Wall clock time and date at job start Tue Mar 31 2020 00:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.33654 * 125.80131 * 2 1 4 4 C 1.34214 * 110.90586 * 180.26795 * 3 2 1 5 5 C 1.34177 * 109.12666 * 359.75931 * 4 3 2 6 6 C 1.36414 * 125.79796 * 179.85239 * 2 1 3 7 7 C 1.47376 * 127.19306 * 0.02562 * 6 2 1 8 8 O 1.21608 * 120.00303 * 15.61342 * 7 6 2 9 9 N 1.34783 * 119.99612 * 195.61619 * 7 6 2 10 10 C 1.48208 * 119.96625 * 175.33602 * 9 7 6 11 11 C 1.47142 * 110.34280 * 102.47301 * 10 9 7 12 12 C 1.53790 * 111.84275 * 58.29082 * 11 10 9 13 13 N 1.43458 * 107.96499 * 281.67037 * 12 11 10 14 14 C 1.36939 * 118.94188 * 273.61057 * 13 12 11 15 15 H 1.08002 * 119.99634 * 26.48015 * 14 13 12 16 16 C 1.38803 * 119.99978 * 206.47835 * 14 13 12 17 17 N 1.31625 * 120.00416 * 16.29217 * 16 14 13 18 18 Si 1.86800 * 119.99840 * 196.28910 * 16 14 13 19 19 H 1.48502 * 109.47235 * 265.01434 * 18 16 14 20 20 H 1.48501 * 109.47150 * 145.01856 * 18 16 14 21 21 H 1.48494 * 109.47248 * 25.01851 * 18 16 14 22 22 C 1.48864 * 122.11903 * 93.88620 * 13 12 11 23 23 C 1.43622 * 119.97193 * 355.31775 * 9 7 6 24 24 H 1.09000 * 109.47427 * 270.14743 * 1 2 3 25 25 H 1.09005 * 109.46993 * 30.14278 * 1 2 3 26 26 H 1.09001 * 109.47515 * 150.14260 * 1 2 3 27 27 H 1.08000 * 125.43703 * 179.75989 * 4 3 2 28 28 H 1.07993 * 127.02687 * 179.97438 * 5 4 3 29 29 H 1.09002 * 109.33078 * 342.20518 * 10 9 7 30 30 H 1.09000 * 109.18322 * 222.64620 * 10 9 7 31 31 H 1.09003 * 109.00300 * 297.68620 * 11 10 9 32 32 H 1.08997 * 109.00857 * 178.90676 * 11 10 9 33 33 H 1.09001 * 109.76709 * 162.05099 * 12 11 10 34 34 H 1.09010 * 109.80652 * 41.31335 * 12 11 10 35 35 H 0.96995 * 119.99916 * 180.02562 * 17 16 14 36 36 H 1.08995 * 109.48162 * 80.35212 * 22 13 12 37 37 H 1.09003 * 109.47575 * 200.38338 * 22 13 12 38 38 H 1.08999 * 108.87451 * 31.46185 * 23 9 7 39 39 H 1.09001 * 108.87489 * 150.00691 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2888 1.0840 0.0000 4 6 3.5859 0.7390 -0.0059 5 6 3.6849 -0.5991 -0.0046 6 6 2.3049 -1.1064 0.0029 7 6 1.8738 -2.5157 0.0060 8 8 0.7261 -2.8012 -0.2772 9 7 2.7516 -3.4882 0.3228 10 6 2.2935 -4.8939 0.4268 11 6 2.6804 -5.6483 -0.7758 12 6 4.2019 -5.6286 -0.9987 13 7 4.5490 -4.3597 -1.5710 14 6 4.4819 -4.2051 -2.9300 15 1 3.8045 -4.8143 -3.5100 16 6 5.2845 -3.2654 -3.5620 17 7 6.3213 -2.7549 -2.9319 18 14 4.8933 -2.7252 -5.3069 19 1 5.6920 -3.5307 -6.2653 20 1 5.2301 -1.2878 -5.4674 21 1 3.4469 -2.9276 -5.5752 22 6 4.9854 -3.2075 -0.7356 23 6 4.1301 -3.1614 0.5588 24 1 -0.3634 0.0026 1.0276 25 1 -0.3633 0.8887 -0.5161 26 1 -0.3634 -0.8912 -0.5116 27 1 4.4172 1.4284 -0.0108 28 1 4.5927 -1.1840 -0.0086 29 1 1.2086 -4.9130 0.5310 30 1 2.7483 -5.3549 1.3035 31 1 2.1888 -5.2090 -1.6439 32 1 2.3506 -6.6816 -0.6681 33 1 4.4850 -6.4304 -1.6808 34 1 4.7165 -5.7565 -0.0463 35 1 6.8818 -2.0979 -3.3735 36 1 6.0375 -3.3245 -0.4760 37 1 4.8495 -2.2814 -1.2943 38 1 4.1871 -2.1594 0.9839 39 1 4.5433 -3.8719 1.2749 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980679616.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:29 Heat of formation + Delta-G solvation = 31.476145 kcal Electronic energy + Delta-G solvation = -23208.620222 eV Core-core repulsion = 19926.940877 eV Total energy + Delta-G solvation = -3281.679345 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.29791 -39.47019 -36.91075 -34.25731 -33.55275 -32.10543 -31.43470 -30.75163 -27.90913 -26.61214 -25.42149 -23.70090 -23.16505 -21.75713 -20.27853 -19.71872 -18.38289 -17.13439 -16.58896 -16.12146 -15.78091 -15.69889 -14.91724 -14.34430 -14.19875 -13.84004 -13.46325 -13.30208 -12.93979 -12.86813 -12.76661 -12.55208 -12.24565 -12.17524 -11.49547 -11.41773 -11.13785 -10.88348 -10.68168 -10.51460 -10.28909 -10.15129 -9.90596 -9.68037 -9.42987 -9.22812 -8.46835 -8.30339 -7.93002 -6.67103 -5.79617 -3.20603 1.70681 2.42111 3.08960 3.37390 3.44928 3.50046 3.59416 3.80767 4.52009 4.81186 5.06939 5.21956 5.31546 5.41482 5.45640 5.55412 5.61067 5.69462 5.80280 5.87183 5.90364 5.96019 6.04652 6.15052 6.19787 6.36806 6.37997 6.48070 6.55985 6.64246 6.84749 6.96188 7.08126 7.30155 7.38870 7.44198 7.82365 8.04597 8.45666 8.74323 9.21524 9.89429 10.35033 11.28637 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014399 B = 0.008556 C = 0.006684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.074929 B = 3271.958381 C = 4188.392053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.059 3.941 3 O -0.182 6.182 4 C -0.053 4.053 5 C -0.190 4.190 6 C -0.229 4.229 7 C 0.595 3.405 8 O -0.560 6.560 9 N -0.574 5.574 10 C 0.132 3.868 11 C -0.170 4.170 12 C 0.162 3.838 13 N -0.588 5.588 14 C -0.251 4.251 15 H 0.063 0.937 16 C 0.006 3.994 17 N -0.907 5.907 18 Si 0.896 3.104 19 H -0.288 1.288 20 H -0.289 1.289 21 H -0.280 1.280 22 C 0.156 3.844 23 C 0.056 3.944 24 H 0.081 0.919 25 H 0.074 0.926 26 H 0.110 0.890 27 H 0.205 0.795 28 H 0.184 0.816 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.055 0.945 33 H 0.046 0.954 34 H 0.033 0.967 35 H 0.252 0.748 36 H 0.043 0.957 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.381 3.764 9.814 11.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.006 3.994 3 O -0.078 6.078 4 C -0.118 4.118 5 C -0.208 4.208 6 C -0.233 4.233 7 C 0.385 3.615 8 O -0.441 6.441 9 N -0.304 5.304 10 C 0.010 3.990 11 C -0.211 4.211 12 C 0.034 3.966 13 N -0.309 5.309 14 C -0.380 4.380 15 H 0.081 0.919 16 C -0.192 4.192 17 N -0.552 5.552 18 Si 0.726 3.274 19 H -0.215 1.215 20 H -0.216 1.216 21 H -0.205 1.205 22 C 0.030 3.970 23 C -0.070 4.070 24 H 0.099 0.901 25 H 0.093 0.907 26 H 0.128 0.872 27 H 0.222 0.778 28 H 0.200 0.800 29 H 0.095 0.905 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.051 0.949 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.100 0.900 38 H 0.106 0.894 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.923 3.994 9.638 11.997 hybrid contribution 0.344 0.186 -1.123 1.189 sum -5.579 4.179 8.515 11.004 Atomic orbital electron populations 1.20560 0.84249 1.05129 1.03692 1.22656 0.93863 0.83304 0.99561 1.83697 1.17318 1.35000 1.71823 1.23893 0.83220 0.96674 1.08026 1.23882 0.97984 0.94408 1.04540 1.21168 0.93416 0.93957 1.14773 1.17141 0.84574 0.83792 0.76019 1.90653 1.19512 1.83549 1.50380 1.47102 1.08523 1.06892 1.67910 1.20553 0.99997 0.80374 0.98029 1.21876 1.02026 0.98310 0.98927 1.20293 0.91000 0.89079 0.96238 1.43581 1.78267 1.05927 1.03128 1.19153 1.16351 1.19608 0.82931 0.91923 1.24934 0.95387 1.01266 0.97626 1.70010 1.15492 1.32280 1.37461 0.86372 0.78149 0.77916 0.84990 1.21501 1.21554 1.20499 1.22132 0.93936 0.92690 0.88215 1.22852 0.82023 1.01513 1.00565 0.90068 0.90742 0.87169 0.77809 0.79975 0.90513 0.92133 0.91253 0.92668 0.93593 0.94880 0.93764 0.93959 0.89987 0.89398 0.92313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.07 10.06 36.01 0.36 -0.71 16 2 C 0.06 0.97 7.37 -34.97 -0.26 0.72 16 3 O -0.18 -2.82 10.52 7.65 0.08 -2.74 16 4 C -0.05 -0.77 12.03 29.30 0.35 -0.42 16 5 C -0.19 -3.23 8.05 -37.45 -0.30 -3.53 16 6 C -0.23 -4.27 6.02 -103.27 -0.62 -4.89 16 7 C 0.59 12.13 7.63 -12.54 -0.10 12.04 16 8 O -0.56 -12.27 14.37 5.27 0.08 -12.20 16 9 N -0.57 -10.92 2.46 -177.72 -0.44 -11.36 16 10 C 0.13 2.27 5.67 -5.91 -0.03 2.24 16 11 C -0.17 -3.16 5.64 -29.13 -0.16 -3.32 16 12 C 0.16 3.33 5.63 -5.24 -0.03 3.30 16 13 N -0.59 -14.26 2.53 -171.78 -0.43 -14.70 16 14 C -0.25 -6.88 9.25 -15.06 -0.14 -7.02 16 15 H 0.06 1.75 7.88 -52.49 -0.41 1.33 16 16 C 0.01 0.16 4.89 -17.43 -0.09 0.08 16 17 N -0.91 -25.40 11.10 55.49 0.62 -24.79 16 18 Si 0.90 22.20 29.58 -169.99 -5.03 17.17 16 19 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 20 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 21 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 22 C 0.16 3.47 4.41 -1.56 -0.01 3.46 16 23 C 0.06 1.00 4.73 -4.39 -0.02 0.98 16 24 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.11 1.68 6.31 -51.93 -0.33 1.36 16 27 H 0.21 2.13 8.06 -52.49 -0.42 1.71 16 28 H 0.18 3.15 3.68 -52.49 -0.19 2.96 16 29 H 0.08 1.33 7.18 -51.93 -0.37 0.96 16 30 H 0.06 0.89 8.05 -51.93 -0.42 0.47 16 31 H 0.07 1.54 7.91 -51.93 -0.41 1.13 16 32 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.05 0.96 8.02 -51.93 -0.42 0.55 16 34 H 0.03 0.62 7.59 -51.92 -0.39 0.23 16 35 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 36 H 0.04 0.99 7.99 -51.93 -0.41 0.58 16 37 H 0.08 2.02 4.71 -51.93 -0.24 1.77 16 38 H 0.09 1.44 4.17 -51.93 -0.22 1.22 16 39 H 0.06 0.95 7.72 -51.93 -0.40 0.55 16 LS Contribution 305.25 15.07 4.60 4.60 Total: -1.00 -31.85 305.25 -6.62 -38.47 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -5.05 Total: 2.62 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: -1.04 Total: 2.93 kcal Atomic # 7 Polarization: -50.59 SS G_CDS: -0.26 Total: -50.84 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: 0.16 Total: -14.94 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.03 Total: 17.17 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.85 -6.62 -38.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980679616.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.947 kcal (2) G-P(sol) polarization free energy of solvation -31.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds