Wall clock time and date at job start Tue Mar 31 2020 01:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.40376 * 126.64712 * 2 1 4 4 C 1.35129 * 107.10922 * 180.29968 * 3 2 1 5 5 O 1.33924 * 108.77477 * 359.74392 * 4 3 2 6 6 C 1.34924 * 109.38300 * 0.02562 * 5 4 3 7 7 C 1.46655 * 125.98540 * 180.02562 * 6 5 4 8 8 O 1.21702 * 119.99460 * 186.89147 * 7 6 5 9 9 N 1.34777 * 120.00100 * 6.89585 * 7 6 5 10 10 C 1.48215 * 119.96474 * 176.76684 * 9 7 6 11 11 C 1.47150 * 110.19783 * 102.58286 * 10 9 7 12 12 C 1.53392 * 112.04772 * 58.39225 * 11 10 9 13 13 N 1.43463 * 107.85582 * 281.53685 * 12 11 10 14 14 C 1.36931 * 118.94298 * 273.58553 * 13 12 11 15 15 H 1.08001 * 119.99557 * 17.80491 * 14 13 12 16 16 C 1.38813 * 120.00463 * 197.80844 * 14 13 12 17 17 N 1.31628 * 119.99776 * 18.16224 * 16 14 13 18 18 Si 1.86798 * 120.00181 * 198.17073 * 16 14 13 19 19 H 1.48494 * 109.47341 * 59.99269 * 18 16 14 20 20 H 1.48500 * 109.46868 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46791 * 299.99496 * 18 16 14 22 22 C 1.48863 * 122.11720 * 93.60904 * 13 12 11 23 23 C 1.43614 * 119.97235 * 356.74274 * 9 7 6 24 24 H 1.09004 * 109.47038 * 270.13445 * 1 2 3 25 25 H 1.09003 * 109.47141 * 30.12954 * 1 2 3 26 26 H 1.09002 * 109.47246 * 150.13247 * 1 2 3 27 27 H 1.07994 * 126.44352 * 0.04619 * 3 2 1 28 28 H 1.08004 * 125.60727 * 179.70995 * 4 3 2 29 29 H 1.09002 * 109.32225 * 222.75682 * 10 9 7 30 30 H 1.08997 * 109.32769 * 342.40751 * 10 9 7 31 31 H 1.09000 * 109.00425 * 178.81324 * 11 10 9 32 32 H 1.08997 * 109.00467 * 297.59790 * 11 10 9 33 33 H 1.08994 * 109.83274 * 161.94321 * 12 11 10 34 34 H 1.09004 * 109.83368 * 41.13737 * 12 11 10 35 35 H 0.96991 * 119.99657 * 180.02562 * 17 16 14 36 36 H 1.09000 * 109.47895 * 200.63517 * 22 13 12 37 37 H 1.09005 * 109.48785 * 80.60861 * 22 13 12 38 38 H 1.09007 * 108.87315 * 31.44506 * 23 9 7 39 39 H 1.08993 * 108.87464 * 149.88170 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3448 1.1263 0.0000 4 6 3.6183 0.6744 -0.0068 5 8 3.6005 -0.6648 -0.0052 6 6 2.3219 -1.0956 0.0020 7 6 1.8842 -2.4953 0.0063 8 8 0.7033 -2.7638 -0.1137 9 7 2.7897 -3.4841 0.1434 10 6 2.3400 -4.8943 0.2197 11 6 2.5636 -5.5693 -1.0686 12 6 4.0388 -5.5363 -1.4876 13 7 4.3154 -4.2338 -2.0215 14 6 4.0706 -3.9954 -3.3475 15 1 3.4235 -4.6569 -3.9045 16 6 4.6539 -2.9038 -3.9759 17 7 5.6972 -2.3122 -3.4334 18 14 3.9584 -2.2740 -5.5911 19 1 2.5454 -1.8620 -5.3944 20 1 4.7542 -1.1079 -6.0515 21 1 4.0224 -3.3515 -6.6111 22 6 4.8606 -3.1331 -1.1805 23 6 4.1894 -3.1704 0.2147 24 1 -0.3633 0.0024 1.0277 25 1 -0.3633 0.8888 -0.5159 26 1 -0.3634 -0.8912 -0.5118 27 1 2.0307 2.1595 0.0007 28 1 4.5046 1.2916 -0.0130 29 1 2.9009 -5.4100 0.9992 30 1 1.2776 -4.9216 0.4616 31 1 2.2463 -6.6087 -0.9845 32 1 1.9648 -5.0778 -1.8354 33 1 4.2239 -6.2937 -2.2492 34 1 4.6736 -5.7221 -0.6212 35 1 6.1046 -1.5492 -3.8722 36 1 4.6546 -2.1750 -1.6575 37 1 5.9375 -3.2597 -1.0692 38 1 4.3087 -2.1964 0.6895 39 1 4.6884 -3.9220 0.8262 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980707678.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:50 Heat of formation + Delta-G solvation = 2.415912 kcal Electronic energy + Delta-G solvation = -23356.200854 eV Core-core repulsion = 20073.261363 eV Total energy + Delta-G solvation = -3282.939491 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -43.65897 -40.92180 -38.68162 -36.13064 -34.98916 -34.35660 -32.75051 -31.21677 -29.53370 -28.50183 -27.03660 -25.51040 -24.47609 -22.79779 -21.84622 -21.35344 -20.21475 -18.88619 -18.14373 -17.67285 -17.21676 -17.16622 -16.62977 -15.93257 -15.72225 -15.45993 -14.92166 -14.57921 -14.53259 -14.10728 -14.03830 -13.97890 -13.81512 -13.52732 -13.22868 -13.08007 -12.79923 -12.73629 -12.49201 -12.31752 -12.03867 -11.75589 -11.68919 -11.47825 -11.07309 -10.61144 -10.40191 -9.78953 -9.37623 -8.73169 -7.85028 -5.20795 0.12938 1.38341 1.42092 1.46183 1.47689 1.74852 2.19878 2.28028 2.49664 3.26350 3.60604 3.74229 3.86834 3.96056 4.10207 4.19808 4.31717 4.49690 4.54664 4.58822 4.62799 4.69344 4.75457 4.77175 4.88222 4.97835 5.02912 5.16228 5.21853 5.27665 5.33053 5.46644 5.54469 5.58803 5.76539 5.80735 6.02021 6.38586 6.44344 7.06216 7.17540 7.96642 8.32332 9.18788 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014053 B = 0.009132 C = 0.007068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.983674 B = 3065.459585 C = 3960.293369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.106 4.106 3 C -0.231 4.231 4 C -0.006 4.006 5 O -0.160 6.160 6 C -0.112 4.112 7 C 0.593 3.407 8 O -0.565 6.565 9 N -0.577 5.577 10 C 0.127 3.873 11 C -0.156 4.156 12 C 0.156 3.844 13 N -0.609 5.609 14 C -0.257 4.257 15 H 0.057 0.943 16 C -0.045 4.045 17 N -0.925 5.925 18 Si 0.946 3.054 19 H -0.295 1.295 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.173 3.827 23 C 0.085 3.915 24 H 0.083 0.917 25 H 0.087 0.913 26 H 0.059 0.941 27 H 0.184 0.816 28 H 0.244 0.756 29 H 0.102 0.898 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.026 0.974 33 H 0.039 0.961 34 H 0.059 0.941 35 H 0.248 0.752 36 H 0.061 0.939 37 H 0.017 0.983 38 H 0.093 0.907 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.848 3.698 11.476 12.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.109 4.109 3 C -0.250 4.250 4 C -0.075 4.075 5 O -0.056 6.056 6 C -0.163 4.163 7 C 0.383 3.617 8 O -0.447 6.447 9 N -0.306 5.306 10 C 0.006 3.994 11 C -0.196 4.196 12 C 0.029 3.971 13 N -0.332 5.332 14 C -0.387 4.387 15 H 0.075 0.925 16 C -0.241 4.241 17 N -0.572 5.572 18 Si 0.776 3.224 19 H -0.223 1.223 20 H -0.213 1.213 21 H -0.203 1.203 22 C 0.047 3.953 23 C -0.040 4.040 24 H 0.102 0.898 25 H 0.105 0.895 26 H 0.078 0.922 27 H 0.202 0.798 28 H 0.260 0.740 29 H 0.121 0.879 30 H 0.097 0.903 31 H 0.110 0.890 32 H 0.045 0.955 33 H 0.057 0.943 34 H 0.077 0.923 35 H 0.058 0.942 36 H 0.079 0.921 37 H 0.035 0.965 38 H 0.110 0.890 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.071 3.401 11.378 12.554 hybrid contribution -0.159 0.549 -1.426 1.537 sum -4.230 3.950 9.952 11.513 Atomic orbital electron populations 1.20391 0.87748 1.03271 1.03156 1.21016 0.98377 0.91613 0.99880 1.22010 0.91914 1.00584 1.10472 1.25323 1.01452 0.80804 0.99921 1.84372 1.27516 1.23436 1.70288 1.21829 0.82548 0.94798 1.17158 1.16964 0.85356 0.83023 0.76384 1.90713 1.17377 1.83064 1.53585 1.47449 1.06712 1.07004 1.69454 1.20812 1.01183 0.79029 0.98354 1.21623 1.00143 1.00644 0.97229 1.20416 0.93247 0.86472 0.97014 1.43998 1.75359 1.07795 1.05999 1.19386 1.21501 1.10088 0.87773 0.92514 1.25343 0.97098 1.00942 1.00675 1.70167 1.21393 1.24554 1.41108 0.85649 0.77393 0.78061 0.81293 1.22282 1.21304 1.20252 1.21802 0.93377 0.92336 0.87780 1.22274 0.80281 1.02398 0.99023 0.89850 0.89453 0.92193 0.79831 0.73992 0.87947 0.90254 0.88972 0.95467 0.94278 0.92250 0.94230 0.92070 0.96537 0.88987 0.89361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.60 9.89 71.23 0.70 -1.89 16 2 C -0.11 -3.51 6.20 -19.74 -0.12 -3.63 16 3 C -0.23 -6.08 10.83 22.07 0.24 -5.84 16 4 C -0.01 -0.15 12.08 67.10 0.81 0.66 16 5 O -0.16 -5.70 6.35 -5.08 -0.03 -5.74 16 6 C -0.11 -4.31 6.75 24.07 0.16 -4.15 16 7 C 0.59 24.76 7.64 86.44 0.66 25.42 16 8 O -0.56 -25.35 14.17 -4.35 -0.06 -25.41 16 9 N -0.58 -21.88 2.45 -835.95 -2.05 -23.93 16 10 C 0.13 4.09 5.70 84.23 0.48 4.57 16 11 C -0.16 -5.52 5.60 28.91 0.16 -5.36 16 12 C 0.16 6.20 5.63 87.07 0.49 6.69 16 13 N -0.61 -30.17 2.55 -698.87 -1.78 -31.96 16 14 C -0.26 -14.49 9.32 84.03 0.78 -13.70 16 15 H 0.06 3.23 7.89 -2.91 -0.02 3.20 16 16 C -0.05 -2.59 4.93 84.86 0.42 -2.17 16 17 N -0.92 -53.61 10.64 21.65 0.23 -53.38 16 18 Si 0.95 46.86 29.59 68.60 2.03 48.89 16 19 H -0.30 -14.98 7.11 99.48 0.71 -14.27 16 20 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 21 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 22 C 0.17 8.09 5.10 86.56 0.44 8.54 16 23 C 0.08 3.11 4.82 87.55 0.42 3.53 16 24 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 25 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 26 H 0.06 2.10 6.33 -2.39 -0.02 2.08 16 27 H 0.18 3.41 8.06 -2.91 -0.02 3.39 16 28 H 0.24 4.16 8.06 -2.91 -0.02 4.14 16 29 H 0.10 2.54 8.06 -2.39 -0.02 2.52 16 30 H 0.08 2.59 7.15 -2.39 -0.02 2.57 16 31 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 32 H 0.03 1.19 7.90 -2.39 -0.02 1.17 16 33 H 0.04 1.59 8.02 -2.39 -0.02 1.57 16 34 H 0.06 2.06 7.59 -2.38 -0.02 2.05 16 35 H 0.25 14.04 8.31 -92.72 -0.77 13.27 16 36 H 0.06 3.30 5.23 -2.39 -0.01 3.28 16 37 H 0.02 0.83 8.09 -2.38 -0.02 0.81 16 38 H 0.09 3.22 4.96 -2.38 -0.01 3.21 16 39 H 0.09 2.71 7.73 -2.39 -0.02 2.69 16 Total: -1.00 -71.31 309.36 5.04 -66.28 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: 1.05 Total: 12.62 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: 5.65 Total: 12.64 kcal Atomic # 7 Polarization: -105.67 SS G_CDS: -3.60 Total: -109.27 kcal Atomic # 8 Polarization: -31.06 SS G_CDS: -0.09 Total: -31.15 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.89 kcal Total: -71.31 5.04 -66.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980707678.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.694 kcal (2) G-P(sol) polarization free energy of solvation -71.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds