Wall clock time and date at job start Tue Mar 31 2020 01:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35134 * 126.44182 * 2 1 4 4 O 1.33937 * 108.76589 * 180.02562 * 3 2 1 5 5 C 1.34915 * 109.38505 * 359.97438 * 4 3 2 6 6 C 1.46653 * 125.98636 * 179.97438 * 5 4 3 7 7 O 1.21699 * 119.99948 * 186.91542 * 6 5 4 8 8 N 1.34776 * 120.00133 * 6.91208 * 6 5 4 9 9 C 1.48212 * 119.97246 * 176.85906 * 8 6 5 10 10 C 1.47145 * 110.20002 * 102.58321 * 9 8 6 11 11 C 1.53394 * 112.04359 * 58.39607 * 10 9 8 12 12 N 1.43455 * 107.86110 * 281.53960 * 11 10 9 13 13 C 1.36940 * 118.94001 * 273.58960 * 12 11 10 14 14 H 1.07996 * 119.99936 * 21.39105 * 13 12 11 15 15 C 1.38812 * 119.99594 * 201.39501 * 13 12 11 16 16 N 1.31614 * 120.00744 * 15.49254 * 15 13 12 17 17 Si 1.86806 * 119.99682 * 195.49097 * 15 13 12 18 18 H 1.48505 * 109.46940 * 89.99907 * 17 15 13 19 19 H 1.48504 * 109.47176 * 209.99926 * 17 15 13 20 20 H 1.48497 * 109.47041 * 330.00159 * 17 15 13 21 21 C 1.48856 * 122.12190 * 93.60970 * 12 11 10 22 22 C 1.43620 * 119.96832 * 356.84156 * 8 6 5 23 23 C 1.36548 * 108.02466 * 0.22799 * 5 4 3 24 24 H 1.08997 * 109.47243 * 89.98128 * 1 2 3 25 25 H 1.09003 * 109.47020 * 209.97292 * 1 2 3 26 26 H 1.09000 * 109.47036 * 329.97756 * 1 2 3 27 27 H 1.07989 * 125.61703 * 0.02562 * 3 2 1 28 28 H 1.08999 * 109.33219 * 222.76709 * 9 8 6 29 29 H 1.08999 * 109.32396 * 342.40979 * 9 8 6 30 30 H 1.09000 * 109.00522 * 178.82004 * 10 9 8 31 31 H 1.08998 * 109.00635 * 297.60379 * 10 9 8 32 32 H 1.09003 * 109.82930 * 161.94414 * 11 10 9 33 33 H 1.09006 * 109.83448 * 41.13994 * 11 10 9 34 34 H 0.97000 * 120.00963 * 179.97438 * 16 15 13 35 35 H 1.09004 * 109.48335 * 200.64065 * 21 12 11 36 36 H 1.08999 * 109.49218 * 80.61045 * 21 12 11 37 37 H 1.08995 * 108.87621 * 31.44360 * 22 8 6 38 38 H 1.09001 * 108.87563 * 149.87800 * 22 8 6 39 39 H 1.07998 * 126.64218 * 179.77334 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0871 0.0000 4 8 3.5858 0.6804 -0.0006 5 6 3.6260 -0.6681 -0.0004 6 6 4.8379 -1.4941 -0.0014 7 8 4.7513 -2.7014 -0.1280 8 7 6.0474 -0.9161 0.1379 9 6 7.2662 -1.7567 0.2067 10 6 7.9752 -1.7303 -1.0824 11 6 8.3718 -0.3063 -1.4922 12 7 7.2053 0.3408 -2.0199 13 6 6.9042 0.1849 -3.3467 14 1 7.3021 -0.6558 -3.8955 15 6 6.0876 1.1075 -3.9860 16 7 5.8511 2.2755 -3.4275 17 14 5.3243 0.6913 -5.6395 18 1 4.0051 0.0435 -5.4266 19 1 5.1429 1.9363 -6.4284 20 1 6.2181 -0.2368 -6.3777 21 6 6.3119 1.1765 -1.1720 22 6 6.1543 0.5138 0.2190 23 6 2.3408 -1.1292 -0.0048 24 1 -0.3633 0.0003 -1.0276 25 1 -0.3633 -0.8903 0.5134 26 1 -0.3633 0.8898 0.5142 27 1 1.9770 2.1145 0.0004 28 1 7.9238 -1.3755 0.9879 29 1 6.9838 -2.7829 0.4420 30 1 8.8775 -2.3366 -1.0037 31 1 7.3297 -2.1550 -1.8513 32 1 9.1493 -0.3441 -2.2552 33 1 8.7353 0.2411 -0.6225 34 1 5.2808 2.9204 -3.8744 35 1 5.3345 1.2613 -1.6470 36 1 6.7462 2.1693 -1.0544 37 1 5.2578 0.9078 0.6978 38 1 7.0195 0.7686 0.8310 39 1 2.0267 -2.1625 -0.0093 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981792753.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:57 Heat of formation + Delta-G solvation = 19.057624 kcal Electronic energy + Delta-G solvation = -23097.028913 eV Core-core repulsion = 19814.811061 eV Total energy + Delta-G solvation = -3282.217852 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = -0.39 seconds Orbital eigenvalues (eV) -42.42355 -39.44272 -36.99433 -34.43048 -33.87134 -32.71215 -30.85831 -30.14923 -27.63996 -27.15146 -25.51607 -23.66319 -23.36554 -21.09295 -20.69480 -19.72579 -18.75346 -17.08823 -16.62001 -16.25295 -15.88537 -15.77267 -14.90730 -14.29087 -14.08632 -13.67523 -13.37446 -13.28875 -13.09039 -12.99935 -12.82102 -12.51296 -12.34333 -12.21759 -11.65482 -11.55088 -11.26606 -10.91719 -10.75246 -10.51498 -10.21316 -10.15093 -9.82682 -9.72355 -9.65581 -9.41619 -8.41710 -8.36722 -8.00304 -6.71821 -5.75385 -3.14196 1.45770 2.56784 3.02204 3.40142 3.46565 3.48356 3.56958 3.67211 4.53442 4.83229 4.97000 5.14493 5.31144 5.37833 5.49518 5.55986 5.65664 5.67999 5.79277 5.82170 5.91302 5.92351 6.05521 6.11716 6.19149 6.23477 6.44625 6.50620 6.55410 6.64769 6.82006 6.89787 7.07967 7.20637 7.43024 7.62393 7.82514 7.93150 8.45754 8.52422 9.23952 9.92532 10.35584 11.32113 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.013507 B = 0.008820 C = 0.006419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.555568 B = 3173.813059 C = 4361.093512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.201 4.201 3 C -0.016 4.016 4 O -0.140 6.140 5 C -0.056 4.056 6 C 0.602 3.398 7 O -0.540 6.540 8 N -0.572 5.572 9 C 0.131 3.869 10 C -0.171 4.171 11 C 0.161 3.839 12 N -0.594 5.594 13 C -0.248 4.248 14 H 0.066 0.934 15 C 0.001 3.999 16 N -0.908 5.908 17 Si 0.898 3.102 18 H -0.289 1.289 19 H -0.291 1.291 20 H -0.280 1.280 21 C 0.166 3.834 22 C 0.071 3.929 23 C -0.132 4.132 24 H 0.066 0.934 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.203 0.797 28 H 0.064 0.936 29 H 0.079 0.921 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.046 0.954 33 H 0.034 0.966 34 H 0.252 0.748 35 H 0.089 0.911 36 H 0.038 0.962 37 H 0.082 0.918 38 H 0.060 0.940 39 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.911 -1.824 10.264 11.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.202 4.202 3 C -0.086 4.086 4 O -0.035 6.035 5 C -0.108 4.108 6 C 0.390 3.610 7 O -0.420 6.420 8 N -0.302 5.302 9 C 0.010 3.990 10 C -0.212 4.212 11 C 0.033 3.967 12 N -0.315 5.315 13 C -0.378 4.378 14 H 0.084 0.916 15 C -0.196 4.196 16 N -0.554 5.554 17 Si 0.728 3.272 18 H -0.216 1.216 19 H -0.218 1.218 20 H -0.205 1.205 21 C 0.041 3.959 22 C -0.054 4.054 23 C -0.153 4.153 24 H 0.085 0.915 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.220 0.780 28 H 0.083 0.917 29 H 0.097 0.903 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.052 0.948 34 H 0.062 0.938 35 H 0.108 0.892 36 H 0.056 0.944 37 H 0.100 0.900 38 H 0.079 0.921 39 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -4.714 -2.110 10.148 11.387 hybrid contribution -0.617 -0.067 -1.085 1.251 sum -5.331 -2.177 9.063 10.737 Atomic orbital electron populations 1.20125 0.89137 1.02280 1.02062 1.20377 0.97313 0.92548 1.10008 1.24238 0.81002 0.99864 1.03503 1.84433 1.27970 1.21531 1.69529 1.22063 0.95991 0.80772 1.11996 1.16637 0.81387 0.86049 0.76884 1.90792 1.86005 1.13116 1.52136 1.47309 1.05583 1.07590 1.69705 1.20626 0.84906 0.95305 0.98171 1.21824 0.99582 1.01937 0.97878 1.20220 0.89794 0.90230 0.96476 1.43743 1.23953 1.57328 1.06517 1.19217 1.27262 1.05263 0.86039 0.91629 1.24870 1.01845 0.94979 0.97926 1.70017 1.40771 1.05316 1.39316 0.86343 0.79752 0.77183 0.83890 1.21582 1.21774 1.20527 1.21991 0.97129 0.91064 0.85734 1.22528 1.01549 0.79588 1.01747 1.21693 0.90674 1.00128 1.02775 0.91549 0.91681 0.91758 0.78004 0.91739 0.90279 0.92475 0.91158 0.93583 0.94795 0.93803 0.89246 0.94384 0.90001 0.92141 0.82876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.84 10.39 36.00 0.37 -0.46 16 2 C -0.20 -2.90 6.14 -104.93 -0.64 -3.55 16 3 C -0.02 -0.23 12.00 29.63 0.36 0.12 16 4 O -0.14 -2.51 6.34 4.98 0.03 -2.48 16 5 C -0.06 -1.07 6.74 -36.80 -0.25 -1.32 16 6 C 0.60 12.50 7.64 -12.86 -0.10 12.41 16 7 O -0.54 -12.19 16.33 5.19 0.08 -12.11 16 8 N -0.57 -11.03 2.45 -178.21 -0.44 -11.47 16 9 C 0.13 2.24 5.70 -5.91 -0.03 2.21 16 10 C -0.17 -3.14 5.60 -29.34 -0.16 -3.31 16 11 C 0.16 3.30 5.63 -5.45 -0.03 3.27 16 12 N -0.59 -14.59 2.54 -172.25 -0.44 -15.03 16 13 C -0.25 -6.85 9.30 -15.06 -0.14 -6.99 16 14 H 0.07 1.82 7.88 -52.49 -0.41 1.41 16 15 C 0.00 0.03 4.96 -17.43 -0.09 -0.05 16 16 N -0.91 -25.89 10.70 55.49 0.59 -25.29 16 17 Si 0.90 22.41 29.58 -169.99 -5.03 17.38 16 18 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 19 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 21 C 0.17 3.86 5.06 -1.75 -0.01 3.85 16 22 C 0.07 1.32 4.82 -4.58 -0.02 1.30 16 23 C -0.13 -2.23 10.58 -39.39 -0.42 -2.65 16 24 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.20 2.15 8.06 -52.49 -0.42 1.72 16 28 H 0.06 0.92 8.06 -51.93 -0.42 0.51 16 29 H 0.08 1.35 7.15 -51.93 -0.37 0.98 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.07 1.54 7.90 -51.93 -0.41 1.13 16 32 H 0.05 0.95 8.02 -51.93 -0.42 0.54 16 33 H 0.03 0.63 7.59 -51.93 -0.39 0.24 16 34 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 35 H 0.09 2.35 5.42 -51.93 -0.28 2.07 16 36 H 0.04 0.94 8.05 -51.93 -0.42 0.52 16 37 H 0.08 1.45 4.96 -51.93 -0.26 1.20 16 38 H 0.06 1.00 7.73 -51.93 -0.40 0.60 16 39 H 0.15 2.41 8.06 -52.49 -0.42 1.99 16 LS Contribution 313.58 15.07 4.73 4.73 Total: -1.00 -32.00 313.58 -7.09 -39.09 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -5.45 Total: 0.35 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: -1.16 Total: 4.83 kcal Atomic # 7 Polarization: -51.51 SS G_CDS: -0.28 Total: -51.80 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: 0.12 Total: -14.59 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.03 Total: 17.38 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.00 -7.09 -39.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981792753.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.148 kcal (2) G-P(sol) polarization free energy of solvation -32.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.39 seconds