Wall clock time and date at job start Tue Mar 31 2020 00:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.33656 * 125.79974 * 2 1 4 4 C 1.34208 * 110.90838 * 180.28507 * 3 2 1 5 5 C 1.34180 * 109.12699 * 359.72789 * 4 3 2 6 6 C 1.36407 * 125.80201 * 179.81246 * 2 1 3 7 7 C 1.47377 * 127.19541 * 359.97438 * 6 2 1 8 8 O 1.21619 * 119.99714 * 7.32894 * 7 6 2 9 9 N 1.34776 * 120.00372 * 187.33312 * 7 6 2 10 10 C 1.47427 * 125.64609 * 357.90410 * 9 7 6 11 11 C 1.54910 * 104.82956 * 155.92019 * 10 9 7 12 12 C 1.55155 * 101.58210 * 37.00891 * 11 10 9 13 13 H 1.09008 * 110.71928 * 82.86496 * 12 11 10 14 14 N 1.46506 * 110.72124 * 205.95309 * 12 11 10 15 15 C 1.36933 * 120.00123 * 271.16444 * 14 12 11 16 16 H 1.07994 * 120.00045 * 359.97438 * 15 14 12 17 17 C 1.38819 * 119.99698 * 179.97438 * 15 14 12 18 18 N 1.31615 * 120.00041 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99739 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47001 * 89.99953 * 19 17 15 21 21 H 1.48499 * 109.46878 * 209.99679 * 19 17 15 22 22 H 1.48498 * 109.47213 * 329.99825 * 19 17 15 23 23 C 1.47025 * 125.64990 * 177.96348 * 9 7 6 24 24 H 1.09004 * 109.87489 * 300.42540 * 23 9 7 25 25 C 1.52999 * 109.88500 * 61.59022 * 23 9 7 26 26 H 1.08992 * 109.47387 * 270.18664 * 1 2 3 27 27 H 1.09005 * 109.47000 * 30.19034 * 1 2 3 28 28 H 1.09006 * 109.46924 * 150.18335 * 1 2 3 29 29 H 1.08002 * 125.44055 * 179.72197 * 4 3 2 30 30 H 1.08001 * 127.03134 * 179.97438 * 5 4 3 31 31 H 1.08993 * 110.36947 * 37.08008 * 10 9 7 32 32 H 1.08998 * 110.45795 * 274.80458 * 10 9 7 33 33 H 1.09000 * 111.00530 * 278.93135 * 11 10 9 34 34 H 1.09005 * 110.99890 * 155.08138 * 11 10 9 35 35 H 0.97001 * 119.99656 * 91.15697 * 14 12 11 36 36 H 0.97005 * 120.00155 * 179.97438 * 18 17 15 37 37 H 1.08999 * 109.46759 * 177.81071 * 25 23 9 38 38 H 1.08995 * 109.47154 * 297.81494 * 25 23 9 39 39 H 1.08999 * 109.46732 * 57.80991 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2888 1.0840 0.0000 4 6 3.5858 0.7392 -0.0062 5 6 3.6849 -0.5990 -0.0045 6 6 2.3050 -1.1063 0.0036 7 6 1.8740 -2.5157 0.0088 8 8 0.6971 -2.7921 -0.1242 9 7 2.7840 -3.4981 0.1609 10 6 4.2405 -3.3081 0.2876 11 6 4.7414 -4.5696 1.0342 12 6 3.8307 -5.6711 0.4304 13 1 4.2279 -6.0202 -0.5228 14 7 3.6779 -6.7879 1.3662 15 6 4.5716 -7.8252 1.3461 16 1 5.3888 -7.8203 0.6401 17 6 4.4271 -8.8832 2.2332 18 7 3.4314 -8.8889 3.0940 19 14 5.6458 -10.2986 2.2053 20 1 6.7699 -10.0021 3.1292 21 1 4.9656 -11.5459 2.6375 22 1 6.1705 -10.4729 0.8271 23 6 2.4887 -4.9369 0.2267 24 1 1.8235 -5.1407 1.0658 25 6 1.8381 -5.3949 -1.0801 26 1 -0.3634 0.0033 1.0276 27 1 -0.3633 0.8883 -0.5168 28 1 -0.3633 -0.8917 -0.5110 29 1 4.4171 1.4286 -0.0119 30 1 4.5928 -1.1840 -0.0087 31 1 4.4570 -2.4121 0.8692 32 1 4.7031 -3.2413 -0.6971 33 1 4.5825 -4.4767 2.1085 34 1 5.7905 -4.7645 0.8114 35 1 2.9438 -6.7925 2.0002 36 1 3.3302 -9.6283 3.7137 37 1 1.6577 -6.4691 -1.0391 38 1 0.8914 -4.8725 -1.2172 39 1 2.5017 -5.1695 -1.9149 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985937845.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:24:43 Heat of formation + Delta-G solvation = 2.468182 kcal Electronic energy + Delta-G solvation = -21829.495306 eV Core-core repulsion = 18546.558082 eV Total energy + Delta-G solvation = -3282.937224 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -42.67675 -39.77266 -37.34479 -34.21912 -33.22142 -32.08630 -31.34701 -30.83089 -29.15945 -26.93235 -25.29563 -23.82416 -23.23908 -21.75048 -21.17341 -19.80294 -18.80541 -17.31322 -17.17933 -16.49881 -16.17560 -15.73160 -15.14337 -14.60368 -14.10735 -13.74612 -13.65378 -13.46710 -13.21803 -13.06900 -13.04500 -12.78197 -12.60968 -12.11518 -11.86490 -11.79546 -11.39261 -11.08517 -11.02576 -10.82126 -10.58097 -10.26063 -10.04718 -9.85170 -9.77610 -9.60219 -8.94712 -8.74204 -8.30649 -7.03753 -5.82231 -3.12649 1.32766 1.96107 2.68865 3.21327 3.40525 3.45762 3.47179 3.47766 4.40345 4.54207 4.65288 4.77308 5.03758 5.08229 5.25367 5.32453 5.38774 5.43689 5.48947 5.51442 5.61018 5.67360 5.75631 5.81182 5.96870 6.04492 6.11469 6.13559 6.18679 6.31013 6.47229 6.59086 6.63369 6.75458 6.92647 6.93199 7.64953 7.80114 8.34695 8.40093 9.46587 10.01189 10.36078 11.39983 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.034705 B = 0.003862 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.611933 B = 7247.700565 C = 7661.615208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.071 3.929 3 O -0.179 6.179 4 C -0.045 4.045 5 C -0.197 4.197 6 C -0.236 4.236 7 C 0.601 3.399 8 O -0.546 6.546 9 N -0.599 5.599 10 C 0.088 3.912 11 C -0.157 4.157 12 C 0.176 3.824 13 H 0.066 0.934 14 N -0.714 5.714 15 C -0.244 4.244 16 H 0.072 0.928 17 C -0.010 4.010 18 N -0.930 5.930 19 Si 0.908 3.092 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.281 1.281 23 C 0.128 3.872 24 H 0.078 0.922 25 C -0.154 4.154 26 H 0.086 0.914 27 H 0.075 0.925 28 H 0.111 0.889 29 H 0.206 0.794 30 H 0.169 0.831 31 H 0.080 0.920 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.386 0.614 36 H 0.256 0.744 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.050 19.171 -7.209 20.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.018 3.982 3 O -0.075 6.075 4 C -0.111 4.111 5 C -0.216 4.216 6 C -0.240 4.240 7 C 0.391 3.609 8 O -0.427 6.427 9 N -0.332 5.332 10 C -0.035 4.035 11 C -0.199 4.199 12 C 0.064 3.936 13 H 0.084 0.916 14 N -0.355 5.355 15 C -0.375 4.375 16 H 0.090 0.910 17 C -0.206 4.206 18 N -0.577 5.577 19 Si 0.739 3.261 20 H -0.217 1.217 21 H -0.217 1.217 22 H -0.207 1.207 23 C 0.025 3.975 24 H 0.096 0.904 25 C -0.212 4.212 26 H 0.105 0.895 27 H 0.094 0.906 28 H 0.130 0.870 29 H 0.223 0.777 30 H 0.186 0.814 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.220 0.780 36 H 0.066 0.934 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.700 19.186 -7.311 20.544 hybrid contribution 0.908 -0.879 0.350 1.311 sum 0.208 18.307 -6.961 19.587 Atomic orbital electron populations 1.20623 0.83809 1.05132 1.04334 1.22783 0.94072 0.83062 0.98241 1.83743 1.17213 1.35054 1.71518 1.23882 0.83498 0.96470 1.07252 1.23482 0.97414 0.94482 1.06182 1.21168 0.93303 0.93888 1.15634 1.16794 0.84541 0.83004 0.76540 1.90719 1.16735 1.83593 1.51623 1.48283 1.07262 1.06649 1.70985 1.22793 0.80448 1.00111 1.00134 1.23601 1.00930 0.94623 1.00717 1.21242 0.90456 0.87735 0.94122 0.91622 1.42342 1.33492 1.19800 1.39823 1.19208 1.05505 0.97598 1.15191 0.90990 1.24762 0.98450 0.98818 0.98575 1.69665 1.31744 1.32942 1.23390 0.86181 0.80345 0.82046 0.77536 1.21674 1.21739 1.20684 1.21929 0.98689 0.78309 0.98617 0.90421 1.22046 1.00917 1.01976 0.96265 0.89504 0.90568 0.87037 0.77696 0.81383 0.90220 0.91698 0.90633 0.90566 0.77987 0.93364 0.91147 0.91861 0.93170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.86 9.97 36.01 0.36 -0.50 16 2 C 0.07 0.89 7.37 -34.97 -0.26 0.64 16 3 O -0.18 -2.02 10.52 7.66 0.08 -1.94 16 4 C -0.05 -0.42 12.03 29.30 0.35 -0.07 16 5 C -0.20 -2.17 9.31 -37.45 -0.35 -2.52 16 6 C -0.24 -3.31 6.22 -103.28 -0.64 -3.95 16 7 C 0.60 10.06 7.64 -12.54 -0.10 9.97 16 8 O -0.55 -10.29 13.80 5.26 0.07 -10.22 16 9 N -0.60 -9.75 3.07 -164.29 -0.50 -10.26 16 10 C 0.09 1.20 5.36 -2.53 -0.01 1.19 16 11 C -0.16 -2.59 6.77 -24.58 -0.17 -2.75 16 12 C 0.18 3.40 3.12 -66.10 -0.21 3.19 16 13 H 0.07 1.27 7.82 -51.92 -0.41 0.86 16 14 N -0.71 -17.36 5.24 -51.65 -0.27 -17.63 16 15 C -0.24 -6.53 9.97 -15.06 -0.15 -6.68 16 16 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 17 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 18 N -0.93 -27.62 13.06 55.49 0.72 -26.90 16 19 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 C 0.13 2.32 3.23 -66.95 -0.22 2.11 16 24 H 0.08 1.58 7.71 -51.93 -0.40 1.18 16 25 C -0.15 -2.64 9.09 37.16 0.34 -2.30 16 26 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.11 1.34 6.37 -51.93 -0.33 1.01 16 29 H 0.21 1.02 8.06 -52.49 -0.42 0.60 16 30 H 0.17 1.56 5.14 -52.49 -0.27 1.30 16 31 H 0.08 0.95 5.14 -51.93 -0.27 0.68 16 32 H 0.06 0.78 8.10 -51.93 -0.42 0.36 16 33 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.39 10.14 7.55 -40.82 -0.31 9.83 16 36 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 37 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 38 H 0.06 1.11 6.83 -51.93 -0.35 0.76 16 39 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 319.82 15.07 4.82 4.82 Total: -1.00 -31.73 319.82 -6.51 -38.24 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -5.26 Total: 9.09 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: -1.14 Total: -2.05 kcal Atomic # 7 Polarization: -54.74 SS G_CDS: -0.05 Total: -54.79 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: 0.15 Total: -12.16 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.73 -6.51 -38.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985937845.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.706 kcal (2) G-P(sol) polarization free energy of solvation -31.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds