Wall clock time and date at job start Tue Mar 31 2020 00:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.33661 * 125.80321 * 2 1 4 4 C 1.34214 * 110.90699 * 180.28718 * 3 2 1 5 5 C 1.34177 * 109.12700 * 359.73291 * 4 3 2 6 6 C 1.36418 * 125.80213 * 179.81849 * 2 1 3 7 7 C 1.47382 * 127.19174 * 359.97438 * 6 2 1 8 8 O 1.21616 * 119.99886 * 31.68575 * 7 6 2 9 9 N 1.34769 * 119.99727 * 211.68919 * 7 6 2 10 10 C 1.47430 * 125.65234 * 355.84272 * 9 7 6 11 11 C 1.54913 * 104.83206 * 155.83589 * 10 9 7 12 12 C 1.55155 * 101.61458 * 36.99143 * 11 10 9 13 13 H 1.09004 * 110.71724 * 82.88416 * 12 11 10 14 14 N 1.46509 * 110.71725 * 206.15032 * 12 11 10 15 15 C 1.36939 * 119.99926 * 273.54746 * 14 12 11 16 16 H 1.07998 * 119.99868 * 0.02562 * 15 14 12 17 17 C 1.38804 * 119.99725 * 179.97438 * 15 14 12 18 18 N 1.31627 * 119.99928 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00139 * 180.02562 * 17 15 14 20 20 H 1.48490 * 109.47186 * 59.99905 * 19 17 15 21 21 H 1.48495 * 109.47376 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.46703 * 300.00093 * 19 17 15 23 23 C 1.47027 * 125.64897 * 175.80484 * 9 7 6 24 24 H 1.08995 * 109.87933 * 61.51803 * 23 9 7 25 25 C 1.53008 * 109.87943 * 300.51332 * 23 9 7 26 26 H 1.08999 * 109.47032 * 270.18148 * 1 2 3 27 27 H 1.09001 * 109.47374 * 30.18464 * 1 2 3 28 28 H 1.08999 * 109.47226 * 150.18310 * 1 2 3 29 29 H 1.07996 * 125.43206 * 179.72531 * 4 3 2 30 30 H 1.07996 * 127.02264 * 180.02562 * 5 4 3 31 31 H 1.09005 * 110.36299 * 37.00262 * 10 9 7 32 32 H 1.08988 * 110.36717 * 274.67683 * 10 9 7 33 33 H 1.08999 * 111.00268 * 155.08951 * 11 10 9 34 34 H 1.09007 * 111.00491 * 278.90060 * 11 10 9 35 35 H 0.97001 * 119.99413 * 93.54946 * 14 12 11 36 36 H 0.97005 * 119.99641 * 179.97438 * 18 17 15 37 37 H 1.08997 * 109.47184 * 61.45102 * 25 23 9 38 38 H 1.08996 * 109.46743 * 181.45579 * 25 23 9 39 39 H 1.09004 * 109.46771 * 301.45068 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2889 1.0840 0.0000 4 6 3.5859 0.7390 -0.0063 5 6 3.6849 -0.5991 -0.0047 6 6 2.3050 -1.1064 0.0035 7 6 1.8740 -2.5158 0.0085 8 8 0.8389 -2.8370 -0.5433 9 7 2.6269 -3.4485 0.6245 10 6 3.9393 -3.2148 1.2541 11 6 4.0816 -4.3439 2.3051 12 6 3.4181 -5.5392 1.5714 13 1 4.1260 -6.0171 0.8942 14 7 2.8851 -6.5068 2.5337 15 6 3.6951 -7.4902 3.0359 16 1 4.7268 -7.5521 2.7229 17 6 3.1902 -8.4066 3.9480 18 7 1.9328 -8.3308 4.3297 19 14 4.2952 -9.7476 4.6337 20 1 5.4422 -9.1283 5.3449 21 1 3.5217 -10.5904 5.5805 22 1 4.7999 -10.5905 3.5201 23 6 2.2750 -4.8674 0.7808 24 1 2.1740 -5.3343 -0.1989 25 6 0.9621 -4.9956 1.5560 26 1 -0.3633 0.0033 1.0277 27 1 -0.3634 0.8883 -0.5167 28 1 -0.3633 -0.8916 -0.5110 29 1 4.4172 1.4285 -0.0119 30 1 4.5928 -1.1840 -0.0082 31 1 3.9586 -2.2394 1.7403 32 1 4.7341 -3.2853 0.5117 33 1 5.1307 -4.5497 2.5179 34 1 3.5408 -4.0975 3.2190 35 1 1.9584 -6.4509 2.8149 36 1 1.5799 -8.9715 4.9669 37 1 0.1621 -4.5081 0.9988 38 1 0.7210 -6.0500 1.6903 39 1 1.0679 -4.5200 2.5310 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985937842.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:24:34 Heat of formation + Delta-G solvation = -18.798661 kcal Electronic energy + Delta-G solvation = -21944.877016 eV Core-core repulsion = 18661.017593 eV Total energy + Delta-G solvation = -3283.859424 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -43.51596 -41.14688 -38.82818 -35.95882 -34.25186 -33.28153 -32.72933 -32.10736 -30.62627 -27.84546 -26.82083 -25.61286 -24.68796 -23.00952 -22.26747 -20.53505 -19.82636 -19.43172 -18.53801 -17.42304 -17.16614 -16.92412 -16.63656 -16.27589 -15.73406 -15.34229 -15.04361 -14.69749 -14.46747 -13.99996 -13.95243 -13.83735 -13.80348 -13.53755 -13.17804 -13.02286 -12.90390 -12.83230 -12.69047 -12.50923 -12.11939 -12.05670 -11.59875 -11.56185 -11.01552 -10.91721 -10.71253 -9.76254 -9.45324 -9.00891 -7.92639 -5.22038 0.39731 1.17710 1.50395 1.53094 1.58968 1.75787 2.01743 2.21033 2.59045 3.36818 3.50401 3.66605 3.74769 3.87336 3.94212 3.99023 4.17468 4.33359 4.35212 4.38582 4.54171 4.58470 4.60391 4.67204 4.73267 4.76659 4.85163 4.90253 5.03548 5.18182 5.19963 5.24021 5.31259 5.41811 5.49427 5.55417 6.07734 6.28685 6.53317 7.10177 7.36137 8.09079 8.33294 9.30929 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.035591 B = 0.003948 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.535892 B = 7089.715305 C = 7544.989413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.060 3.940 3 O -0.180 6.180 4 C -0.026 4.026 5 C -0.199 4.199 6 C -0.263 4.263 7 C 0.598 3.402 8 O -0.579 6.579 9 N -0.601 5.601 10 C 0.106 3.894 11 C -0.144 4.144 12 C 0.167 3.833 13 H 0.069 0.931 14 N -0.732 5.732 15 C -0.241 4.241 16 H 0.082 0.918 17 C -0.074 4.074 18 N -0.971 5.971 19 Si 0.974 3.026 20 H -0.276 1.276 21 H -0.300 1.300 22 H -0.278 1.278 23 C 0.135 3.865 24 H 0.066 0.934 25 C -0.143 4.143 26 H 0.094 0.906 27 H 0.103 0.897 28 H 0.088 0.912 29 H 0.252 0.748 30 H 0.176 0.824 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.054 0.946 35 H 0.381 0.619 36 H 0.250 0.750 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.104 20.188 -8.505 22.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.007 3.993 3 O -0.076 6.076 4 C -0.091 4.091 5 C -0.218 4.218 6 C -0.268 4.268 7 C 0.390 3.610 8 O -0.461 6.461 9 N -0.334 5.334 10 C -0.016 4.016 11 C -0.185 4.185 12 C 0.057 3.943 13 H 0.087 0.913 14 N -0.375 5.375 15 C -0.373 4.373 16 H 0.100 0.900 17 C -0.266 4.266 18 N -0.622 5.622 19 Si 0.803 3.197 20 H -0.202 1.202 21 H -0.227 1.227 22 H -0.204 1.204 23 C 0.031 3.969 24 H 0.084 0.916 25 C -0.202 4.202 26 H 0.112 0.888 27 H 0.122 0.878 28 H 0.106 0.894 29 H 0.268 0.732 30 H 0.194 0.806 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.109 0.891 34 H 0.073 0.927 35 H 0.217 0.783 36 H 0.059 0.941 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.573 20.231 -8.793 22.528 hybrid contribution 0.033 -1.367 0.704 1.538 sum 4.605 18.865 -8.088 21.036 Atomic orbital electron populations 1.20615 0.83276 1.05474 1.04802 1.22951 0.94760 0.83140 0.98412 1.83779 1.18083 1.34387 1.71330 1.24712 0.83460 0.96637 1.04266 1.23225 0.95908 0.95253 1.07444 1.21124 0.95711 0.92399 1.17550 1.17284 0.82265 0.84262 0.77236 1.90712 1.26172 1.82208 1.46984 1.48393 1.21309 1.08344 1.55313 1.22627 0.83815 0.99775 0.95374 1.23378 1.02226 0.95253 0.97669 1.21376 0.92752 0.89470 0.90721 0.91340 1.42843 1.12167 1.32567 1.49940 1.19628 0.94202 1.05040 1.18402 0.90022 1.25548 0.97554 1.02207 1.01296 1.69824 1.14999 1.39719 1.37648 0.85208 0.77761 0.79000 0.77752 1.20170 1.22651 1.20449 1.21600 0.95698 0.81068 0.98556 0.91573 1.21816 0.97239 1.01627 0.99492 0.88776 0.87807 0.89370 0.73184 0.80618 0.88905 0.88823 0.89089 0.92735 0.78332 0.94089 0.92430 0.92195 0.93425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.71 10.20 71.24 0.73 -0.98 16 2 C 0.06 1.42 7.37 25.26 0.19 1.60 16 3 O -0.18 -3.50 10.52 4.40 0.05 -3.46 16 4 C -0.03 -0.37 12.03 66.89 0.80 0.44 16 5 C -0.20 -3.69 9.12 23.65 0.22 -3.47 16 6 C -0.26 -6.95 5.83 -18.99 -0.11 -7.06 16 7 C 0.60 19.76 7.44 86.65 0.65 20.40 16 8 O -0.58 -22.55 14.38 -4.08 -0.06 -22.61 16 9 N -0.60 -19.00 3.08 -791.84 -2.44 -21.44 16 10 C 0.11 2.63 5.39 86.86 0.47 3.10 16 11 C -0.14 -4.55 6.77 31.99 0.22 -4.33 16 12 C 0.17 6.37 3.46 46.19 0.16 6.53 16 13 H 0.07 2.55 8.12 -2.39 -0.02 2.53 16 14 N -0.73 -35.93 5.02 -317.25 -1.59 -37.53 16 15 C -0.24 -12.90 9.98 84.03 0.84 -12.06 16 16 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 17 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 18 N -0.97 -58.93 13.06 21.65 0.28 -58.65 16 19 Si 0.97 45.17 29.55 68.60 2.03 47.20 16 20 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 21 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 22 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 23 C 0.14 4.94 3.46 45.36 0.16 5.10 16 24 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 25 C -0.14 -5.69 7.94 71.98 0.57 -5.12 16 26 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.09 2.18 6.48 -2.39 -0.02 2.16 16 29 H 0.25 0.99 8.06 -2.91 -0.02 0.97 16 30 H 0.18 2.47 6.63 -2.91 -0.02 2.45 16 31 H 0.09 2.00 6.50 -2.38 -0.02 1.98 16 32 H 0.09 1.83 7.77 -2.39 -0.02 1.82 16 33 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 34 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 35 H 0.38 20.16 4.93 -92.71 -0.46 19.71 16 36 H 0.25 14.84 8.31 -92.70 -0.77 14.07 16 37 H 0.06 2.27 6.87 -2.39 -0.02 2.25 16 38 H 0.06 2.61 6.72 -2.39 -0.02 2.59 16 39 H 0.05 1.93 8.06 -2.39 -0.02 1.91 16 Total: -1.00 -70.36 318.42 4.22 -66.14 By element: Atomic # 1 Polarization: 29.26 SS G_CDS: 0.61 Total: 29.87 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: 5.35 Total: 0.46 kcal Atomic # 7 Polarization: -113.86 SS G_CDS: -3.75 Total: -117.61 kcal Atomic # 8 Polarization: -26.05 SS G_CDS: -0.01 Total: -26.06 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -70.36 4.22 -66.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985937842.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.344 kcal (2) G-P(sol) polarization free energy of solvation -70.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds