Wall clock time and date at job start Tue Mar 31 2020 00:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34173 * 125.43752 * 2 1 4 4 C 1.47022 * 105.95732 * 180.12892 * 3 2 1 5 5 C 1.47378 * 127.19546 * 179.89045 * 4 3 2 6 6 O 1.21615 * 120.00012 * 15.55363 * 5 4 3 7 7 N 1.34770 * 119.99847 * 195.54621 * 5 4 3 8 8 C 1.48216 * 119.96920 * 176.86608 * 7 5 4 9 9 C 1.47137 * 110.34233 * 102.47135 * 8 7 5 10 10 C 1.53802 * 111.84019 * 58.29989 * 9 8 7 11 11 N 1.43462 * 107.95558 * 281.66266 * 10 9 8 12 12 C 1.36938 * 118.94596 * 273.60637 * 11 10 9 13 13 H 1.07995 * 119.99432 * 23.00761 * 12 11 10 14 14 C 1.38813 * 120.00305 * 203.00043 * 12 11 10 15 15 N 1.31616 * 119.99610 * 35.38702 * 14 12 11 16 16 Si 1.86800 * 119.99935 * 215.38633 * 14 12 11 17 17 H 1.48495 * 109.46982 * 180.02562 * 16 14 12 18 18 H 1.48496 * 109.47179 * 60.00080 * 16 14 12 19 19 H 1.48499 * 109.46866 * 300.00123 * 16 14 12 20 20 C 1.48862 * 122.11688 * 93.89261 * 11 10 9 21 21 C 1.43625 * 119.97426 * 356.84560 * 7 5 4 22 22 C 1.36420 * 105.61306 * 359.63258 * 4 3 2 23 23 O 1.33658 * 108.39404 * 0.22152 * 22 4 3 24 24 H 1.09001 * 109.47062 * 180.26416 * 1 2 3 25 25 H 1.08996 * 109.46656 * 300.26150 * 1 2 3 26 26 H 1.08996 * 109.47292 * 60.26562 * 1 2 3 27 27 H 1.08004 * 127.02782 * 0.02562 * 3 2 1 28 28 H 1.08996 * 109.32498 * 342.20573 * 8 7 5 29 29 H 1.08998 * 109.18708 * 222.65016 * 8 7 5 30 30 H 1.09003 * 109.00703 * 297.69471 * 9 8 7 31 31 H 1.09003 * 109.01138 * 178.91017 * 9 8 7 32 32 H 1.09002 * 109.76324 * 162.05132 * 10 9 8 33 33 H 1.08999 * 109.80688 * 41.30764 * 10 9 8 34 34 H 0.96996 * 120.00184 * 5.85925 * 15 14 12 35 35 H 1.09005 * 109.48220 * 80.34370 * 20 11 10 36 36 H 1.09004 * 109.48182 * 200.37491 * 20 11 10 37 37 H 1.09001 * 108.87070 * 31.46663 * 21 7 5 38 38 H 1.08999 * 108.87429 * 150.00164 * 21 7 5 39 39 H 1.07994 * 125.80285 * 180.23148 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0932 0.0000 4 6 3.6710 0.6029 -0.0032 5 6 4.9025 1.4126 -0.0066 6 8 4.8538 2.5946 0.2753 7 7 6.0825 0.8430 -0.3221 8 6 7.3092 1.6719 -0.3932 9 6 8.1265 1.4806 0.8152 10 6 8.5236 0.0076 1.0102 11 7 7.3923 -0.6872 1.5539 12 6 7.2091 -0.6954 2.9110 13 1 7.6494 0.0802 3.5199 14 6 6.4574 -1.7005 3.5038 15 7 6.4990 -2.9246 3.0220 16 14 5.3868 -1.3158 4.9855 17 1 4.6913 -2.5510 5.4277 18 1 4.3820 -0.2867 4.6162 19 1 6.2365 -0.8040 6.0905 20 6 6.4145 -1.4048 0.6908 21 6 6.1504 -0.5667 -0.5886 22 6 3.5791 -0.7582 0.0036 23 8 2.2852 -1.0935 0.0055 24 1 -0.3633 -1.0277 0.0047 25 1 -0.3632 0.5179 0.8876 26 1 -0.3634 0.5097 -0.8923 27 1 1.9596 2.1230 0.0004 28 1 7.0304 2.7222 -0.4776 29 1 7.8878 1.3808 -1.2698 30 1 7.5586 1.8132 1.6842 31 1 9.0305 2.0839 0.7316 32 1 9.3640 -0.0592 1.7011 33 1 8.7993 -0.4307 0.0510 34 1 7.1177 -3.1440 2.3079 35 1 6.8196 -2.3783 0.4143 36 1 5.4802 -1.5410 1.2355 37 1 5.2078 -0.8874 -1.0322 38 1 6.9555 -0.7527 -1.2995 39 1 4.4103 -1.4476 0.0071 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981039943.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:31 Heat of formation + Delta-G solvation = 10.268220 kcal Electronic energy + Delta-G solvation = -23064.955171 eV Core-core repulsion = 19782.356182 eV Total energy + Delta-G solvation = -3282.598989 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -43.67361 -41.15962 -38.74565 -36.22286 -35.10682 -33.98141 -33.07953 -32.31465 -29.60314 -27.81960 -27.07548 -25.56340 -24.89081 -22.81984 -21.98747 -21.57174 -20.29018 -19.18256 -18.38968 -17.69545 -17.51012 -17.19776 -16.49197 -15.97714 -15.94656 -15.59556 -15.20909 -14.77827 -14.49625 -14.32114 -14.03028 -13.99271 -13.79119 -13.72457 -13.46474 -12.98520 -12.84333 -12.66551 -12.45819 -12.14493 -12.09454 -11.97817 -11.86221 -11.44510 -11.13075 -10.81968 -10.34085 -9.73053 -9.54802 -8.92972 -8.31393 -5.30434 0.28644 0.99728 1.48577 1.54680 1.73676 1.77476 2.05339 2.22025 2.58089 3.05095 3.43764 3.50892 3.61460 3.80860 3.98536 4.03808 4.06953 4.28473 4.36334 4.41431 4.45297 4.51610 4.65485 4.73567 4.74155 4.78528 4.80750 4.91246 4.93896 5.04633 5.07028 5.15295 5.39117 5.40993 5.63813 5.87714 5.97877 6.33942 6.41061 7.07713 7.09402 7.80256 8.16985 8.93873 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.013682 B = 0.008802 C = 0.006443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.933676 B = 3180.217844 C = 4344.528131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.009 4.009 3 C -0.193 4.193 4 C -0.255 4.255 5 C 0.582 3.418 6 O -0.589 6.589 7 N -0.580 5.580 8 C 0.128 3.872 9 C -0.155 4.155 10 C 0.160 3.840 11 N -0.603 5.603 12 C -0.361 4.361 13 H 0.033 0.967 14 C -0.052 4.052 15 N -0.916 5.916 16 Si 1.076 2.924 17 H -0.282 1.282 18 H -0.300 1.300 19 H -0.280 1.280 20 C 0.127 3.873 21 C 0.070 3.930 22 C 0.004 3.996 23 O -0.178 6.178 24 H 0.090 0.910 25 H 0.099 0.901 26 H 0.109 0.891 27 H 0.162 0.838 28 H 0.073 0.927 29 H 0.107 0.893 30 H 0.022 0.978 31 H 0.089 0.911 32 H 0.034 0.966 33 H 0.065 0.935 34 H 0.260 0.740 35 H 0.040 0.960 36 H 0.046 0.954 37 H 0.103 0.897 38 H 0.107 0.893 39 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.634 3.367 -11.811 13.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.057 4.057 3 C -0.212 4.212 4 C -0.260 4.260 5 C 0.373 3.627 6 O -0.472 6.472 7 N -0.309 5.309 8 C 0.008 3.992 9 C -0.196 4.196 10 C 0.033 3.967 11 N -0.326 5.326 12 C -0.491 4.491 13 H 0.051 0.949 14 C -0.252 4.252 15 N -0.557 5.557 16 Si 0.904 3.096 17 H -0.208 1.208 18 H -0.228 1.228 19 H -0.206 1.206 20 C 0.002 3.998 21 C -0.055 4.055 22 C -0.065 4.065 23 O -0.074 6.074 24 H 0.109 0.891 25 H 0.117 0.883 26 H 0.128 0.872 27 H 0.180 0.820 28 H 0.091 0.909 29 H 0.125 0.875 30 H 0.041 0.959 31 H 0.108 0.892 32 H 0.053 0.947 33 H 0.083 0.917 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.121 0.879 38 H 0.125 0.875 39 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -7.833 3.051 -10.634 13.555 hybrid contribution 1.638 0.923 -0.322 1.908 sum -6.195 3.974 -10.956 13.198 Atomic orbital electron populations 1.20565 0.81150 1.05512 1.05398 1.23162 0.95977 0.82782 1.03824 1.22596 0.89490 1.00567 1.08570 1.21596 0.95059 0.94036 1.15268 1.17636 0.83322 0.86135 0.75647 1.90662 1.87334 1.17833 1.51345 1.47313 1.07366 1.08925 1.67307 1.20756 0.84068 0.95434 0.98974 1.21666 0.99879 1.00367 0.97684 1.20456 0.88613 0.90373 0.97271 1.43802 1.25007 1.61683 1.02148 1.19876 1.36242 1.08171 0.84833 0.94941 1.26332 1.02540 0.91707 1.04588 1.70925 1.39538 1.17215 1.27984 0.83356 0.76336 0.75196 0.74752 1.20792 1.22807 1.20601 1.22315 0.93064 0.93657 0.90808 1.22535 1.04869 0.80302 0.97822 1.26072 0.84551 0.96112 0.99742 1.83810 1.16578 1.36147 1.70888 0.89137 0.88286 0.87215 0.81996 0.90857 0.87545 0.95933 0.89235 0.94715 0.91679 0.93051 0.94215 0.93556 0.87916 0.87469 0.74633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.14 10.40 71.24 0.74 -0.40 16 2 C -0.01 -0.25 7.28 24.76 0.18 -0.07 16 3 C -0.19 -6.31 10.93 23.65 0.26 -6.05 16 4 C -0.26 -9.67 6.07 -18.99 -0.12 -9.79 16 5 C 0.58 24.32 7.66 86.65 0.66 24.99 16 6 O -0.59 -28.18 16.47 -4.08 -0.07 -28.25 16 7 N -0.58 -20.90 2.46 -834.46 -2.05 -22.95 16 8 C 0.13 4.08 5.68 84.23 0.48 4.56 16 9 C -0.16 -5.52 5.64 29.04 0.16 -5.36 16 10 C 0.16 6.18 5.63 87.21 0.49 6.67 16 11 N -0.60 -28.34 2.42 -697.37 -1.69 -30.03 16 12 C -0.36 -20.16 9.05 84.03 0.76 -19.40 16 13 H 0.03 1.93 8.03 -2.91 -0.02 1.91 16 14 C -0.05 -2.91 4.34 84.86 0.37 -2.54 16 15 N -0.92 -52.76 12.64 21.65 0.27 -52.48 16 16 Si 1.08 52.80 30.04 68.60 2.06 54.86 16 17 H -0.28 -13.66 7.11 99.48 0.71 -12.96 16 18 H -0.30 -14.96 7.11 99.48 0.71 -14.26 16 19 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 20 C 0.13 5.25 4.45 86.68 0.39 5.63 16 21 C 0.07 2.19 4.72 87.67 0.41 2.60 16 22 C 0.00 0.15 9.26 67.40 0.62 0.77 16 23 O -0.18 -5.69 10.52 4.45 0.05 -5.64 16 24 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.16 4.87 8.06 -2.91 -0.02 4.85 16 28 H 0.07 2.46 7.16 -2.39 -0.02 2.45 16 29 H 0.11 2.51 8.05 -2.39 -0.02 2.49 16 30 H 0.02 1.01 7.91 -2.39 -0.02 0.99 16 31 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 32 H 0.03 1.42 8.02 -2.39 -0.02 1.40 16 33 H 0.07 2.10 7.59 -2.39 -0.02 2.08 16 34 H 0.26 14.91 7.09 -92.71 -0.66 14.25 16 35 H 0.04 1.64 7.44 -2.38 -0.02 1.62 16 36 H 0.05 2.18 4.89 -2.38 -0.01 2.17 16 37 H 0.10 2.87 4.39 -2.39 -0.01 2.86 16 38 H 0.11 2.66 7.72 -2.39 -0.02 2.65 16 39 H 0.24 7.84 3.15 -2.91 -0.01 7.83 16 Total: -1.00 -73.66 309.06 5.17 -68.50 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: 1.18 Total: 14.38 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: 5.42 Total: 1.62 kcal Atomic # 7 Polarization: -101.99 SS G_CDS: -3.47 Total: -105.46 kcal Atomic # 8 Polarization: -33.87 SS G_CDS: -0.02 Total: -33.89 kcal Atomic # 14 Polarization: 52.80 SS G_CDS: 2.06 Total: 54.86 kcal Total: -73.66 5.17 -68.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981039943.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.765 kcal (2) G-P(sol) polarization free energy of solvation -73.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds