Wall clock time and date at job start Tue Mar 31 2020 00:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34177 * 125.43516 * 2 1 4 4 C 1.47022 * 105.95373 * 179.97438 * 3 2 1 5 5 C 1.47380 * 127.19421 * 179.97438 * 4 3 2 6 6 O 1.21619 * 119.99507 * 5.94515 * 5 4 3 7 7 N 1.34775 * 120.00286 * 185.67599 * 5 4 3 8 8 C 1.47420 * 125.65178 * 175.77212 * 7 5 4 9 9 C 1.54904 * 104.83402 * 204.08667 * 8 7 5 10 10 C 1.55156 * 101.58336 * 322.98881 * 9 8 7 11 11 H 1.09000 * 110.71813 * 276.96293 * 10 9 8 12 12 N 1.46493 * 110.72191 * 153.86562 * 10 9 8 13 13 C 1.46504 * 119.99903 * 299.99656 * 12 10 9 14 14 C 1.36936 * 120.00298 * 120.00210 * 12 10 9 15 15 H 1.08007 * 119.99634 * 24.84713 * 14 12 10 16 16 C 1.38809 * 120.00190 * 204.84818 * 14 12 10 17 17 N 1.31619 * 119.99949 * 5.85766 * 16 14 12 18 18 Si 1.86798 * 120.00000 * 185.85986 * 16 14 12 19 19 H 1.48498 * 109.47201 * 59.99980 * 18 16 14 20 20 H 1.48507 * 109.47086 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47236 * 299.99928 * 18 16 14 22 22 C 1.47021 * 125.64727 * 355.45313 * 7 5 4 23 23 C 1.36418 * 105.61562 * 0.22409 * 4 3 2 24 24 O 1.33654 * 108.39353 * 359.63129 * 23 4 3 25 25 H 1.08998 * 109.46610 * 90.00564 * 1 2 3 26 26 H 1.08999 * 109.47047 * 209.99901 * 1 2 3 27 27 H 1.08997 * 109.47595 * 330.00711 * 1 2 3 28 28 H 1.08001 * 127.02707 * 359.91631 * 3 2 1 29 29 H 1.09000 * 110.36624 * 322.92622 * 8 7 5 30 30 H 1.09007 * 110.36784 * 85.13219 * 8 7 5 31 31 H 1.09002 * 111.00638 * 81.06210 * 9 8 7 32 32 H 1.09004 * 111.00672 * 204.87717 * 9 8 7 33 33 H 1.09009 * 109.46732 * 95.19498 * 13 12 10 34 34 H 1.09001 * 109.47361 * 215.18988 * 13 12 10 35 35 H 1.08994 * 109.47205 * 335.19378 * 13 12 10 36 36 H 0.97006 * 119.99896 * 179.97438 * 17 16 14 37 37 H 1.09003 * 109.88323 * 298.40500 * 22 7 5 38 38 H 1.09006 * 109.87783 * 59.56585 * 22 7 5 39 39 H 1.08002 * 125.79867 * 179.77487 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2849 1.0932 0.0000 4 6 3.6710 0.6029 0.0006 5 6 4.9025 1.4126 0.0003 6 8 4.8349 2.6221 0.1086 7 7 6.1037 0.8123 -0.1144 8 6 7.4026 1.5019 -0.2170 9 6 8.3342 0.4892 -0.9283 10 6 7.8550 -0.8553 -0.3201 11 1 8.3280 -1.0319 0.6459 12 7 8.1249 -1.9648 -1.2379 13 6 7.5269 -1.9712 -2.5753 14 6 8.9360 -2.9961 -0.8456 15 1 9.0530 -3.2218 0.2041 16 6 9.6078 -3.7512 -1.7971 17 7 9.5579 -3.4061 -3.0663 18 14 10.5827 -5.2571 -1.2762 19 1 9.6747 -6.2320 -0.6202 20 1 11.2011 -5.8843 -2.4718 21 1 11.6467 -4.8525 -0.3226 22 6 6.3362 -0.6389 -0.1514 23 6 3.5790 -0.7582 -0.0042 24 8 2.2852 -1.0934 0.0007 25 1 -0.3632 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5137 28 1 1.9595 2.1230 -0.0013 29 1 7.3041 2.4097 -0.8123 30 1 7.7853 1.7397 0.7756 31 1 8.1796 0.5071 -2.0072 32 1 9.3789 0.6797 -0.6823 33 1 8.2343 -1.5529 -3.2915 34 1 7.2842 -2.9950 -2.8600 35 1 6.6176 -1.3704 -2.5696 36 1 10.0278 -3.9336 -3.7311 37 1 5.9962 -1.0927 0.7795 38 1 5.8050 -1.0780 -0.9960 39 1 4.4104 -1.4475 -0.0086 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971405350.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:24:31 Heat of formation + Delta-G solvation = -1.887046 kcal Electronic energy + Delta-G solvation = -21856.256239 eV Core-core repulsion = 18573.130158 eV Total energy + Delta-G solvation = -3283.126081 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -43.60507 -41.00580 -38.88711 -36.50143 -34.17626 -33.60491 -33.03344 -31.24737 -29.48096 -28.05452 -27.46839 -26.01398 -24.55408 -22.83220 -21.95512 -21.04460 -20.46397 -18.93324 -17.97112 -17.67557 -17.52159 -17.21562 -16.66704 -16.33171 -15.59848 -15.19289 -14.95479 -14.52101 -14.44804 -14.27433 -13.99216 -13.91379 -13.77404 -13.68364 -13.21453 -12.96337 -12.75376 -12.66311 -12.53871 -12.34691 -12.22769 -12.05210 -11.82468 -11.54820 -11.21253 -10.87040 -10.60683 -9.74258 -9.58275 -8.77751 -7.80700 -5.32385 0.27778 1.00127 1.52249 1.52925 1.59252 1.72833 1.99222 2.21497 2.53036 3.32859 3.33827 3.61881 3.64472 3.77121 3.84548 3.97267 4.26002 4.27335 4.33284 4.40636 4.50141 4.59282 4.73662 4.74831 4.76574 4.85223 4.89649 4.93242 5.03812 5.14118 5.24467 5.34635 5.39051 5.40882 5.68414 5.77177 5.98771 6.32561 6.40489 7.01073 7.16930 7.85376 8.30285 9.22214 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.022162 B = 0.004479 C = 0.003935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.128604 B = 6250.043840 C = 7113.930413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.009 4.009 3 C -0.189 4.189 4 C -0.256 4.256 5 C 0.597 3.403 6 O -0.584 6.584 7 N -0.608 5.608 8 C 0.115 3.885 9 C -0.141 4.141 10 C 0.167 3.833 11 H 0.090 0.910 12 N -0.600 5.600 13 C 0.179 3.821 14 C -0.265 4.265 15 H 0.080 0.920 16 C -0.047 4.047 17 N -0.939 5.939 18 Si 0.968 3.032 19 H -0.276 1.276 20 H -0.300 1.300 21 H -0.276 1.276 22 C 0.076 3.924 23 C 0.023 3.977 24 O -0.178 6.178 25 H 0.096 0.904 26 H 0.090 0.910 27 H 0.107 0.893 28 H 0.162 0.838 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.056 0.944 32 H 0.086 0.914 33 H 0.003 0.997 34 H 0.020 0.980 35 H 0.025 0.975 36 H 0.247 0.753 37 H 0.090 0.910 38 H 0.075 0.925 39 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.370 5.151 6.865 16.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.057 4.057 3 C -0.208 4.208 4 C -0.260 4.260 5 C 0.388 3.612 6 O -0.467 6.467 7 N -0.340 5.340 8 C -0.008 4.008 9 C -0.181 4.181 10 C 0.059 3.941 11 H 0.108 0.892 12 N -0.321 5.321 13 C 0.035 3.965 14 C -0.395 4.395 15 H 0.097 0.903 16 C -0.242 4.242 17 N -0.585 5.585 18 Si 0.797 3.203 19 H -0.202 1.202 20 H -0.226 1.226 21 H -0.202 1.202 22 C -0.048 4.048 23 C -0.047 4.047 24 O -0.073 6.073 25 H 0.115 0.885 26 H 0.109 0.891 27 H 0.126 0.874 28 H 0.180 0.820 29 H 0.088 0.912 30 H 0.102 0.898 31 H 0.075 0.925 32 H 0.104 0.896 33 H 0.021 0.979 34 H 0.039 0.961 35 H 0.043 0.957 36 H 0.056 0.944 37 H 0.108 0.892 38 H 0.093 0.907 39 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -14.518 5.420 6.778 16.914 hybrid contribution 1.157 -0.546 -0.322 1.319 sum -13.361 4.874 6.455 15.619 Atomic orbital electron populations 1.20553 0.81471 1.05688 1.05073 1.23079 0.95804 0.82754 1.04080 1.22617 0.89515 1.00525 1.08179 1.21463 0.94450 0.94046 1.16081 1.17195 0.81955 0.86248 0.75770 1.90716 1.87215 1.15402 1.53331 1.48335 1.05924 1.08463 1.71259 1.22252 0.81609 0.95708 1.01198 1.23244 0.99476 0.95609 0.99818 1.21466 0.91367 0.86921 0.94386 0.89228 1.43997 1.54594 1.20889 1.12666 1.20506 0.92741 0.97630 0.85656 1.19568 1.19811 1.07284 0.92870 0.90272 1.25822 0.99793 1.02805 0.95782 1.70222 1.46554 1.40734 1.00973 0.85330 0.78822 0.79635 0.76530 1.20237 1.22636 1.20165 1.22991 1.00051 0.79643 1.02090 1.25554 0.84645 0.95646 0.98860 1.83793 1.16581 1.36063 1.70876 0.88510 0.89084 0.87438 0.82047 0.91182 0.89815 0.92529 0.89557 0.97851 0.96103 0.95719 0.94367 0.89234 0.90689 0.75086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.82 10.40 71.24 0.74 -0.07 16 2 C -0.01 -0.19 7.28 24.76 0.18 -0.01 16 3 C -0.19 -4.91 10.90 23.65 0.26 -4.65 16 4 C -0.26 -7.69 6.28 -18.99 -0.12 -7.81 16 5 C 0.60 20.66 7.84 86.65 0.68 21.34 16 6 O -0.58 -23.69 17.28 -4.09 -0.07 -23.76 16 7 N -0.61 -19.25 3.33 -815.69 -2.71 -21.96 16 8 C 0.11 3.43 6.89 86.85 0.60 4.03 16 9 C -0.14 -4.67 6.66 31.98 0.21 -4.46 16 10 C 0.17 5.93 3.43 46.18 0.16 6.09 16 11 H 0.09 3.05 7.94 -2.39 -0.02 3.03 16 12 N -0.60 -27.11 2.94 -696.13 -2.05 -29.15 16 13 C 0.18 8.32 7.72 127.77 0.99 9.31 16 14 C -0.27 -13.33 9.61 84.03 0.81 -12.52 16 15 H 0.08 3.76 7.82 -2.91 -0.02 3.74 16 16 C -0.05 -2.46 5.23 84.86 0.44 -2.02 16 17 N -0.94 -53.06 10.46 21.65 0.23 -52.83 16 18 Si 0.97 42.68 29.56 68.60 2.03 44.71 16 19 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 20 H -0.30 -13.59 7.11 99.48 0.71 -12.88 16 21 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 22 C 0.08 2.30 4.55 86.73 0.40 2.70 16 23 C 0.02 0.59 10.63 67.39 0.72 1.31 16 24 O -0.18 -4.34 10.52 4.49 0.05 -4.29 16 25 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.16 3.88 8.06 -2.91 -0.02 3.86 16 29 H 0.07 2.15 8.08 -2.39 -0.02 2.13 16 30 H 0.08 2.23 8.14 -2.38 -0.02 2.22 16 31 H 0.06 2.10 7.34 -2.39 -0.02 2.08 16 32 H 0.09 2.74 8.14 -2.38 -0.02 2.72 16 33 H 0.00 0.16 7.33 -2.38 -0.02 0.15 16 34 H 0.02 1.04 7.27 -2.39 -0.02 1.02 16 35 H 0.02 0.99 6.18 -2.39 -0.01 0.97 16 36 H 0.25 13.77 8.31 -92.70 -0.77 13.00 16 37 H 0.09 2.31 7.15 -2.39 -0.02 2.29 16 38 H 0.08 2.34 4.67 -2.38 -0.01 2.33 16 39 H 0.23 5.33 4.50 -2.91 -0.01 5.32 16 Total: -1.00 -66.29 318.21 4.59 -61.70 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: 1.06 Total: 12.37 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: 6.06 Total: 13.23 kcal Atomic # 7 Polarization: -99.41 SS G_CDS: -4.53 Total: -103.95 kcal Atomic # 8 Polarization: -28.03 SS G_CDS: -0.02 Total: -28.06 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -66.29 4.59 -61.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971405350.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.811 kcal (2) G-P(sol) polarization free energy of solvation -66.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds