Wall clock time and date at job start Tue Mar 31 2020 00:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.33661 * 125.80321 * 2 1 4 4 C 1.34214 * 110.90699 * 180.28718 * 3 2 1 5 5 C 1.34177 * 109.12700 * 359.73291 * 4 3 2 6 6 C 1.36418 * 125.80213 * 179.81849 * 2 1 3 7 7 C 1.47382 * 127.19174 * 359.97438 * 6 2 1 8 8 O 1.21616 * 119.99886 * 31.68575 * 7 6 2 9 9 N 1.34769 * 119.99727 * 211.68919 * 7 6 2 10 10 C 1.47430 * 125.65234 * 355.84272 * 9 7 6 11 11 C 1.54913 * 104.83206 * 155.83589 * 10 9 7 12 12 C 1.55155 * 101.61458 * 36.99143 * 11 10 9 13 13 H 1.09004 * 110.71724 * 82.88416 * 12 11 10 14 14 N 1.46509 * 110.71725 * 206.15032 * 12 11 10 15 15 C 1.36939 * 119.99926 * 273.54746 * 14 12 11 16 16 H 1.07998 * 119.99868 * 0.02562 * 15 14 12 17 17 C 1.38804 * 119.99725 * 179.97438 * 15 14 12 18 18 N 1.31627 * 119.99928 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00139 * 180.02562 * 17 15 14 20 20 H 1.48490 * 109.47186 * 59.99905 * 19 17 15 21 21 H 1.48495 * 109.47376 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.46703 * 300.00093 * 19 17 15 23 23 C 1.47027 * 125.64897 * 175.80484 * 9 7 6 24 24 H 1.08995 * 109.87933 * 61.51803 * 23 9 7 25 25 C 1.53008 * 109.87943 * 300.51332 * 23 9 7 26 26 H 1.08999 * 109.47032 * 270.18148 * 1 2 3 27 27 H 1.09001 * 109.47374 * 30.18464 * 1 2 3 28 28 H 1.08999 * 109.47226 * 150.18310 * 1 2 3 29 29 H 1.07996 * 125.43206 * 179.72531 * 4 3 2 30 30 H 1.07996 * 127.02264 * 180.02562 * 5 4 3 31 31 H 1.09005 * 110.36299 * 37.00262 * 10 9 7 32 32 H 1.08988 * 110.36717 * 274.67683 * 10 9 7 33 33 H 1.08999 * 111.00268 * 155.08951 * 11 10 9 34 34 H 1.09007 * 111.00491 * 278.90060 * 11 10 9 35 35 H 0.97001 * 119.99413 * 93.54946 * 14 12 11 36 36 H 0.97005 * 119.99641 * 179.97438 * 18 17 15 37 37 H 1.08997 * 109.47184 * 61.45102 * 25 23 9 38 38 H 1.08996 * 109.46743 * 181.45579 * 25 23 9 39 39 H 1.09004 * 109.46771 * 301.45068 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2889 1.0840 0.0000 4 6 3.5859 0.7390 -0.0063 5 6 3.6849 -0.5991 -0.0047 6 6 2.3050 -1.1064 0.0035 7 6 1.8740 -2.5158 0.0085 8 8 0.8389 -2.8370 -0.5433 9 7 2.6269 -3.4485 0.6245 10 6 3.9393 -3.2148 1.2541 11 6 4.0816 -4.3439 2.3051 12 6 3.4181 -5.5392 1.5714 13 1 4.1260 -6.0171 0.8942 14 7 2.8851 -6.5068 2.5337 15 6 3.6951 -7.4902 3.0359 16 1 4.7268 -7.5521 2.7229 17 6 3.1902 -8.4066 3.9480 18 7 1.9328 -8.3308 4.3297 19 14 4.2952 -9.7476 4.6337 20 1 5.4422 -9.1283 5.3449 21 1 3.5217 -10.5904 5.5805 22 1 4.7999 -10.5905 3.5201 23 6 2.2750 -4.8674 0.7808 24 1 2.1740 -5.3343 -0.1989 25 6 0.9621 -4.9956 1.5560 26 1 -0.3633 0.0033 1.0277 27 1 -0.3634 0.8883 -0.5167 28 1 -0.3633 -0.8916 -0.5110 29 1 4.4172 1.4285 -0.0119 30 1 4.5928 -1.1840 -0.0082 31 1 3.9586 -2.2394 1.7403 32 1 4.7341 -3.2853 0.5117 33 1 5.1307 -4.5497 2.5179 34 1 3.5408 -4.0975 3.2190 35 1 1.9584 -6.4509 2.8149 36 1 1.5799 -8.9715 4.9669 37 1 0.1621 -4.5081 0.9988 38 1 0.7210 -6.0500 1.6903 39 1 1.0679 -4.5200 2.5310 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985937842.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:24:36 Heat of formation + Delta-G solvation = 1.616053 kcal Electronic energy + Delta-G solvation = -21943.991768 eV Core-core repulsion = 18661.017593 eV Total energy + Delta-G solvation = -3282.974175 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.65892 -39.79947 -37.40424 -34.23845 -33.15033 -32.07110 -31.42299 -30.68490 -28.95223 -26.92513 -25.23362 -24.04262 -23.22296 -21.86811 -21.23494 -19.18531 -18.68338 -17.63511 -17.27613 -16.47061 -16.05252 -15.47965 -15.41994 -14.56149 -14.24996 -13.96492 -13.66250 -13.31953 -13.25744 -13.09368 -12.98063 -12.72246 -12.43984 -12.03520 -11.84926 -11.73410 -11.46984 -11.20659 -10.98192 -10.81062 -10.46337 -10.24173 -10.03184 -9.84803 -9.73260 -9.57275 -8.94424 -8.70664 -8.33305 -7.02658 -5.81853 -3.11723 1.37459 1.98892 2.69090 3.14251 3.38679 3.41435 3.46430 3.47197 4.40878 4.55019 4.65194 4.80733 5.06097 5.09762 5.25368 5.35970 5.39128 5.42925 5.50334 5.58267 5.61223 5.65702 5.72126 5.83747 6.02744 6.06317 6.11960 6.18274 6.23278 6.34176 6.56408 6.57276 6.72467 6.82615 6.93582 6.99517 7.65446 7.79491 8.36120 8.39076 9.48287 10.03364 10.38544 11.40605 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.035591 B = 0.003948 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.535892 B = 7089.715305 C = 7544.989413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.065 3.935 3 O -0.178 6.178 4 C -0.044 4.044 5 C -0.186 4.186 6 C -0.233 4.233 7 C 0.603 3.397 8 O -0.544 6.544 9 N -0.600 5.600 10 C 0.097 3.903 11 C -0.154 4.154 12 C 0.174 3.826 13 H 0.063 0.937 14 N -0.717 5.717 15 C -0.245 4.245 16 H 0.071 0.929 17 C -0.010 4.010 18 N -0.932 5.932 19 Si 0.909 3.091 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.285 1.285 23 C 0.129 3.871 24 H 0.072 0.928 25 C -0.158 4.158 26 H 0.085 0.915 27 H 0.078 0.922 28 H 0.109 0.891 29 H 0.207 0.793 30 H 0.158 0.842 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.391 0.609 36 H 0.257 0.743 37 H 0.059 0.941 38 H 0.080 0.920 39 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.634 18.059 -7.969 19.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.013 3.987 3 O -0.075 6.075 4 C -0.110 4.110 5 C -0.205 4.205 6 C -0.237 4.237 7 C 0.392 3.608 8 O -0.424 6.424 9 N -0.333 5.333 10 C -0.026 4.026 11 C -0.196 4.196 12 C 0.062 3.938 13 H 0.081 0.919 14 N -0.361 5.361 15 C -0.376 4.376 16 H 0.089 0.911 17 C -0.206 4.206 18 N -0.579 5.579 19 Si 0.740 3.260 20 H -0.212 1.212 21 H -0.217 1.217 22 H -0.212 1.212 23 C 0.026 3.974 24 H 0.091 0.909 25 C -0.216 4.216 26 H 0.104 0.896 27 H 0.097 0.903 28 H 0.128 0.872 29 H 0.223 0.777 30 H 0.176 0.824 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.229 0.771 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.099 0.901 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.044 18.055 -8.228 19.947 hybrid contribution 0.793 -0.810 0.617 1.290 sum 2.837 17.246 -7.611 19.063 Atomic orbital electron populations 1.20603 0.83999 1.05353 1.04212 1.22699 0.93982 0.83040 0.99012 1.83743 1.17128 1.34978 1.71617 1.23824 0.83544 0.96351 1.07290 1.23011 0.96821 0.94351 1.06308 1.21159 0.93443 0.93900 1.15199 1.16816 0.82843 0.83135 0.78012 1.90737 1.24693 1.81454 1.45518 1.48381 1.20311 1.09445 1.55119 1.22509 0.84405 1.00086 0.95603 1.23568 1.02143 0.95801 0.98046 1.21183 0.92264 0.89282 0.91075 0.91920 1.42668 1.12650 1.31764 1.49011 1.19196 0.93630 1.05257 1.19542 0.91117 1.24747 0.96262 0.99543 1.00061 1.69654 1.13124 1.38671 1.36478 0.86249 0.79475 0.81743 0.78579 1.21238 1.21684 1.21207 1.21842 0.96719 0.79467 0.99379 0.90949 1.22002 0.96445 1.03282 0.99900 0.89618 0.90275 0.87220 0.77692 0.82418 0.90957 0.91816 0.90614 0.90679 0.77078 0.93321 0.92238 0.90124 0.92499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.89 10.20 36.01 0.37 -0.52 16 2 C 0.07 0.82 7.37 -34.96 -0.26 0.56 16 3 O -0.18 -2.01 10.52 7.63 0.08 -1.93 16 4 C -0.04 -0.41 12.03 29.30 0.35 -0.06 16 5 C -0.19 -2.04 9.12 -37.45 -0.34 -2.38 16 6 C -0.23 -3.26 5.83 -103.27 -0.60 -3.86 16 7 C 0.60 10.08 7.44 -12.54 -0.09 9.98 16 8 O -0.54 -10.38 14.38 5.26 0.08 -10.31 16 9 N -0.60 -9.75 3.08 -164.26 -0.51 -10.26 16 10 C 0.10 1.34 5.39 -2.52 -0.01 1.32 16 11 C -0.15 -2.56 6.77 -24.58 -0.17 -2.73 16 12 C 0.17 3.37 3.46 -66.07 -0.23 3.14 16 13 H 0.06 1.21 8.12 -51.93 -0.42 0.78 16 14 N -0.72 -17.37 5.02 -51.63 -0.26 -17.63 16 15 C -0.25 -6.57 9.98 -15.06 -0.15 -6.72 16 16 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 17 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 18 N -0.93 -27.53 13.06 55.49 0.72 -26.81 16 19 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16 20 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 C 0.13 2.35 3.46 -66.93 -0.23 2.12 16 24 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 25 C -0.16 -3.01 7.94 37.16 0.30 -2.71 16 26 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.11 1.32 6.48 -51.93 -0.34 0.99 16 29 H 0.21 1.01 8.06 -52.49 -0.42 0.59 16 30 H 0.16 1.45 6.63 -52.49 -0.35 1.11 16 31 H 0.07 0.90 6.50 -51.93 -0.34 0.56 16 32 H 0.06 0.76 7.77 -51.94 -0.40 0.35 16 33 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.07 1.37 8.14 -51.92 -0.42 0.95 16 35 H 0.39 10.01 4.93 -40.82 -0.20 9.80 16 36 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 37 H 0.06 1.12 6.87 -51.93 -0.36 0.76 16 38 H 0.08 1.66 6.72 -51.93 -0.35 1.31 16 39 H 0.06 1.11 8.06 -51.93 -0.42 0.69 16 LS Contribution 318.42 15.07 4.80 4.80 Total: -1.00 -31.79 318.42 -6.53 -38.32 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -5.26 Total: 9.19 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: -1.17 Total: -2.23 kcal Atomic # 7 Polarization: -54.65 SS G_CDS: -0.04 Total: -54.69 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: 0.16 Total: -12.24 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.79 -6.53 -38.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985937842.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.936 kcal (2) G-P(sol) polarization free energy of solvation -31.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds