Wall clock time and date at job start Tue Mar 31 2020 00:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.33656 * 125.79974 * 2 1 4 4 C 1.34208 * 110.90838 * 180.28507 * 3 2 1 5 5 C 1.34180 * 109.12699 * 359.72789 * 4 3 2 6 6 C 1.36407 * 125.80201 * 179.81246 * 2 1 3 7 7 C 1.47377 * 127.19541 * 359.97438 * 6 2 1 8 8 O 1.21619 * 119.99714 * 7.32894 * 7 6 2 9 9 N 1.34776 * 120.00372 * 187.33312 * 7 6 2 10 10 C 1.47427 * 125.64609 * 357.90410 * 9 7 6 11 11 C 1.54910 * 104.82956 * 155.92019 * 10 9 7 12 12 C 1.55155 * 101.58210 * 37.00891 * 11 10 9 13 13 H 1.09008 * 110.71928 * 82.86496 * 12 11 10 14 14 N 1.46506 * 110.72124 * 205.95309 * 12 11 10 15 15 C 1.36933 * 120.00123 * 271.16444 * 14 12 11 16 16 H 1.07994 * 120.00045 * 359.97438 * 15 14 12 17 17 C 1.38819 * 119.99698 * 179.97438 * 15 14 12 18 18 N 1.31615 * 120.00041 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99739 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47001 * 89.99953 * 19 17 15 21 21 H 1.48499 * 109.46878 * 209.99679 * 19 17 15 22 22 H 1.48498 * 109.47213 * 329.99825 * 19 17 15 23 23 C 1.47025 * 125.64990 * 177.96348 * 9 7 6 24 24 H 1.09004 * 109.87489 * 300.42540 * 23 9 7 25 25 C 1.52999 * 109.88500 * 61.59022 * 23 9 7 26 26 H 1.08992 * 109.47387 * 270.18664 * 1 2 3 27 27 H 1.09005 * 109.47000 * 30.19034 * 1 2 3 28 28 H 1.09006 * 109.46924 * 150.18335 * 1 2 3 29 29 H 1.08002 * 125.44055 * 179.72197 * 4 3 2 30 30 H 1.08001 * 127.03134 * 179.97438 * 5 4 3 31 31 H 1.08993 * 110.36947 * 37.08008 * 10 9 7 32 32 H 1.08998 * 110.45795 * 274.80458 * 10 9 7 33 33 H 1.09000 * 111.00530 * 278.93135 * 11 10 9 34 34 H 1.09005 * 110.99890 * 155.08138 * 11 10 9 35 35 H 0.97001 * 119.99656 * 91.15697 * 14 12 11 36 36 H 0.97005 * 120.00155 * 179.97438 * 18 17 15 37 37 H 1.08999 * 109.46759 * 177.81071 * 25 23 9 38 38 H 1.08995 * 109.47154 * 297.81494 * 25 23 9 39 39 H 1.08999 * 109.46732 * 57.80991 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2888 1.0840 0.0000 4 6 3.5858 0.7392 -0.0062 5 6 3.6849 -0.5990 -0.0045 6 6 2.3050 -1.1063 0.0036 7 6 1.8740 -2.5157 0.0088 8 8 0.6971 -2.7921 -0.1242 9 7 2.7840 -3.4981 0.1609 10 6 4.2405 -3.3081 0.2876 11 6 4.7414 -4.5696 1.0342 12 6 3.8307 -5.6711 0.4304 13 1 4.2279 -6.0202 -0.5228 14 7 3.6779 -6.7879 1.3662 15 6 4.5716 -7.8252 1.3461 16 1 5.3888 -7.8203 0.6401 17 6 4.4271 -8.8832 2.2332 18 7 3.4314 -8.8889 3.0940 19 14 5.6458 -10.2986 2.2053 20 1 6.7699 -10.0021 3.1292 21 1 4.9656 -11.5459 2.6375 22 1 6.1705 -10.4729 0.8271 23 6 2.4887 -4.9369 0.2267 24 1 1.8235 -5.1407 1.0658 25 6 1.8381 -5.3949 -1.0801 26 1 -0.3634 0.0033 1.0276 27 1 -0.3633 0.8883 -0.5168 28 1 -0.3633 -0.8917 -0.5110 29 1 4.4171 1.4286 -0.0119 30 1 4.5928 -1.1840 -0.0087 31 1 4.4570 -2.4121 0.8692 32 1 4.7031 -3.2413 -0.6971 33 1 4.5825 -4.4767 2.1085 34 1 5.7905 -4.7645 0.8114 35 1 2.9438 -6.7925 2.0002 36 1 3.3302 -9.6283 3.7137 37 1 1.6577 -6.4691 -1.0391 38 1 0.8914 -4.8725 -1.2172 39 1 2.5017 -5.1695 -1.9149 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985937845.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:24:43 Heat of formation + Delta-G solvation = -18.268218 kcal Electronic energy + Delta-G solvation = -21830.394504 eV Core-core repulsion = 18546.558082 eV Total energy + Delta-G solvation = -3283.836422 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.53993 -41.09697 -38.75143 -35.96589 -34.32806 -33.26749 -32.71945 -32.15841 -30.79434 -27.84959 -26.90898 -25.15283 -24.79490 -22.86793 -22.36188 -21.22046 -19.83245 -19.18454 -18.32252 -17.62046 -17.24930 -16.90350 -16.58718 -16.15788 -15.45995 -15.37647 -14.98535 -14.67110 -14.57089 -14.16093 -14.08766 -13.88201 -13.75631 -13.58062 -13.25836 -13.04399 -12.84589 -12.66437 -12.58728 -12.38274 -12.14952 -12.10409 -11.71565 -11.53583 -10.98972 -10.87578 -10.77238 -9.79499 -9.42496 -9.02788 -7.93637 -5.23879 0.33331 1.15391 1.50017 1.51491 1.59855 1.78194 2.05513 2.29250 2.58118 3.36669 3.50744 3.65243 3.73507 3.82586 3.90129 4.06482 4.16091 4.31029 4.36045 4.39558 4.51362 4.55278 4.60983 4.66342 4.72590 4.76485 4.87915 4.94283 5.04056 5.20102 5.20535 5.23554 5.33503 5.41267 5.45981 5.55007 6.06439 6.26415 6.54986 7.12148 7.32939 8.04421 8.28789 9.30007 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.034705 B = 0.003862 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.611933 B = 7247.700565 C = 7661.615208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.068 3.932 3 O -0.180 6.180 4 C -0.026 4.026 5 C -0.211 4.211 6 C -0.267 4.267 7 C 0.594 3.406 8 O -0.579 6.579 9 N -0.602 5.602 10 C 0.096 3.904 11 C -0.148 4.148 12 C 0.171 3.829 13 H 0.072 0.928 14 N -0.729 5.729 15 C -0.238 4.238 16 H 0.084 0.916 17 C -0.075 4.075 18 N -0.972 5.972 19 Si 0.974 3.026 20 H -0.287 1.287 21 H -0.300 1.300 22 H -0.266 1.266 23 C 0.134 3.866 24 H 0.045 0.955 25 C -0.143 4.143 26 H 0.093 0.907 27 H 0.102 0.898 28 H 0.090 0.910 29 H 0.253 0.747 30 H 0.186 0.814 31 H 0.104 0.896 32 H 0.093 0.907 33 H 0.054 0.946 34 H 0.092 0.908 35 H 0.371 0.629 36 H 0.250 0.750 37 H 0.059 0.941 38 H 0.053 0.947 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.204 21.423 -8.477 23.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.014 3.986 3 O -0.076 6.076 4 C -0.091 4.091 5 C -0.230 4.230 6 C -0.271 4.271 7 C 0.386 3.614 8 O -0.462 6.462 9 N -0.334 5.334 10 C -0.026 4.026 11 C -0.189 4.189 12 C 0.061 3.939 13 H 0.090 0.910 14 N -0.368 5.368 15 C -0.369 4.369 16 H 0.102 0.898 17 C -0.267 4.267 18 N -0.622 5.622 19 Si 0.803 3.197 20 H -0.214 1.214 21 H -0.227 1.227 22 H -0.191 1.191 23 C 0.029 3.971 24 H 0.063 0.937 25 C -0.202 4.202 26 H 0.111 0.889 27 H 0.121 0.879 28 H 0.109 0.891 29 H 0.268 0.732 30 H 0.203 0.797 31 H 0.122 0.878 32 H 0.111 0.889 33 H 0.073 0.927 34 H 0.111 0.889 35 H 0.202 0.798 36 H 0.059 0.941 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.599 21.491 -8.624 23.212 hybrid contribution 0.186 -1.451 0.699 1.622 sum 1.785 20.040 -7.925 21.624 Atomic orbital electron populations 1.20628 0.83060 1.05368 1.04803 1.23037 0.94852 0.83143 0.97524 1.83781 1.18139 1.34444 1.71201 1.24768 0.83443 0.96732 1.04171 1.23655 0.96471 0.95419 1.07430 1.21137 0.95578 0.92422 1.17966 1.17285 0.84130 0.84182 0.75781 1.90695 1.18120 1.84299 1.53082 1.48314 1.08550 1.05527 1.71035 1.22949 0.78608 0.99421 1.01626 1.23419 1.01148 0.94720 0.99624 1.21425 0.91704 0.87254 0.93482 0.90998 1.42511 1.32784 1.20980 1.40506 1.19635 1.05377 0.97668 1.14248 0.89805 1.25576 1.00469 1.01673 0.98960 1.69837 1.34038 1.33639 1.24721 0.85133 0.78022 0.78495 0.78055 1.21383 1.22730 1.19076 1.21649 0.97570 0.79975 0.97870 0.93663 1.21932 1.00788 1.01068 0.96362 0.88892 0.87937 0.89108 0.73153 0.79683 0.87791 0.88858 0.92681 0.88913 0.79754 0.94105 0.92179 0.92755 0.91443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.65 9.97 71.24 0.71 -0.94 16 2 C 0.07 1.59 7.37 25.26 0.19 1.78 16 3 O -0.18 -3.49 10.52 4.50 0.05 -3.44 16 4 C -0.03 -0.38 12.03 66.89 0.80 0.43 16 5 C -0.21 -3.94 9.31 23.65 0.22 -3.72 16 6 C -0.27 -7.09 6.22 -18.99 -0.12 -7.20 16 7 C 0.59 19.81 7.64 86.65 0.66 20.47 16 8 O -0.58 -22.51 13.80 -4.09 -0.06 -22.57 16 9 N -0.60 -19.20 3.07 -791.94 -2.43 -21.63 16 10 C 0.10 2.35 5.36 86.85 0.47 2.82 16 11 C -0.15 -4.64 6.77 31.99 0.22 -4.43 16 12 C 0.17 6.53 3.12 46.18 0.14 6.68 16 13 H 0.07 2.67 7.82 -2.38 -0.02 2.65 16 14 N -0.73 -36.06 5.24 -317.32 -1.66 -37.72 16 15 C -0.24 -12.72 9.97 84.04 0.84 -11.88 16 16 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 17 C -0.07 -4.20 5.50 84.86 0.47 -3.74 16 18 N -0.97 -59.39 13.06 21.65 0.28 -59.11 16 19 Si 0.97 45.19 29.55 68.60 2.03 47.22 16 20 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 21 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 22 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 23 C 0.13 4.94 3.23 45.34 0.15 5.09 16 24 H 0.05 1.96 7.71 -2.38 -0.02 1.94 16 25 C -0.14 -4.97 9.09 71.98 0.65 -4.32 16 26 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.10 1.44 8.14 -2.38 -0.02 1.42 16 28 H 0.09 2.23 6.37 -2.38 -0.02 2.21 16 29 H 0.25 1.00 8.06 -2.91 -0.02 0.98 16 30 H 0.19 2.64 5.14 -2.91 -0.01 2.63 16 31 H 0.10 2.12 5.14 -2.39 -0.01 2.10 16 32 H 0.09 1.84 8.10 -2.39 -0.02 1.82 16 33 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.09 2.60 8.14 -2.38 -0.02 2.59 16 35 H 0.37 20.35 7.55 -92.71 -0.70 19.65 16 36 H 0.25 14.89 8.31 -92.70 -0.77 14.12 16 37 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.05 1.97 6.83 -2.39 -0.02 1.95 16 39 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -70.86 319.82 3.98 -66.88 By element: Atomic # 1 Polarization: 28.97 SS G_CDS: 0.37 Total: 29.34 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: 5.40 Total: 1.04 kcal Atomic # 7 Polarization: -114.65 SS G_CDS: -3.81 Total: -118.46 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: -0.01 Total: -26.02 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -70.86 3.98 -66.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985937845.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.608 kcal (2) G-P(sol) polarization free energy of solvation -70.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds