Wall clock time and date at job start Tue Mar 31 2020 00:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.33654 * 125.80131 * 2 1 4 4 C 1.34214 * 110.90586 * 180.26795 * 3 2 1 5 5 C 1.34177 * 109.12666 * 359.75931 * 4 3 2 6 6 C 1.36414 * 125.79796 * 179.85239 * 2 1 3 7 7 C 1.47376 * 127.19306 * 0.02562 * 6 2 1 8 8 O 1.21608 * 120.00303 * 15.61342 * 7 6 2 9 9 N 1.34783 * 119.99612 * 195.61619 * 7 6 2 10 10 C 1.48208 * 119.96625 * 175.33602 * 9 7 6 11 11 C 1.47142 * 110.34280 * 102.47301 * 10 9 7 12 12 C 1.53790 * 111.84275 * 58.29082 * 11 10 9 13 13 N 1.43458 * 107.96499 * 281.67037 * 12 11 10 14 14 C 1.36939 * 118.94188 * 273.61057 * 13 12 11 15 15 H 1.08002 * 119.99634 * 26.48015 * 14 13 12 16 16 C 1.38803 * 119.99978 * 206.47835 * 14 13 12 17 17 N 1.31625 * 120.00416 * 16.29217 * 16 14 13 18 18 Si 1.86800 * 119.99840 * 196.28910 * 16 14 13 19 19 H 1.48502 * 109.47235 * 265.01434 * 18 16 14 20 20 H 1.48501 * 109.47150 * 145.01856 * 18 16 14 21 21 H 1.48494 * 109.47248 * 25.01851 * 18 16 14 22 22 C 1.48864 * 122.11903 * 93.88620 * 13 12 11 23 23 C 1.43622 * 119.97193 * 355.31775 * 9 7 6 24 24 H 1.09000 * 109.47427 * 270.14743 * 1 2 3 25 25 H 1.09005 * 109.46993 * 30.14278 * 1 2 3 26 26 H 1.09001 * 109.47515 * 150.14260 * 1 2 3 27 27 H 1.08000 * 125.43703 * 179.75989 * 4 3 2 28 28 H 1.07993 * 127.02687 * 179.97438 * 5 4 3 29 29 H 1.09002 * 109.33078 * 342.20518 * 10 9 7 30 30 H 1.09000 * 109.18322 * 222.64620 * 10 9 7 31 31 H 1.09003 * 109.00300 * 297.68620 * 11 10 9 32 32 H 1.08997 * 109.00857 * 178.90676 * 11 10 9 33 33 H 1.09001 * 109.76709 * 162.05099 * 12 11 10 34 34 H 1.09010 * 109.80652 * 41.31335 * 12 11 10 35 35 H 0.96995 * 119.99916 * 180.02562 * 17 16 14 36 36 H 1.08995 * 109.48162 * 80.35212 * 22 13 12 37 37 H 1.09003 * 109.47575 * 200.38338 * 22 13 12 38 38 H 1.08999 * 108.87451 * 31.46185 * 23 9 7 39 39 H 1.09001 * 108.87489 * 150.00691 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2888 1.0840 0.0000 4 6 3.5859 0.7390 -0.0059 5 6 3.6849 -0.5991 -0.0046 6 6 2.3049 -1.1064 0.0029 7 6 1.8738 -2.5157 0.0060 8 8 0.7261 -2.8012 -0.2772 9 7 2.7516 -3.4882 0.3228 10 6 2.2935 -4.8939 0.4268 11 6 2.6804 -5.6483 -0.7758 12 6 4.2019 -5.6286 -0.9987 13 7 4.5490 -4.3597 -1.5710 14 6 4.4819 -4.2051 -2.9300 15 1 3.8045 -4.8143 -3.5100 16 6 5.2845 -3.2654 -3.5620 17 7 6.3213 -2.7549 -2.9319 18 14 4.8933 -2.7252 -5.3069 19 1 5.6920 -3.5307 -6.2653 20 1 5.2301 -1.2878 -5.4674 21 1 3.4469 -2.9276 -5.5752 22 6 4.9854 -3.2075 -0.7356 23 6 4.1301 -3.1614 0.5588 24 1 -0.3634 0.0026 1.0276 25 1 -0.3633 0.8887 -0.5161 26 1 -0.3634 -0.8912 -0.5116 27 1 4.4172 1.4284 -0.0108 28 1 4.5927 -1.1840 -0.0086 29 1 1.2086 -4.9130 0.5310 30 1 2.7483 -5.3549 1.3035 31 1 2.1888 -5.2090 -1.6439 32 1 2.3506 -6.6816 -0.6681 33 1 4.4850 -6.4304 -1.6808 34 1 4.7165 -5.7565 -0.0463 35 1 6.8818 -2.0979 -3.3735 36 1 6.0375 -3.3245 -0.4760 37 1 4.8495 -2.2814 -1.2943 38 1 4.1871 -2.1594 0.9839 39 1 4.5433 -3.8719 1.2749 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980679616.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:27 Heat of formation + Delta-G solvation = 11.972142 kcal Electronic energy + Delta-G solvation = -23209.465979 eV Core-core repulsion = 19926.940877 eV Total energy + Delta-G solvation = -3282.525102 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -43.54544 -40.97359 -38.56657 -35.98319 -35.03348 -33.53115 -32.87567 -32.40094 -29.54318 -27.98053 -26.99903 -25.51970 -24.63570 -23.09410 -21.78756 -21.34117 -19.73302 -18.80540 -18.16371 -17.53573 -17.23071 -17.11945 -16.67624 -15.98217 -15.76968 -15.46107 -15.11913 -14.72971 -14.38408 -14.16792 -14.00356 -13.91035 -13.83171 -13.71125 -13.13022 -12.98370 -12.70152 -12.64829 -12.46482 -12.15212 -12.10655 -11.80007 -11.70111 -11.44064 -10.91476 -10.68274 -10.44790 -9.65377 -9.36140 -8.63089 -7.87201 -5.29532 0.39225 1.15954 1.37746 1.41092 1.49754 1.88582 2.19462 2.34731 2.48865 3.25623 3.64132 3.66424 3.79670 3.98888 4.10005 4.21875 4.31281 4.35748 4.49247 4.55314 4.62596 4.65050 4.71874 4.76835 4.84879 4.89598 4.98806 5.05416 5.23441 5.25062 5.29550 5.38860 5.49604 5.58933 5.68784 5.82300 6.07605 6.40218 6.55390 7.18034 7.23874 7.95586 8.33572 9.17109 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014399 B = 0.008556 C = 0.006684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.074929 B = 3271.958381 C = 4188.392053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.061 3.939 3 O -0.178 6.178 4 C -0.033 4.033 5 C -0.216 4.216 6 C -0.266 4.266 7 C 0.583 3.417 8 O -0.586 6.586 9 N -0.578 5.578 10 C 0.127 3.873 11 C -0.155 4.155 12 C 0.157 3.843 13 N -0.603 5.603 14 C -0.261 4.261 15 H 0.047 0.953 16 C -0.036 4.036 17 N -0.923 5.923 18 Si 0.945 3.055 19 H -0.283 1.283 20 H -0.287 1.287 21 H -0.287 1.287 22 C 0.164 3.836 23 C 0.067 3.933 24 H 0.104 0.896 25 H 0.099 0.901 26 H 0.088 0.912 27 H 0.247 0.753 28 H 0.176 0.824 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.024 0.976 32 H 0.088 0.912 33 H 0.036 0.964 34 H 0.058 0.942 35 H 0.251 0.749 36 H 0.026 0.974 37 H 0.055 0.945 38 H 0.107 0.893 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.566 4.459 11.140 13.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.008 3.992 3 O -0.074 6.074 4 C -0.098 4.098 5 C -0.234 4.234 6 C -0.270 4.270 7 C 0.375 3.625 8 O -0.470 6.470 9 N -0.307 5.307 10 C 0.007 3.993 11 C -0.196 4.196 12 C 0.030 3.970 13 N -0.325 5.325 14 C -0.392 4.392 15 H 0.065 0.935 16 C -0.232 4.232 17 N -0.569 5.569 18 Si 0.775 3.225 19 H -0.210 1.210 20 H -0.213 1.213 21 H -0.213 1.213 22 C 0.039 3.961 23 C -0.058 4.058 24 H 0.122 0.878 25 H 0.118 0.882 26 H 0.106 0.894 27 H 0.263 0.737 28 H 0.193 0.807 29 H 0.093 0.907 30 H 0.117 0.883 31 H 0.043 0.957 32 H 0.106 0.894 33 H 0.054 0.946 34 H 0.076 0.924 35 H 0.060 0.940 36 H 0.044 0.956 37 H 0.073 0.927 38 H 0.124 0.876 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.103 4.667 10.984 13.405 hybrid contribution 0.394 -0.052 -1.540 1.590 sum -5.709 4.615 9.445 11.962 Atomic orbital electron populations 1.20627 0.82369 1.05212 1.05177 1.23140 0.95064 0.82976 0.97994 1.83739 1.17701 1.34515 1.71416 1.24617 0.83607 0.96528 1.05063 1.23847 0.97167 0.95603 1.06816 1.21287 0.94800 0.93711 1.17210 1.17549 0.84507 0.84873 0.75619 1.90623 1.20546 1.84169 1.51645 1.47260 1.08625 1.07453 1.67357 1.20721 1.00343 0.79589 0.98679 1.21679 0.99900 1.00207 0.97765 1.20459 0.92386 0.87261 0.96882 1.43821 1.78454 1.07819 1.02440 1.19271 1.15703 1.19449 0.84749 0.93485 1.25447 0.95657 1.01735 1.00343 1.70106 1.15922 1.32594 1.38253 0.85602 0.77322 0.77516 0.82085 1.20995 1.21348 1.21296 1.21955 0.93864 0.90878 0.89422 1.22688 0.80981 1.03586 0.98507 0.87809 0.88210 0.89363 0.73731 0.80673 0.90671 0.88350 0.95695 0.89369 0.94596 0.92357 0.94010 0.95623 0.92707 0.87584 0.89674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.97 10.06 71.24 0.72 -1.25 16 2 C 0.06 1.95 7.37 25.26 0.19 2.14 16 3 O -0.18 -5.12 10.52 4.47 0.05 -5.07 16 4 C -0.03 -0.89 12.03 66.89 0.80 -0.09 16 5 C -0.22 -7.16 8.05 23.65 0.19 -6.97 16 6 C -0.27 -9.79 6.02 -18.99 -0.11 -9.91 16 7 C 0.58 23.80 7.63 86.65 0.66 24.46 16 8 O -0.59 -26.05 14.37 -4.06 -0.06 -26.11 16 9 N -0.58 -21.43 2.46 -834.44 -2.05 -23.49 16 10 C 0.13 4.16 5.67 84.23 0.48 4.64 16 11 C -0.15 -5.58 5.64 29.04 0.16 -5.41 16 12 C 0.16 6.32 5.63 87.21 0.49 6.81 16 13 N -0.60 -29.47 2.53 -697.39 -1.76 -31.23 16 14 C -0.26 -14.63 9.25 84.03 0.78 -13.85 16 15 H 0.05 2.72 7.88 -2.91 -0.02 2.70 16 16 C -0.04 -2.00 4.89 84.86 0.42 -1.58 16 17 N -0.92 -52.25 11.10 21.65 0.24 -52.01 16 18 Si 0.95 46.29 29.58 68.60 2.03 48.32 16 19 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 20 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 21 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 22 C 0.16 7.31 4.41 86.68 0.38 7.70 16 23 C 0.07 2.32 4.73 87.67 0.41 2.74 16 24 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 25 H 0.10 1.98 8.14 -2.38 -0.02 1.96 16 26 H 0.09 2.68 6.31 -2.39 -0.02 2.67 16 27 H 0.25 4.23 8.06 -2.91 -0.02 4.21 16 28 H 0.18 6.01 3.68 -2.91 -0.01 6.00 16 29 H 0.07 2.50 7.18 -2.39 -0.02 2.49 16 30 H 0.10 2.50 8.05 -2.39 -0.02 2.48 16 31 H 0.02 1.11 7.91 -2.39 -0.02 1.09 16 32 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 33 H 0.04 1.49 8.02 -2.39 -0.02 1.47 16 34 H 0.06 2.05 7.59 -2.38 -0.02 2.03 16 35 H 0.25 13.78 8.31 -92.71 -0.77 13.00 16 36 H 0.03 1.22 7.99 -2.39 -0.02 1.20 16 37 H 0.05 2.74 4.71 -2.39 -0.01 2.73 16 38 H 0.11 3.35 4.17 -2.39 -0.01 3.34 16 39 H 0.08 2.50 7.72 -2.39 -0.02 2.48 16 Total: -1.00 -70.28 305.25 5.08 -65.20 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: 1.07 Total: 14.97 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: 5.57 Total: 9.42 kcal Atomic # 7 Polarization: -103.16 SS G_CDS: -3.57 Total: -106.73 kcal Atomic # 8 Polarization: -31.16 SS G_CDS: -0.01 Total: -31.18 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Total: -70.28 5.08 -65.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980679616.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.174 kcal (2) G-P(sol) polarization free energy of solvation -70.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds