Wall clock time and date at job start Tue Mar 31 2020 00:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.33655 * 125.80246 * 2 1 4 4 C 1.34219 * 110.90898 * 180.26677 * 3 2 1 5 5 C 1.34170 * 109.12432 * 359.76468 * 4 3 2 6 6 C 1.36418 * 125.80397 * 179.85780 * 2 1 3 7 7 C 1.47376 * 127.19152 * 0.02562 * 6 2 1 8 8 O 1.21617 * 119.99846 * 353.04080 * 7 6 2 9 9 N 1.34771 * 120.00206 * 173.04736 * 7 6 2 10 10 C 1.47435 * 125.64801 * 354.38249 * 9 7 6 11 11 C 1.55126 * 104.94082 * 204.03879 * 10 9 7 12 12 C 1.55160 * 101.48868 * 323.22176 * 11 10 9 13 13 H 1.08994 * 110.72014 * 276.83173 * 12 11 10 14 14 N 1.46500 * 110.72036 * 153.73251 * 12 11 10 15 15 C 1.36934 * 119.99498 * 88.84436 * 14 12 11 16 16 H 1.08003 * 120.00315 * 359.97438 * 15 14 12 17 17 C 1.38820 * 119.99667 * 180.02562 * 15 14 12 18 18 N 1.31618 * 119.99637 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99729 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46577 * 179.97438 * 19 17 15 21 21 H 1.48497 * 109.47360 * 299.99828 * 19 17 15 22 22 H 1.48500 * 109.47189 * 60.00207 * 19 17 15 23 23 C 1.47025 * 125.65113 * 174.42797 * 9 7 6 24 24 H 1.08991 * 109.88579 * 59.47917 * 23 9 7 25 25 C 1.53005 * 109.87912 * 298.31610 * 23 9 7 26 26 H 1.09001 * 109.47206 * 270.13579 * 1 2 3 27 27 H 1.08996 * 109.47186 * 30.14359 * 1 2 3 28 28 H 1.09007 * 109.47133 * 150.14258 * 1 2 3 29 29 H 1.07999 * 125.43617 * 179.76221 * 4 3 2 30 30 H 1.08000 * 127.02536 * 179.97438 * 5 4 3 31 31 H 1.08995 * 110.36200 * 323.00029 * 10 9 7 32 32 H 1.08998 * 110.36722 * 85.32786 * 10 9 7 33 33 H 1.09000 * 111.16289 * 205.12556 * 11 10 9 34 34 H 1.09007 * 110.93579 * 81.21539 * 11 10 9 35 35 H 0.97000 * 120.00359 * 268.84171 * 14 12 11 36 36 H 0.97006 * 119.99570 * 180.02562 * 18 17 15 37 37 H 1.08997 * 109.47194 * 302.19733 * 25 23 9 38 38 H 1.08999 * 109.46757 * 62.19038 * 25 23 9 39 39 H 1.08997 * 109.46989 * 182.18953 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.2888 1.0840 0.0000 4 6 3.5859 0.7390 -0.0058 5 6 3.6849 -0.5990 -0.0046 6 6 2.3050 -1.1064 0.0027 7 6 1.8740 -2.5157 0.0057 8 8 0.6963 -2.7911 0.1335 9 7 2.7849 -3.4993 -0.1330 10 6 4.2200 -3.3083 -0.4116 11 6 4.6786 -4.6336 -1.0747 12 6 3.8433 -5.6780 -0.2878 13 1 4.3305 -5.9312 0.6537 14 7 3.6232 -6.8804 -1.0953 15 6 4.5307 -7.9052 -1.0586 16 1 5.4088 -7.8268 -0.4348 17 6 4.3225 -9.0443 -1.8242 18 7 3.2530 -9.1391 -2.5855 19 14 5.5608 -10.4420 -1.7747 20 1 5.1102 -11.5344 -2.6740 21 1 6.8862 -9.9453 -2.2239 22 1 5.6699 -10.9578 -0.3864 23 6 2.5119 -4.9405 -0.0327 24 1 1.7770 -5.2317 -0.7830 25 6 1.9917 -5.2752 1.3668 26 1 -0.3634 0.0024 1.0277 27 1 -0.3633 0.8887 -0.5160 28 1 -0.3634 -0.8913 -0.5116 29 1 4.4172 1.4285 -0.0108 30 1 4.5927 -1.1840 -0.0087 31 1 4.3657 -2.4712 -1.0943 32 1 4.7677 -3.1422 0.5160 33 1 5.7463 -4.7975 -0.9293 34 1 4.4236 -4.6476 -2.1344 35 1 2.8347 -6.9506 -1.6559 36 1 3.1073 -9.9353 -3.1202 37 1 2.7242 -4.9629 2.1110 38 1 1.0518 -4.7511 1.5399 39 1 1.8285 -6.3500 1.4462 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985937847.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:24:47 Heat of formation + Delta-G solvation = -21.782486 kcal Electronic energy + Delta-G solvation = -21823.888232 eV Core-core repulsion = 18539.899420 eV Total energy + Delta-G solvation = -3283.988812 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.53441 -41.08649 -38.75097 -35.95841 -34.30169 -33.26620 -32.71690 -32.17531 -30.78349 -27.84943 -26.89862 -25.15557 -24.78218 -22.87219 -22.33830 -21.17811 -19.83104 -19.17905 -18.34439 -17.60504 -17.23882 -16.92543 -16.59019 -16.16793 -15.42033 -15.38849 -14.93076 -14.71259 -14.57252 -14.11900 -14.03010 -13.83617 -13.80263 -13.58946 -13.29178 -13.05323 -12.82977 -12.67065 -12.59157 -12.42299 -12.19991 -12.11478 -11.70947 -11.55768 -11.01242 -10.89087 -10.76856 -9.79547 -9.42526 -9.02698 -7.93230 -5.23600 0.33213 1.15763 1.50034 1.52982 1.58859 1.78437 2.05827 2.28535 2.58464 3.36842 3.50750 3.65421 3.73362 3.82005 3.91873 4.05260 4.16745 4.32388 4.35084 4.39470 4.50562 4.57135 4.61443 4.66180 4.71011 4.76535 4.88481 4.91512 5.03054 5.18897 5.20521 5.22502 5.32924 5.41305 5.46208 5.54861 6.06618 6.26586 6.54939 7.11844 7.33083 8.04676 8.29033 9.30202 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.035620 B = 0.003845 C = 0.003638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.876442 B = 7281.008640 C = 7695.472806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.068 3.932 3 O -0.179 6.179 4 C -0.027 4.027 5 C -0.207 4.207 6 C -0.267 4.267 7 C 0.594 3.406 8 O -0.580 6.580 9 N -0.603 5.603 10 C 0.102 3.898 11 C -0.148 4.148 12 C 0.171 3.829 13 H 0.073 0.927 14 N -0.729 5.729 15 C -0.239 4.239 16 H 0.084 0.916 17 C -0.075 4.075 18 N -0.972 5.972 19 Si 0.974 3.026 20 H -0.300 1.300 21 H -0.275 1.275 22 H -0.277 1.277 23 C 0.133 3.867 24 H 0.044 0.956 25 C -0.143 4.143 26 H 0.096 0.904 27 H 0.101 0.899 28 H 0.084 0.916 29 H 0.253 0.747 30 H 0.183 0.817 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.053 0.947 35 H 0.370 0.630 36 H 0.250 0.750 37 H 0.069 0.931 38 H 0.050 0.950 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.804 22.150 7.030 23.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.014 3.986 3 O -0.075 6.075 4 C -0.091 4.091 5 C -0.226 4.226 6 C -0.271 4.271 7 C 0.386 3.614 8 O -0.463 6.463 9 N -0.336 5.336 10 C -0.020 4.020 11 C -0.189 4.189 12 C 0.062 3.938 13 H 0.091 0.909 14 N -0.368 5.368 15 C -0.371 4.371 16 H 0.102 0.898 17 C -0.267 4.267 18 N -0.622 5.622 19 Si 0.803 3.197 20 H -0.227 1.227 21 H -0.201 1.201 22 H -0.203 1.203 23 C 0.029 3.971 24 H 0.062 0.938 25 C -0.201 4.201 26 H 0.114 0.886 27 H 0.119 0.881 28 H 0.103 0.897 29 H 0.268 0.732 30 H 0.200 0.800 31 H 0.116 0.884 32 H 0.113 0.887 33 H 0.112 0.888 34 H 0.072 0.928 35 H 0.202 0.798 36 H 0.059 0.941 37 H 0.088 0.912 38 H 0.070 0.930 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.206 22.228 7.158 23.456 hybrid contribution 0.126 -1.515 -0.564 1.621 sum 2.332 20.713 6.593 21.862 Atomic orbital electron populations 1.20569 0.83064 1.04932 1.04898 1.23033 0.94846 0.83173 0.97509 1.83784 1.18133 1.34402 1.71224 1.24754 0.83429 0.96711 1.04254 1.23548 0.96374 0.95393 1.07288 1.21145 0.95597 0.92373 1.17986 1.17290 0.84076 0.84214 0.75792 1.90712 1.17953 1.84450 1.53163 1.48309 1.10162 1.05331 1.69760 1.22854 0.79449 0.98621 1.01102 1.23462 1.01519 0.94388 0.99553 1.21429 0.91928 0.86064 0.94408 0.90875 1.42516 1.26603 1.15883 1.51809 1.19606 1.01805 0.94985 1.20678 0.89786 1.25585 0.99872 1.01187 1.00029 1.69836 1.29924 1.29601 1.32877 0.85200 0.78549 0.78665 0.77260 1.22706 1.20061 1.20312 1.21650 0.97897 0.80032 0.97523 0.93768 1.21919 1.01137 1.01521 0.95490 0.88551 0.88053 0.89705 0.73155 0.79987 0.88411 0.88710 0.88824 0.92819 0.79774 0.94109 0.91237 0.93048 0.92065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.57 9.82 71.23 0.70 -0.87 16 2 C 0.07 1.59 7.37 25.26 0.19 1.77 16 3 O -0.18 -3.46 10.52 4.41 0.05 -3.41 16 4 C -0.03 -0.38 12.03 66.89 0.80 0.43 16 5 C -0.21 -3.85 9.28 23.65 0.22 -3.63 16 6 C -0.27 -7.07 6.20 -18.99 -0.12 -7.18 16 7 C 0.59 19.87 7.58 86.65 0.66 20.53 16 8 O -0.58 -22.79 14.21 -4.08 -0.06 -22.85 16 9 N -0.60 -19.27 3.07 -791.49 -2.43 -21.70 16 10 C 0.10 2.50 5.14 86.93 0.45 2.95 16 11 C -0.15 -4.66 6.79 32.06 0.22 -4.45 16 12 C 0.17 6.54 3.12 46.18 0.14 6.68 16 13 H 0.07 2.70 7.81 -2.39 -0.02 2.68 16 14 N -0.73 -36.14 5.24 -317.32 -1.66 -37.80 16 15 C -0.24 -12.80 9.97 84.04 0.84 -11.97 16 16 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 17 C -0.07 -4.20 5.50 84.86 0.47 -3.74 16 18 N -0.97 -59.50 13.06 21.65 0.28 -59.21 16 19 Si 0.97 45.18 29.55 68.60 2.03 47.21 16 20 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 21 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 22 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 23 C 0.13 4.93 3.19 45.34 0.14 5.08 16 24 H 0.04 1.93 7.70 -2.39 -0.02 1.91 16 25 C -0.14 -4.91 9.10 71.98 0.65 -4.25 16 26 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.08 2.11 6.65 -2.38 -0.02 2.09 16 29 H 0.25 0.97 8.06 -2.91 -0.02 0.94 16 30 H 0.18 2.58 5.23 -2.91 -0.02 2.56 16 31 H 0.10 2.03 5.90 -2.39 -0.01 2.02 16 32 H 0.09 1.84 7.78 -2.39 -0.02 1.82 16 33 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 34 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 35 H 0.37 20.41 7.53 -92.71 -0.70 19.71 16 36 H 0.25 14.95 8.31 -92.70 -0.77 14.18 16 37 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.05 1.84 7.10 -2.39 -0.02 1.83 16 39 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -71.13 320.81 3.94 -67.19 By element: Atomic # 1 Polarization: 28.84 SS G_CDS: 0.37 Total: 29.21 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: 5.36 Total: 1.37 kcal Atomic # 7 Polarization: -114.90 SS G_CDS: -3.81 Total: -118.71 kcal Atomic # 8 Polarization: -26.25 SS G_CDS: -0.01 Total: -26.26 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -71.13 3.94 -67.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985937847.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.403 kcal (2) G-P(sol) polarization free energy of solvation -71.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds