Wall clock time and date at job start Tue Mar 31 2020 00:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.33655 * 125.80246 * 2 1 4 4 C 1.34219 * 110.90898 * 180.26677 * 3 2 1 5 5 C 1.34170 * 109.12432 * 359.76468 * 4 3 2 6 6 C 1.36418 * 125.80397 * 179.85780 * 2 1 3 7 7 C 1.47376 * 127.19152 * 0.02562 * 6 2 1 8 8 O 1.21617 * 119.99846 * 353.04080 * 7 6 2 9 9 N 1.34771 * 120.00206 * 173.04736 * 7 6 2 10 10 C 1.47435 * 125.64801 * 354.38249 * 9 7 6 11 11 C 1.55126 * 104.94082 * 204.03879 * 10 9 7 12 12 C 1.55160 * 101.48868 * 323.22176 * 11 10 9 13 13 H 1.08994 * 110.72014 * 276.83173 * 12 11 10 14 14 N 1.46500 * 110.72036 * 153.73251 * 12 11 10 15 15 C 1.36934 * 119.99498 * 88.84436 * 14 12 11 16 16 H 1.08003 * 120.00315 * 359.97438 * 15 14 12 17 17 C 1.38820 * 119.99667 * 180.02562 * 15 14 12 18 18 N 1.31618 * 119.99637 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99729 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46577 * 179.97438 * 19 17 15 21 21 H 1.48497 * 109.47360 * 299.99828 * 19 17 15 22 22 H 1.48500 * 109.47189 * 60.00207 * 19 17 15 23 23 C 1.47025 * 125.65113 * 174.42797 * 9 7 6 24 24 H 1.08991 * 109.88579 * 59.47917 * 23 9 7 25 25 C 1.53005 * 109.87912 * 298.31610 * 23 9 7 26 26 H 1.09001 * 109.47206 * 270.13579 * 1 2 3 27 27 H 1.08996 * 109.47186 * 30.14359 * 1 2 3 28 28 H 1.09007 * 109.47133 * 150.14258 * 1 2 3 29 29 H 1.07999 * 125.43617 * 179.76221 * 4 3 2 30 30 H 1.08000 * 127.02536 * 179.97438 * 5 4 3 31 31 H 1.08995 * 110.36200 * 323.00029 * 10 9 7 32 32 H 1.08998 * 110.36722 * 85.32786 * 10 9 7 33 33 H 1.09000 * 111.16289 * 205.12556 * 11 10 9 34 34 H 1.09007 * 110.93579 * 81.21539 * 11 10 9 35 35 H 0.97000 * 120.00359 * 268.84171 * 14 12 11 36 36 H 0.97006 * 119.99570 * 180.02562 * 18 17 15 37 37 H 1.08997 * 109.47194 * 302.19733 * 25 23 9 38 38 H 1.08999 * 109.46757 * 62.19038 * 25 23 9 39 39 H 1.08997 * 109.46989 * 182.18953 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.2888 1.0840 0.0000 4 6 3.5859 0.7390 -0.0058 5 6 3.6849 -0.5990 -0.0046 6 6 2.3050 -1.1064 0.0027 7 6 1.8740 -2.5157 0.0057 8 8 0.6963 -2.7911 0.1335 9 7 2.7849 -3.4993 -0.1330 10 6 4.2200 -3.3083 -0.4116 11 6 4.6786 -4.6336 -1.0747 12 6 3.8433 -5.6780 -0.2878 13 1 4.3305 -5.9312 0.6537 14 7 3.6232 -6.8804 -1.0953 15 6 4.5307 -7.9052 -1.0586 16 1 5.4088 -7.8268 -0.4348 17 6 4.3225 -9.0443 -1.8242 18 7 3.2530 -9.1391 -2.5855 19 14 5.5608 -10.4420 -1.7747 20 1 5.1102 -11.5344 -2.6740 21 1 6.8862 -9.9453 -2.2239 22 1 5.6699 -10.9578 -0.3864 23 6 2.5119 -4.9405 -0.0327 24 1 1.7770 -5.2317 -0.7830 25 6 1.9917 -5.2752 1.3668 26 1 -0.3634 0.0024 1.0277 27 1 -0.3633 0.8887 -0.5160 28 1 -0.3634 -0.8913 -0.5116 29 1 4.4172 1.4285 -0.0108 30 1 4.5927 -1.1840 -0.0087 31 1 4.3657 -2.4712 -1.0943 32 1 4.7677 -3.1422 0.5160 33 1 5.7463 -4.7975 -0.9293 34 1 4.4236 -4.6476 -2.1344 35 1 2.8347 -6.9506 -1.6559 36 1 3.1073 -9.9353 -3.1202 37 1 2.7242 -4.9629 2.1110 38 1 1.0518 -4.7511 1.5399 39 1 1.8285 -6.3500 1.4462 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985937847.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:24:47 Heat of formation + Delta-G solvation = -0.983445 kcal Electronic energy + Delta-G solvation = -21822.986318 eV Core-core repulsion = 18539.899420 eV Total energy + Delta-G solvation = -3283.086898 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.67520 -39.75937 -37.33969 -34.20620 -33.20385 -32.08633 -31.34858 -30.84380 -29.14674 -26.93808 -25.27868 -23.84258 -23.20955 -21.75758 -21.15216 -19.77111 -18.79836 -17.33794 -17.17439 -16.50090 -16.13806 -15.75365 -15.15166 -14.61923 -14.06243 -13.77277 -13.63914 -13.40374 -13.21846 -13.11781 -13.00455 -12.75499 -12.62517 -12.13932 -11.86286 -11.83613 -11.42590 -11.11338 -11.02758 -10.80903 -10.58533 -10.28419 -10.05812 -9.85560 -9.77437 -9.63297 -8.94376 -8.74862 -8.30164 -7.03572 -5.81763 -3.12264 1.32492 1.96072 2.68518 3.21929 3.41218 3.45614 3.46702 3.47133 4.40228 4.54572 4.64909 4.77539 5.03890 5.09056 5.24935 5.35576 5.39175 5.41665 5.48677 5.50741 5.60325 5.67232 5.74158 5.80328 5.95697 6.03429 6.10541 6.13462 6.18533 6.30571 6.46463 6.58467 6.61900 6.74744 6.92530 6.93215 7.64627 7.80273 8.35171 8.40032 9.46946 10.01563 10.36455 11.40359 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.035620 B = 0.003845 C = 0.003638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.876442 B = 7281.008640 C = 7695.472806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.071 3.929 3 O -0.179 6.179 4 C -0.046 4.046 5 C -0.193 4.193 6 C -0.236 4.236 7 C 0.601 3.399 8 O -0.546 6.546 9 N -0.600 5.600 10 C 0.094 3.906 11 C -0.157 4.157 12 C 0.176 3.824 13 H 0.066 0.934 14 N -0.714 5.714 15 C -0.245 4.245 16 H 0.072 0.928 17 C -0.009 4.009 18 N -0.930 5.930 19 Si 0.908 3.092 20 H -0.291 1.291 21 H -0.285 1.285 22 H -0.285 1.285 23 C 0.128 3.872 24 H 0.078 0.922 25 C -0.153 4.153 26 H 0.088 0.912 27 H 0.075 0.925 28 H 0.107 0.893 29 H 0.206 0.794 30 H 0.166 0.834 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.386 0.614 36 H 0.257 0.743 37 H 0.050 0.950 38 H 0.059 0.941 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.401 19.765 5.919 20.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.018 3.982 3 O -0.075 6.075 4 C -0.111 4.111 5 C -0.212 4.212 6 C -0.240 4.240 7 C 0.391 3.609 8 O -0.426 6.426 9 N -0.333 5.333 10 C -0.030 4.030 11 C -0.198 4.198 12 C 0.065 3.935 13 H 0.084 0.916 14 N -0.355 5.355 15 C -0.376 4.376 16 H 0.090 0.910 17 C -0.206 4.206 18 N -0.577 5.577 19 Si 0.739 3.261 20 H -0.217 1.217 21 H -0.212 1.212 22 H -0.212 1.212 23 C 0.024 3.976 24 H 0.097 0.903 25 C -0.211 4.211 26 H 0.106 0.894 27 H 0.094 0.906 28 H 0.125 0.875 29 H 0.223 0.777 30 H 0.183 0.817 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.220 0.780 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.248 19.785 6.011 20.680 hybrid contribution 0.891 -0.904 -0.254 1.295 sum 0.643 18.881 5.757 19.750 Atomic orbital electron populations 1.20562 0.83791 1.04830 1.04322 1.22784 0.94076 0.83086 0.98242 1.83745 1.17204 1.35028 1.71549 1.23867 0.83492 0.96449 1.07332 1.23366 0.97327 0.94461 1.06062 1.21187 0.93306 0.93888 1.15625 1.16792 0.84521 0.83008 0.76580 1.90738 1.16489 1.83723 1.51620 1.48276 1.08898 1.06460 1.69692 1.22707 0.81077 0.99724 0.99445 1.23639 1.01161 0.93908 1.01133 1.21241 0.90869 0.86973 0.94458 0.91624 1.42342 1.27405 1.14469 1.51249 1.19166 1.01673 0.94799 1.21966 0.91047 1.24763 0.97894 0.98423 0.99490 1.69659 1.27656 1.29174 1.31253 0.86256 0.80547 0.81962 0.77318 1.21672 1.21209 1.21185 1.21929 0.99257 0.78438 0.97947 0.90350 1.22034 1.01080 1.02361 0.95659 0.89390 0.90600 0.87454 0.77699 0.81703 0.90663 0.91771 0.90519 0.90641 0.77967 0.93311 0.93114 0.92172 0.91023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.81 9.82 36.00 0.35 -0.46 16 2 C 0.07 0.89 7.37 -34.97 -0.26 0.63 16 3 O -0.18 -2.01 10.52 7.64 0.08 -1.93 16 4 C -0.05 -0.42 12.03 29.30 0.35 -0.07 16 5 C -0.19 -2.13 9.28 -37.46 -0.35 -2.48 16 6 C -0.24 -3.30 6.20 -103.28 -0.64 -3.94 16 7 C 0.60 10.08 7.58 -12.54 -0.10 9.98 16 8 O -0.55 -10.36 14.21 5.26 0.07 -10.29 16 9 N -0.60 -9.79 3.07 -164.14 -0.50 -10.29 16 10 C 0.09 1.28 5.14 -2.41 -0.01 1.26 16 11 C -0.16 -2.59 6.79 -24.46 -0.17 -2.75 16 12 C 0.18 3.40 3.12 -66.09 -0.21 3.19 16 13 H 0.07 1.26 7.81 -51.93 -0.41 0.86 16 14 N -0.71 -17.37 5.24 -51.65 -0.27 -17.64 16 15 C -0.25 -6.56 9.97 -15.06 -0.15 -6.71 16 16 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 17 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 18 N -0.93 -27.64 13.06 55.49 0.72 -26.91 16 19 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 C 0.13 2.32 3.19 -66.95 -0.21 2.11 16 24 H 0.08 1.60 7.70 -51.93 -0.40 1.20 16 25 C -0.15 -2.61 9.10 37.16 0.34 -2.27 16 26 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.11 1.29 6.65 -51.93 -0.35 0.94 16 29 H 0.21 1.01 8.06 -52.49 -0.42 0.59 16 30 H 0.17 1.54 5.23 -52.49 -0.27 1.26 16 31 H 0.08 0.91 5.90 -51.93 -0.31 0.60 16 32 H 0.06 0.76 7.78 -51.93 -0.40 0.36 16 33 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 35 H 0.39 10.16 7.53 -40.82 -0.31 9.85 16 36 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.06 1.05 7.10 -51.93 -0.37 0.68 16 39 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 320.81 15.07 4.83 4.83 Total: -1.00 -31.76 320.81 -6.54 -38.30 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -5.32 Total: 8.94 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: -1.14 Total: -1.86 kcal Atomic # 7 Polarization: -54.79 SS G_CDS: -0.05 Total: -54.84 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: 0.16 Total: -12.21 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.76 -6.54 -38.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985937847.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.313 kcal (2) G-P(sol) polarization free energy of solvation -31.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds