Wall clock time and date at job start Tue Mar 31 2020 00:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34173 * 125.43752 * 2 1 4 4 C 1.47022 * 105.95732 * 180.12892 * 3 2 1 5 5 C 1.47378 * 127.19546 * 179.89045 * 4 3 2 6 6 O 1.21615 * 120.00012 * 15.55363 * 5 4 3 7 7 N 1.34770 * 119.99847 * 195.54621 * 5 4 3 8 8 C 1.48216 * 119.96920 * 176.86608 * 7 5 4 9 9 C 1.47137 * 110.34233 * 102.47135 * 8 7 5 10 10 C 1.53802 * 111.84019 * 58.29989 * 9 8 7 11 11 N 1.43462 * 107.95558 * 281.66266 * 10 9 8 12 12 C 1.36938 * 118.94596 * 273.60637 * 11 10 9 13 13 H 1.07995 * 119.99432 * 23.00761 * 12 11 10 14 14 C 1.38813 * 120.00305 * 203.00043 * 12 11 10 15 15 N 1.31616 * 119.99610 * 35.38702 * 14 12 11 16 16 Si 1.86800 * 119.99935 * 215.38633 * 14 12 11 17 17 H 1.48495 * 109.46982 * 180.02562 * 16 14 12 18 18 H 1.48496 * 109.47179 * 60.00080 * 16 14 12 19 19 H 1.48499 * 109.46866 * 300.00123 * 16 14 12 20 20 C 1.48862 * 122.11688 * 93.89261 * 11 10 9 21 21 C 1.43625 * 119.97426 * 356.84560 * 7 5 4 22 22 C 1.36420 * 105.61306 * 359.63258 * 4 3 2 23 23 O 1.33658 * 108.39404 * 0.22152 * 22 4 3 24 24 H 1.09001 * 109.47062 * 180.26416 * 1 2 3 25 25 H 1.08996 * 109.46656 * 300.26150 * 1 2 3 26 26 H 1.08996 * 109.47292 * 60.26562 * 1 2 3 27 27 H 1.08004 * 127.02782 * 0.02562 * 3 2 1 28 28 H 1.08996 * 109.32498 * 342.20573 * 8 7 5 29 29 H 1.08998 * 109.18708 * 222.65016 * 8 7 5 30 30 H 1.09003 * 109.00703 * 297.69471 * 9 8 7 31 31 H 1.09003 * 109.01138 * 178.91017 * 9 8 7 32 32 H 1.09002 * 109.76324 * 162.05132 * 10 9 8 33 33 H 1.08999 * 109.80688 * 41.30764 * 10 9 8 34 34 H 0.96996 * 120.00184 * 5.85925 * 15 14 12 35 35 H 1.09005 * 109.48220 * 80.34370 * 20 11 10 36 36 H 1.09004 * 109.48182 * 200.37491 * 20 11 10 37 37 H 1.09001 * 108.87070 * 31.46663 * 21 7 5 38 38 H 1.08999 * 108.87429 * 150.00164 * 21 7 5 39 39 H 1.07994 * 125.80285 * 180.23148 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0932 0.0000 4 6 3.6710 0.6029 -0.0032 5 6 4.9025 1.4126 -0.0066 6 8 4.8538 2.5946 0.2753 7 7 6.0825 0.8430 -0.3221 8 6 7.3092 1.6719 -0.3932 9 6 8.1265 1.4806 0.8152 10 6 8.5236 0.0076 1.0102 11 7 7.3923 -0.6872 1.5539 12 6 7.2091 -0.6954 2.9110 13 1 7.6494 0.0802 3.5199 14 6 6.4574 -1.7005 3.5038 15 7 6.4990 -2.9246 3.0220 16 14 5.3868 -1.3158 4.9855 17 1 4.6913 -2.5510 5.4277 18 1 4.3820 -0.2867 4.6162 19 1 6.2365 -0.8040 6.0905 20 6 6.4145 -1.4048 0.6908 21 6 6.1504 -0.5667 -0.5886 22 6 3.5791 -0.7582 0.0036 23 8 2.2852 -1.0935 0.0055 24 1 -0.3633 -1.0277 0.0047 25 1 -0.3632 0.5179 0.8876 26 1 -0.3634 0.5097 -0.8923 27 1 1.9596 2.1230 0.0004 28 1 7.0304 2.7222 -0.4776 29 1 7.8878 1.3808 -1.2698 30 1 7.5586 1.8132 1.6842 31 1 9.0305 2.0839 0.7316 32 1 9.3640 -0.0592 1.7011 33 1 8.7993 -0.4307 0.0510 34 1 7.1177 -3.1440 2.3079 35 1 6.8196 -2.3783 0.4143 36 1 5.4802 -1.5410 1.2355 37 1 5.2078 -0.8874 -1.0322 38 1 6.9555 -0.7527 -1.2995 39 1 4.4103 -1.4476 0.0071 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981039943.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:33 Heat of formation + Delta-G solvation = 30.876273 kcal Electronic energy + Delta-G solvation = -23064.061539 eV Core-core repulsion = 19782.356182 eV Total energy + Delta-G solvation = -3281.705357 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.37612 -39.64007 -37.05666 -34.47401 -33.58597 -32.79348 -31.44453 -30.80798 -27.95236 -26.67347 -25.44858 -23.80725 -23.32343 -21.37750 -20.71500 -19.84341 -18.82875 -17.28984 -16.98835 -16.27937 -16.05515 -15.81565 -14.84496 -14.49977 -14.28668 -13.74151 -13.48750 -13.25288 -13.13267 -13.02861 -12.95679 -12.79078 -12.51524 -12.23980 -11.91775 -11.71454 -11.24321 -11.02563 -10.71868 -10.44979 -10.36400 -10.30276 -10.01251 -9.59498 -9.53403 -9.40404 -8.35094 -8.24755 -8.17477 -6.98596 -6.18508 -3.20242 1.68646 2.25121 3.04626 3.41802 3.49203 3.57075 3.72106 3.72898 4.57697 4.73282 4.88023 4.97056 5.08634 5.22074 5.32472 5.41361 5.44218 5.46058 5.57406 5.61426 5.68983 5.78155 5.83386 5.91355 5.93933 6.12685 6.21146 6.31164 6.40987 6.54704 6.55549 6.70874 6.74376 6.91008 7.14172 7.24806 7.85549 8.03468 8.50457 8.63471 9.07074 9.79521 10.18061 11.09879 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.013682 B = 0.008802 C = 0.006443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.933676 B = 3180.217844 C = 4344.528131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.025 4.025 3 C -0.165 4.165 4 C -0.228 4.228 5 C 0.593 3.407 6 O -0.550 6.550 7 N -0.580 5.580 8 C 0.133 3.867 9 C -0.170 4.170 10 C 0.164 3.836 11 N -0.588 5.588 12 C -0.361 4.361 13 H 0.057 0.943 14 C -0.013 4.013 15 N -0.900 5.900 16 Si 1.039 2.961 17 H -0.285 1.285 18 H -0.293 1.293 19 H -0.292 1.292 20 C 0.124 3.876 21 C 0.062 3.938 22 C 0.005 3.995 23 O -0.174 6.174 24 H 0.076 0.924 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.155 0.845 28 H 0.079 0.921 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.048 0.952 33 H 0.032 0.968 34 H 0.267 0.733 35 H 0.040 0.960 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.977 3.560 -10.213 12.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.074 4.074 3 C -0.185 4.185 4 C -0.232 4.232 5 C 0.383 3.617 6 O -0.430 6.430 7 N -0.311 5.311 8 C 0.012 3.988 9 C -0.211 4.211 10 C 0.036 3.964 11 N -0.310 5.310 12 C -0.489 4.489 13 H 0.074 0.926 14 C -0.216 4.216 15 N -0.538 5.538 16 Si 0.869 3.131 17 H -0.211 1.211 18 H -0.220 1.220 19 H -0.219 1.219 20 C -0.002 4.002 21 C -0.063 4.063 22 C -0.063 4.063 23 O -0.070 6.070 24 H 0.095 0.905 25 H 0.103 0.897 26 H 0.101 0.899 27 H 0.172 0.828 28 H 0.098 0.902 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.050 0.950 34 H 0.077 0.923 35 H 0.057 0.943 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.090 0.910 39 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -7.205 3.253 -9.013 11.989 hybrid contribution 1.419 0.833 -0.807 1.833 sum -5.786 4.086 -9.820 12.108 Atomic orbital electron populations 1.20277 0.85030 1.03943 1.03432 1.22262 0.94099 0.84028 1.07011 1.22379 0.90096 0.99408 1.06588 1.21448 0.94595 0.93351 1.13853 1.17216 0.82129 0.86311 0.76092 1.90702 1.86629 1.16251 1.49415 1.47140 1.07412 1.08143 1.68424 1.20571 0.84532 0.95623 0.98117 1.21843 0.98980 1.01262 0.99005 1.20295 0.90060 0.89732 0.96302 1.43605 1.23214 1.61197 1.03022 1.19838 1.36724 1.09556 0.82795 0.92561 1.25557 1.01491 0.91782 1.02779 1.70852 1.38856 1.16871 1.27257 0.83905 0.77419 0.75628 0.76159 1.21062 1.22018 1.21852 1.22356 0.94973 0.93068 0.89840 1.22567 1.02297 0.81944 0.99514 1.26107 0.83870 0.96672 0.99698 1.83788 1.16823 1.35341 1.71059 0.90526 0.89740 0.89881 0.82769 0.90239 0.91961 0.91016 0.92449 0.93327 0.94988 0.92257 0.94270 0.90698 0.90033 0.91045 0.74900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.68 10.40 36.01 0.37 -0.31 16 2 C -0.03 -0.37 7.28 -35.74 -0.26 -0.63 16 3 C -0.17 -2.75 10.93 -37.46 -0.41 -3.16 16 4 C -0.23 -4.33 6.07 -103.27 -0.63 -4.96 16 5 C 0.59 12.35 7.66 -12.54 -0.10 12.26 16 6 O -0.55 -12.90 16.47 5.26 0.09 -12.81 16 7 N -0.58 -10.83 2.46 -177.73 -0.44 -11.27 16 8 C 0.13 2.26 5.68 -5.91 -0.03 2.22 16 9 C -0.17 -3.12 5.64 -29.13 -0.16 -3.29 16 10 C 0.16 3.28 5.63 -5.23 -0.03 3.26 16 11 N -0.59 -13.85 2.42 -171.78 -0.42 -14.26 16 12 C -0.36 -9.86 9.05 -15.06 -0.14 -10.00 16 13 H 0.06 1.61 8.03 -52.49 -0.42 1.19 16 14 C -0.01 -0.35 4.34 -17.43 -0.08 -0.43 16 15 N -0.90 -25.68 12.64 55.49 0.70 -24.97 16 16 Si 1.04 25.67 30.04 -169.99 -5.11 20.57 16 17 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 18 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 C 0.12 2.59 4.45 -1.57 -0.01 2.59 16 21 C 0.06 1.05 4.72 -4.40 -0.02 1.03 16 22 C 0.01 0.09 9.26 30.08 0.28 0.37 16 23 O -0.17 -2.88 10.52 7.65 0.08 -2.80 16 24 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.15 2.34 8.06 -52.48 -0.42 1.91 16 28 H 0.08 1.38 7.16 -51.93 -0.37 1.01 16 29 H 0.06 0.88 8.05 -51.93 -0.42 0.46 16 30 H 0.07 1.60 7.91 -51.93 -0.41 1.19 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.05 1.01 8.02 -51.93 -0.42 0.59 16 33 H 0.03 0.57 7.59 -51.93 -0.39 0.18 16 34 H 0.27 7.59 7.09 -40.82 -0.29 7.30 16 35 H 0.04 0.82 7.44 -51.93 -0.39 0.44 16 36 H 0.07 1.75 4.89 -51.93 -0.25 1.50 16 37 H 0.08 1.22 4.39 -51.93 -0.23 0.99 16 38 H 0.07 1.04 7.72 -51.93 -0.40 0.64 16 39 H 0.24 3.93 3.15 -52.49 -0.17 3.76 16 LS Contribution 309.06 15.07 4.66 4.66 Total: -1.00 -32.96 309.06 -6.71 -39.67 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -5.07 Total: 2.27 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: -1.21 Total: -1.05 kcal Atomic # 7 Polarization: -50.35 SS G_CDS: -0.15 Total: -50.50 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: 0.17 Total: -15.61 kcal Atomic # 14 Polarization: 25.67 SS G_CDS: -5.11 Total: 20.57 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.96 -6.71 -39.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981039943.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.546 kcal (2) G-P(sol) polarization free energy of solvation -32.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds