Wall clock time and date at job start Tue Mar 31 2020 01:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35134 * 126.44182 * 2 1 4 4 O 1.33937 * 108.76589 * 180.02562 * 3 2 1 5 5 C 1.34915 * 109.38505 * 359.97438 * 4 3 2 6 6 C 1.46653 * 125.98636 * 179.97438 * 5 4 3 7 7 O 1.21699 * 119.99948 * 186.91542 * 6 5 4 8 8 N 1.34776 * 120.00133 * 6.91208 * 6 5 4 9 9 C 1.48212 * 119.97246 * 176.85906 * 8 6 5 10 10 C 1.47145 * 110.20002 * 102.58321 * 9 8 6 11 11 C 1.53394 * 112.04359 * 58.39607 * 10 9 8 12 12 N 1.43455 * 107.86110 * 281.53960 * 11 10 9 13 13 C 1.36940 * 118.94001 * 273.58960 * 12 11 10 14 14 H 1.07996 * 119.99936 * 21.39105 * 13 12 11 15 15 C 1.38812 * 119.99594 * 201.39501 * 13 12 11 16 16 N 1.31614 * 120.00744 * 15.49254 * 15 13 12 17 17 Si 1.86806 * 119.99682 * 195.49097 * 15 13 12 18 18 H 1.48505 * 109.46940 * 89.99907 * 17 15 13 19 19 H 1.48504 * 109.47176 * 209.99926 * 17 15 13 20 20 H 1.48497 * 109.47041 * 330.00159 * 17 15 13 21 21 C 1.48856 * 122.12190 * 93.60970 * 12 11 10 22 22 C 1.43620 * 119.96832 * 356.84156 * 8 6 5 23 23 C 1.36548 * 108.02466 * 0.22799 * 5 4 3 24 24 H 1.08997 * 109.47243 * 89.98128 * 1 2 3 25 25 H 1.09003 * 109.47020 * 209.97292 * 1 2 3 26 26 H 1.09000 * 109.47036 * 329.97756 * 1 2 3 27 27 H 1.07989 * 125.61703 * 0.02562 * 3 2 1 28 28 H 1.08999 * 109.33219 * 222.76709 * 9 8 6 29 29 H 1.08999 * 109.32396 * 342.40979 * 9 8 6 30 30 H 1.09000 * 109.00522 * 178.82004 * 10 9 8 31 31 H 1.08998 * 109.00635 * 297.60379 * 10 9 8 32 32 H 1.09003 * 109.82930 * 161.94414 * 11 10 9 33 33 H 1.09006 * 109.83448 * 41.13994 * 11 10 9 34 34 H 0.97000 * 120.00963 * 179.97438 * 16 15 13 35 35 H 1.09004 * 109.48335 * 200.64065 * 21 12 11 36 36 H 1.08999 * 109.49218 * 80.61045 * 21 12 11 37 37 H 1.08995 * 108.87621 * 31.44360 * 22 8 6 38 38 H 1.09001 * 108.87563 * 149.87800 * 22 8 6 39 39 H 1.07998 * 126.64218 * 179.77334 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0871 0.0000 4 8 3.5858 0.6804 -0.0006 5 6 3.6260 -0.6681 -0.0004 6 6 4.8379 -1.4941 -0.0014 7 8 4.7513 -2.7014 -0.1280 8 7 6.0474 -0.9161 0.1379 9 6 7.2662 -1.7567 0.2067 10 6 7.9752 -1.7303 -1.0824 11 6 8.3718 -0.3063 -1.4922 12 7 7.2053 0.3408 -2.0199 13 6 6.9042 0.1849 -3.3467 14 1 7.3021 -0.6558 -3.8955 15 6 6.0876 1.1075 -3.9860 16 7 5.8511 2.2755 -3.4275 17 14 5.3243 0.6913 -5.6395 18 1 4.0051 0.0435 -5.4266 19 1 5.1429 1.9363 -6.4284 20 1 6.2181 -0.2368 -6.3777 21 6 6.3119 1.1765 -1.1720 22 6 6.1543 0.5138 0.2190 23 6 2.3408 -1.1292 -0.0048 24 1 -0.3633 0.0003 -1.0276 25 1 -0.3633 -0.8903 0.5134 26 1 -0.3633 0.8898 0.5142 27 1 1.9770 2.1145 0.0004 28 1 7.9238 -1.3755 0.9879 29 1 6.9838 -2.7829 0.4420 30 1 8.8775 -2.3366 -1.0037 31 1 7.3297 -2.1550 -1.8513 32 1 9.1493 -0.3441 -2.2552 33 1 8.7353 0.2411 -0.6225 34 1 5.2808 2.9204 -3.8744 35 1 5.3345 1.2613 -1.6470 36 1 6.7462 2.1693 -1.0544 37 1 5.2578 0.9078 0.6978 38 1 7.0195 0.7686 0.8310 39 1 2.0267 -2.1625 -0.0093 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981792753.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:55 Heat of formation + Delta-G solvation = -0.324411 kcal Electronic energy + Delta-G solvation = -23097.869381 eV Core-core repulsion = 19814.811061 eV Total energy + Delta-G solvation = -3283.058320 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.69870 -40.97260 -38.67428 -36.10203 -35.16087 -34.31605 -32.75758 -31.44430 -29.32883 -28.26182 -27.15232 -25.50331 -24.85504 -22.53366 -21.96298 -21.48135 -20.14148 -18.78687 -18.18035 -17.74464 -17.38379 -17.17919 -16.67709 -15.95770 -15.73420 -15.47035 -14.91271 -14.60518 -14.45100 -14.17168 -14.00796 -13.91762 -13.87269 -13.66381 -13.21428 -13.09069 -12.84197 -12.58697 -12.45992 -12.32339 -12.05951 -11.77188 -11.68481 -11.47027 -11.26903 -10.67972 -10.46362 -9.77187 -9.40573 -8.69785 -7.85212 -5.24927 0.09132 1.37548 1.38299 1.41809 1.47962 1.69406 2.16299 2.23202 2.48962 3.26952 3.52483 3.73437 3.86865 4.01978 4.09569 4.19020 4.29907 4.36247 4.49375 4.56132 4.66963 4.70835 4.79277 4.87731 4.89259 5.02352 5.03971 5.06387 5.16431 5.22748 5.31382 5.46716 5.56112 5.59392 5.74055 5.77306 5.97532 6.37897 6.40665 6.99822 7.17732 7.96019 8.32578 9.18769 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.013507 B = 0.008820 C = 0.006419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.555568 B = 3173.813059 C = 4361.093512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.204 4.204 3 C -0.012 4.012 4 O -0.156 6.156 5 C -0.097 4.097 6 C 0.593 3.407 7 O -0.572 6.572 8 N -0.575 5.575 9 C 0.126 3.874 10 C -0.156 4.156 11 C 0.156 3.844 12 N -0.609 5.609 13 C -0.256 4.256 14 H 0.055 0.945 15 C -0.045 4.045 16 N -0.926 5.926 17 Si 0.948 3.052 18 H -0.297 1.297 19 H -0.288 1.288 20 H -0.275 1.275 21 C 0.176 3.824 22 C 0.084 3.916 23 C -0.132 4.132 24 H 0.069 0.931 25 H 0.074 0.926 26 H 0.089 0.911 27 H 0.242 0.758 28 H 0.105 0.895 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.026 0.974 32 H 0.039 0.961 33 H 0.060 0.940 34 H 0.248 0.752 35 H 0.054 0.946 36 H 0.019 0.981 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.312 -1.508 11.490 12.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.205 4.205 3 C -0.082 4.082 4 O -0.052 6.052 5 C -0.149 4.149 6 C 0.382 3.618 7 O -0.455 6.455 8 N -0.303 5.303 9 C 0.005 3.995 10 C -0.197 4.197 11 C 0.029 3.971 12 N -0.331 5.331 13 C -0.386 4.386 14 H 0.073 0.927 15 C -0.240 4.240 16 N -0.573 5.573 17 Si 0.778 3.222 18 H -0.224 1.224 19 H -0.214 1.214 20 H -0.200 1.200 21 C 0.050 3.950 22 C -0.041 4.041 23 C -0.153 4.153 24 H 0.088 0.912 25 H 0.093 0.907 26 H 0.108 0.892 27 H 0.258 0.742 28 H 0.123 0.877 29 H 0.097 0.903 30 H 0.111 0.889 31 H 0.045 0.955 32 H 0.057 0.943 33 H 0.078 0.922 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.037 0.963 37 H 0.111 0.889 38 H 0.109 0.891 39 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -5.082 -1.802 11.391 12.602 hybrid contribution -0.510 -0.159 -1.461 1.556 sum -5.592 -1.961 9.929 11.563 Atomic orbital electron populations 1.20236 0.86202 1.04106 1.02816 1.20815 0.99226 0.91332 1.09119 1.25126 0.79866 1.01711 1.01468 1.84375 1.29784 1.20959 1.70039 1.21948 0.96103 0.81467 1.15367 1.16984 0.82373 0.86033 0.76402 1.90748 1.86653 1.14347 1.53758 1.47460 1.05920 1.07877 1.69042 1.20838 0.84599 0.95520 0.98501 1.21628 1.00333 1.00571 0.97163 1.20419 0.88365 0.91235 0.97106 1.43974 1.25562 1.57733 1.05850 1.19382 1.27040 1.04593 0.87625 0.92735 1.25432 1.02728 0.95216 1.00634 1.70140 1.41283 1.05726 1.40157 0.85546 0.78509 0.76936 0.81209 1.22447 1.21383 1.19984 1.21725 0.94885 0.90704 0.87642 1.22314 1.03517 0.79154 0.99111 1.22011 0.90659 1.01220 1.01399 0.91195 0.90699 0.89203 0.74229 0.87714 0.90310 0.88901 0.95494 0.94268 0.92192 0.94220 0.92708 0.96261 0.88898 0.89093 0.82513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.41 10.39 71.23 0.74 -0.67 16 2 C -0.20 -5.52 6.14 -20.06 -0.12 -5.65 16 3 C -0.01 -0.34 12.00 67.10 0.81 0.46 16 4 O -0.16 -5.53 6.34 -5.10 -0.03 -5.57 16 5 C -0.10 -3.73 6.74 24.07 0.16 -3.57 16 6 C 0.59 24.83 7.64 86.44 0.66 25.50 16 7 O -0.57 -26.36 16.33 -4.34 -0.07 -26.43 16 8 N -0.57 -21.65 2.45 -835.95 -2.05 -23.71 16 9 C 0.13 4.04 5.70 84.23 0.48 4.52 16 10 C -0.16 -5.52 5.60 28.91 0.16 -5.36 16 11 C 0.16 6.18 5.63 87.07 0.49 6.67 16 12 N -0.61 -30.01 2.54 -698.87 -1.78 -31.79 16 13 C -0.26 -14.37 9.30 84.03 0.78 -13.59 16 14 H 0.05 3.11 7.88 -2.91 -0.02 3.09 16 15 C -0.04 -2.54 4.96 84.86 0.42 -2.12 16 16 N -0.93 -53.61 10.70 21.65 0.23 -53.37 16 17 Si 0.95 46.76 29.58 68.60 2.03 48.79 16 18 H -0.30 -14.91 7.11 99.48 0.71 -14.20 16 19 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 20 H -0.27 -13.17 7.11 99.48 0.71 -12.46 16 21 C 0.18 8.20 5.06 86.57 0.44 8.63 16 22 C 0.08 3.02 4.82 87.55 0.42 3.44 16 23 C -0.13 -4.43 10.58 22.39 0.24 -4.19 16 24 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.24 4.36 8.06 -2.92 -0.02 4.34 16 28 H 0.10 2.56 8.06 -2.39 -0.02 2.54 16 29 H 0.08 2.58 7.15 -2.39 -0.02 2.56 16 30 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 31 H 0.03 1.17 7.90 -2.39 -0.02 1.16 16 32 H 0.04 1.59 8.02 -2.39 -0.02 1.57 16 33 H 0.06 2.07 7.59 -2.38 -0.02 2.05 16 34 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 35 H 0.05 2.94 5.42 -2.38 -0.01 2.92 16 36 H 0.02 0.96 8.05 -2.39 -0.02 0.94 16 37 H 0.09 3.20 4.96 -2.39 -0.01 3.19 16 38 H 0.09 2.74 7.73 -2.39 -0.02 2.72 16 39 H 0.16 4.97 8.06 -2.91 -0.02 4.95 16 Total: -1.00 -71.41 313.58 5.05 -66.36 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: 1.05 Total: 11.64 kcal Atomic # 6 Polarization: 8.40 SS G_CDS: 5.68 Total: 14.08 kcal Atomic # 7 Polarization: -105.27 SS G_CDS: -3.60 Total: -108.87 kcal Atomic # 8 Polarization: -31.90 SS G_CDS: -0.10 Total: -32.00 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Total: -71.41 5.05 -66.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981792753.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.034 kcal (2) G-P(sol) polarization free energy of solvation -71.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds