.99 -0.12 -7.73 16 5 C 0.60 20.67 7.84 86.65 0.68 21.35 16 6 O -0.58 -23.85 17.22 -4.07 -0.07 -23.92 16 7 N -0.61 -19.30 3.33 -815.73 -2.71 -22.01 16 8 C 0.11 3.44 6.93 86.85 0.60 4.04 16 9 C -0.14 -4.77 6.66 31.99 0.21 -4.56 16 10 C 0.17 5.93 3.45 46.18 0.16 6.09 16 11 H 0.09 3.08 7.94 -2.39 -0.02 3.06 16 12 N -0.60 -27.01 2.92 -696.14 -2.04 -29.05 16 13 C 0.18 8.14 7.89 127.77 1.01 9.15 16 14 C -0.27 -13.35 9.57 84.03 0.80 -12.55 16 15 H 0.08 3.71 7.85 -2.91 -0.02 3.69 16 16 C -0.05 -2.39 5.11 84.86 0.43 -1.96 16 17 N -0.94 -53.01 10.82 21.65 0.23 -52.78 16 18 Si 0.97 42.58 29.57 68.60 2.03 44.61 16 19 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 20 H -0.30 -13.43 7.11 99.48 0.71 -12.72 16 21 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 22 C 0.08 2.32 4.59 86.73 0.40 2.72 16 23 C 0.02 0.59 10.64 67.39 0.72 1.30 16 24 O -0.18 -4.24 10.52 4.43 0.05 -4.19 16 25 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.16 3.85 8.06 -2.91 -0.02 3.82 16 29 H 0.07 2.17 7.99 -2.39 -0.02 2.15 16 30 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.05 2.09 7.24 -2.39 -0.02 2.08 16 32 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 33 H 0.00 -0.22 7.55 -2.39 -0.02 -0.24 16 34 H 0.03 1.02 6.06 -2.38 -0.01 1.00 16 35 H 0.03 1.42 7.03 -2.39 -0.02 1.40 16 36 H 0.25 13.77 8.31 -92.71 -0.77 13.00 16 37 H 0.09 2.32 6.93 -2.39 -0.02 2.30 16 38 H 0.08 2.34 4.78 -2.39 -0.01 2.33 16 39 H 0.23 5.25 4.49 -2.91 -0.01 5.24 16 Total: -1.00 -66.48 318.17 4.62 -61.85 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: 1.06 Total: 12.27 kcal Atomic # 6 Polarization: 7.14 SS G_CDS: 6.07 Total: 13.21 kcal Atomic # 7 Polarization: -99.32 SS G_CDS: -4.52 Total: -103.83 kcal Atomic # 8 Polarization: -28.09 SS G_CDS: -0.02 Total: -28.11 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Total: -66.48 4.62 -61.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971405343.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.859 kcal (2) G-P(sol) polarization free energy of solvation -66.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds