Wall clock time and date at job start Tue Mar 31 2020 01:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.40376 * 126.64712 * 2 1 4 4 C 1.35129 * 107.10922 * 180.29968 * 3 2 1 5 5 O 1.33924 * 108.77477 * 359.74392 * 4 3 2 6 6 C 1.34924 * 109.38300 * 0.02562 * 5 4 3 7 7 C 1.46655 * 125.98540 * 180.02562 * 6 5 4 8 8 O 1.21702 * 119.99460 * 186.89147 * 7 6 5 9 9 N 1.34777 * 120.00100 * 6.89585 * 7 6 5 10 10 C 1.48215 * 119.96474 * 176.76684 * 9 7 6 11 11 C 1.47150 * 110.19783 * 102.58286 * 10 9 7 12 12 C 1.53392 * 112.04772 * 58.39225 * 11 10 9 13 13 N 1.43463 * 107.85582 * 281.53685 * 12 11 10 14 14 C 1.36931 * 118.94298 * 273.58553 * 13 12 11 15 15 H 1.08001 * 119.99557 * 17.80491 * 14 13 12 16 16 C 1.38813 * 120.00463 * 197.80844 * 14 13 12 17 17 N 1.31628 * 119.99776 * 18.16224 * 16 14 13 18 18 Si 1.86798 * 120.00181 * 198.17073 * 16 14 13 19 19 H 1.48494 * 109.47341 * 59.99269 * 18 16 14 20 20 H 1.48500 * 109.46868 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46791 * 299.99496 * 18 16 14 22 22 C 1.48863 * 122.11720 * 93.60904 * 13 12 11 23 23 C 1.43614 * 119.97235 * 356.74274 * 9 7 6 24 24 H 1.09004 * 109.47038 * 270.13445 * 1 2 3 25 25 H 1.09003 * 109.47141 * 30.12954 * 1 2 3 26 26 H 1.09002 * 109.47246 * 150.13247 * 1 2 3 27 27 H 1.07994 * 126.44352 * 0.04619 * 3 2 1 28 28 H 1.08004 * 125.60727 * 179.70995 * 4 3 2 29 29 H 1.09002 * 109.32225 * 222.75682 * 10 9 7 30 30 H 1.08997 * 109.32769 * 342.40751 * 10 9 7 31 31 H 1.09000 * 109.00425 * 178.81324 * 11 10 9 32 32 H 1.08997 * 109.00467 * 297.59790 * 11 10 9 33 33 H 1.08994 * 109.83274 * 161.94321 * 12 11 10 34 34 H 1.09004 * 109.83368 * 41.13737 * 12 11 10 35 35 H 0.96991 * 119.99657 * 180.02562 * 17 16 14 36 36 H 1.09000 * 109.47895 * 200.63517 * 22 13 12 37 37 H 1.09005 * 109.48785 * 80.60861 * 22 13 12 38 38 H 1.09007 * 108.87315 * 31.44506 * 23 9 7 39 39 H 1.08993 * 108.87464 * 149.88170 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3448 1.1263 0.0000 4 6 3.6183 0.6744 -0.0068 5 8 3.6005 -0.6648 -0.0052 6 6 2.3219 -1.0956 0.0020 7 6 1.8842 -2.4953 0.0063 8 8 0.7033 -2.7638 -0.1137 9 7 2.7897 -3.4841 0.1434 10 6 2.3400 -4.8943 0.2197 11 6 2.5636 -5.5693 -1.0686 12 6 4.0388 -5.5363 -1.4876 13 7 4.3154 -4.2338 -2.0215 14 6 4.0706 -3.9954 -3.3475 15 1 3.4235 -4.6569 -3.9045 16 6 4.6539 -2.9038 -3.9759 17 7 5.6972 -2.3122 -3.4334 18 14 3.9584 -2.2740 -5.5911 19 1 2.5454 -1.8620 -5.3944 20 1 4.7542 -1.1079 -6.0515 21 1 4.0224 -3.3515 -6.6111 22 6 4.8606 -3.1331 -1.1805 23 6 4.1894 -3.1704 0.2147 24 1 -0.3633 0.0024 1.0277 25 1 -0.3633 0.8888 -0.5159 26 1 -0.3634 -0.8912 -0.5118 27 1 2.0307 2.1595 0.0007 28 1 4.5046 1.2916 -0.0130 29 1 2.9009 -5.4100 0.9992 30 1 1.2776 -4.9216 0.4616 31 1 2.2463 -6.6087 -0.9845 32 1 1.9648 -5.0778 -1.8354 33 1 4.2239 -6.2937 -2.2492 34 1 4.6736 -5.7221 -0.6212 35 1 6.1046 -1.5492 -3.8722 36 1 4.6546 -2.1750 -1.6575 37 1 5.9375 -3.2597 -1.0692 38 1 4.3087 -2.1964 0.6895 39 1 4.6884 -3.9220 0.8262 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980707678.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:52 Heat of formation + Delta-G solvation = 21.665492 kcal Electronic energy + Delta-G solvation = -23355.366130 eV Core-core repulsion = 20073.261363 eV Total energy + Delta-G solvation = -3282.104766 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.39864 -39.41271 -37.02840 -34.45136 -33.62225 -32.75787 -30.85744 -29.96295 -27.95137 -27.02917 -25.39643 -23.66889 -23.01052 -21.52525 -20.40240 -19.68780 -18.81809 -17.19675 -16.48053 -16.20146 -15.79293 -15.76939 -14.87139 -14.30456 -14.09232 -13.67172 -13.36214 -13.19472 -13.01519 -12.86138 -12.73541 -12.43153 -12.27486 -12.19588 -11.57049 -11.50909 -11.26082 -10.91459 -10.71860 -10.51470 -10.21363 -10.12956 -9.78796 -9.71994 -9.56999 -9.36962 -8.39211 -8.34782 -7.96181 -6.75379 -5.75030 -3.10058 1.47137 2.63586 3.05315 3.40866 3.45964 3.50503 3.59537 3.69162 4.54518 4.90456 5.05414 5.12624 5.34735 5.44822 5.53648 5.67672 5.69466 5.80386 5.81809 5.90877 5.92523 5.93406 6.15764 6.20394 6.28040 6.39156 6.44776 6.51890 6.58172 6.69677 6.81491 6.93053 7.08343 7.23894 7.44062 7.65114 7.82631 7.96199 8.44885 8.56160 9.23994 9.93523 10.35308 11.32310 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014053 B = 0.009132 C = 0.007068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.983674 B = 3065.459585 C = 3960.293369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.103 4.103 3 C -0.230 4.230 4 C -0.012 4.012 5 O -0.141 6.141 6 C -0.065 4.065 7 C 0.604 3.396 8 O -0.538 6.538 9 N -0.573 5.573 10 C 0.131 3.869 11 C -0.171 4.171 12 C 0.161 3.839 13 N -0.594 5.594 14 C -0.248 4.248 15 H 0.067 0.933 16 C 0.000 4.000 17 N -0.908 5.908 18 Si 0.896 3.104 19 H -0.285 1.285 20 H -0.290 1.290 21 H -0.284 1.284 22 C 0.163 3.837 23 C 0.071 3.929 24 H 0.066 0.934 25 H 0.062 0.938 26 H 0.087 0.913 27 H 0.149 0.851 28 H 0.204 0.796 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.045 0.955 34 H 0.034 0.966 35 H 0.252 0.748 36 H 0.095 0.905 37 H 0.036 0.964 38 H 0.082 0.918 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.843 3.102 10.256 11.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.106 4.106 3 C -0.250 4.250 4 C -0.082 4.082 5 O -0.036 6.036 6 C -0.117 4.117 7 C 0.392 3.608 8 O -0.419 6.419 9 N -0.303 5.303 10 C 0.010 3.990 11 C -0.212 4.212 12 C 0.033 3.967 13 N -0.316 5.316 14 C -0.377 4.377 15 H 0.085 0.915 16 C -0.197 4.197 17 N -0.554 5.554 18 Si 0.726 3.274 19 H -0.212 1.212 20 H -0.216 1.216 21 H -0.210 1.210 22 C 0.038 3.962 23 C -0.053 4.053 24 H 0.085 0.915 25 H 0.081 0.919 26 H 0.106 0.894 27 H 0.167 0.833 28 H 0.221 0.779 29 H 0.082 0.918 30 H 0.097 0.903 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.064 0.936 34 H 0.052 0.948 35 H 0.062 0.938 36 H 0.113 0.887 37 H 0.054 0.946 38 H 0.100 0.900 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.066 2.840 10.143 11.291 hybrid contribution -0.157 0.711 -1.052 1.279 sum -4.223 3.551 9.091 10.635 Atomic orbital electron populations 1.20369 0.88738 1.03497 1.02167 1.20522 0.97342 0.91127 1.01618 1.21614 0.92557 0.99691 1.11096 1.24387 0.99649 0.81844 1.02346 1.84432 1.27901 1.21618 1.69671 1.21880 0.81540 0.94820 1.13469 1.16604 0.85373 0.81985 0.76791 1.90750 1.16475 1.82355 1.52272 1.47300 1.06828 1.06281 1.69883 1.20614 1.00376 0.79882 0.98094 1.21823 1.02664 0.98778 0.97929 1.20213 0.91607 0.88504 0.96408 1.43770 1.75235 1.05909 1.06683 1.19191 1.22189 1.10174 0.86188 0.91529 1.24786 0.96484 1.00411 0.98040 1.70040 1.20686 1.24408 1.40256 0.86447 0.78767 0.78432 0.83727 1.21207 1.21638 1.21004 1.22066 0.94102 0.94217 0.85823 1.22507 0.80524 1.00604 1.01702 0.91494 0.91929 0.89415 0.83301 0.77915 0.91825 0.90272 0.92523 0.91122 0.93646 0.94785 0.93778 0.88696 0.94603 0.90012 0.92256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.37 9.89 36.00 0.36 -1.01 16 2 C -0.10 -1.76 6.20 -104.43 -0.65 -2.41 16 3 C -0.23 -3.32 10.83 -39.88 -0.43 -3.76 16 4 C -0.01 -0.18 12.08 29.63 0.36 0.18 16 5 O -0.14 -2.56 6.35 4.98 0.03 -2.52 16 6 C -0.07 -1.25 6.75 -36.80 -0.25 -1.50 16 7 C 0.60 12.49 7.64 -12.86 -0.10 12.39 16 8 O -0.54 -11.81 14.17 5.19 0.07 -11.73 16 9 N -0.57 -11.07 2.45 -178.21 -0.44 -11.51 16 10 C 0.13 2.24 5.70 -5.91 -0.03 2.21 16 11 C -0.17 -3.13 5.60 -29.34 -0.16 -3.30 16 12 C 0.16 3.30 5.63 -5.45 -0.03 3.27 16 13 N -0.59 -14.63 2.55 -172.25 -0.44 -15.07 16 14 C -0.25 -6.86 9.32 -15.06 -0.14 -7.00 16 15 H 0.07 1.84 7.89 -52.49 -0.41 1.43 16 16 C 0.00 0.00 4.93 -17.43 -0.09 -0.09 16 17 N -0.91 -25.89 10.64 55.49 0.59 -25.30 16 18 Si 0.90 22.43 29.59 -169.99 -5.03 17.40 16 19 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 20 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 21 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 22 C 0.16 3.81 5.10 -1.75 -0.01 3.80 16 23 C 0.07 1.35 4.82 -4.58 -0.02 1.32 16 24 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.09 1.51 6.33 -51.93 -0.33 1.18 16 27 H 0.15 1.68 8.06 -52.49 -0.42 1.26 16 28 H 0.20 2.08 8.06 -52.48 -0.42 1.66 16 29 H 0.06 0.91 8.06 -51.93 -0.42 0.50 16 30 H 0.08 1.34 7.15 -51.93 -0.37 0.97 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.07 1.55 7.90 -51.93 -0.41 1.14 16 33 H 0.05 0.94 8.02 -51.93 -0.42 0.52 16 34 H 0.03 0.63 7.59 -51.93 -0.39 0.24 16 35 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 36 H 0.09 2.51 5.23 -51.93 -0.27 2.23 16 37 H 0.04 0.88 8.09 -51.93 -0.42 0.46 16 38 H 0.08 1.47 4.96 -51.93 -0.26 1.21 16 39 H 0.06 0.99 7.73 -51.93 -0.40 0.59 16 LS Contribution 309.36 15.07 4.66 4.66 Total: -1.00 -31.80 309.36 -7.10 -38.90 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -5.35 Total: 1.05 kcal Atomic # 6 Polarization: 5.31 SS G_CDS: -1.20 Total: 4.11 kcal Atomic # 7 Polarization: -51.59 SS G_CDS: -0.29 Total: -51.88 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: 0.11 Total: -14.26 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.03 Total: 17.40 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.80 -7.10 -38.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980707678.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.568 kcal (2) G-P(sol) polarization free energy of solvation -31.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds