Wall clock time and date at job start Tue Mar 31 2020 00:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35135 * 125.61315 * 2 1 4 4 C 1.40362 * 107.11383 * 180.02562 * 3 2 1 5 5 C 1.36550 * 106.70811 * 0.02562 * 4 3 2 6 6 C 1.46658 * 125.98604 * 179.97438 * 5 4 3 7 7 O 1.21698 * 120.00345 * 359.97438 * 6 5 4 8 8 N 1.34780 * 119.99628 * 179.97438 * 6 5 4 9 9 C 1.47424 * 125.64823 * 0.03687 * 8 6 5 10 10 C 1.54908 * 104.82940 * 204.09088 * 9 8 6 11 11 C 1.55153 * 101.58630 * 322.99437 * 10 9 8 12 12 H 1.09003 * 110.72278 * 153.86459 * 11 10 9 13 13 N 1.46500 * 110.72185 * 277.13694 * 11 10 9 14 14 C 1.36936 * 120.00145 * 268.52653 * 13 11 10 15 15 H 1.08007 * 119.99576 * 359.97438 * 14 13 11 16 16 C 1.38808 * 120.00242 * 179.97438 * 14 13 11 17 17 N 1.31625 * 119.99877 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00109 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47226 * 59.99893 * 18 16 14 20 20 H 1.48501 * 109.47053 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.46883 * 299.99546 * 18 16 14 22 22 C 1.47022 * 125.64449 * 179.97438 * 8 6 5 23 23 H 1.09002 * 109.88254 * 59.55817 * 22 8 6 24 24 C 1.53003 * 109.88494 * 298.54565 * 22 8 6 25 25 O 1.33926 * 125.61802 * 180.31631 * 2 1 3 26 26 H 1.09008 * 109.46802 * 90.00811 * 1 2 3 27 27 H 1.08996 * 109.47373 * 209.99917 * 1 2 3 28 28 H 1.08995 * 109.47695 * 330.00875 * 1 2 3 29 29 H 1.07993 * 126.44210 * 0.02857 * 3 2 1 30 30 H 1.07998 * 126.65082 * 179.97438 * 4 3 2 31 31 H 1.08992 * 110.36764 * 322.93101 * 9 8 6 32 32 H 1.09001 * 110.36208 * 85.14843 * 9 8 6 33 33 H 1.09006 * 111.00041 * 81.06839 * 10 9 8 34 34 H 1.09003 * 111.00467 * 204.91623 * 10 9 8 35 35 H 0.97002 * 119.99779 * 88.51828 * 13 11 10 36 36 H 0.96998 * 119.99493 * 180.02562 * 17 16 14 37 37 H 1.09000 * 109.46713 * 61.71864 * 24 22 8 38 38 H 1.08998 * 109.47126 * 181.71763 * 24 22 8 39 39 H 1.09002 * 109.46967 * 301.72379 * 24 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0986 0.0000 4 6 3.6250 0.6532 -0.0006 5 6 3.5823 -0.7116 -0.0015 6 6 4.7415 -1.6100 -0.0029 7 8 5.8681 -1.1498 -0.0038 8 7 4.5590 -2.9454 -0.0032 9 6 3.2558 -3.6345 -0.0030 10 6 3.5444 -5.0285 0.6078 11 6 4.9467 -5.3411 0.0219 12 1 5.4920 -6.0262 0.6712 13 7 4.8324 -5.8885 -1.3322 14 6 4.7522 -7.2427 -1.5188 15 1 4.7735 -7.9072 -0.6677 16 6 4.6434 -7.7613 -2.8018 17 7 4.6169 -6.9513 -3.8389 18 14 4.5346 -9.6087 -3.0564 19 1 3.3372 -10.1355 -2.3537 20 1 4.4255 -9.9027 -4.5079 21 1 5.7541 -10.2562 -2.5099 22 6 5.6268 -3.9560 -0.0051 23 1 6.2543 -3.8340 0.8778 24 6 6.4756 -3.8139 -1.2701 25 8 2.2870 -1.0887 -0.0060 26 1 -0.3633 -0.0001 -1.0278 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3634 0.8900 0.5137 29 1 1.9612 2.1260 0.0004 30 1 4.5113 1.2704 -0.0011 31 1 2.5395 -3.0912 0.6133 32 1 2.8798 -3.7351 -1.0211 33 1 3.5780 -4.9788 1.6962 34 1 2.8094 -5.7611 0.2742 35 1 4.8135 -5.2915 -2.0966 36 1 4.5405 -7.3137 -4.7354 37 1 6.9459 -2.8307 -1.2835 38 1 7.2458 -4.5852 -1.2795 39 1 5.8399 -3.9245 -2.1486 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985964926.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:24:52 Heat of formation + Delta-G solvation = 0.237490 kcal Electronic energy + Delta-G solvation = -22057.726113 eV Core-core repulsion = 18774.692159 eV Total energy + Delta-G solvation = -3283.033954 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.72087 -39.76646 -37.45929 -34.08333 -33.30316 -32.16478 -31.47957 -30.80312 -29.04132 -27.06199 -25.21469 -23.64915 -23.09246 -21.78465 -21.05969 -19.98381 -18.96042 -17.56036 -17.11602 -16.58290 -16.05414 -15.56122 -14.84228 -14.59766 -13.95707 -13.86500 -13.43601 -13.33823 -13.24923 -13.16503 -13.02000 -12.68450 -12.65114 -12.26979 -12.04174 -11.74809 -11.25183 -10.98583 -10.95063 -10.73680 -10.62739 -10.27787 -10.11797 -10.06139 -9.84576 -9.61624 -8.96269 -8.63684 -8.26568 -7.04102 -5.82299 -3.12172 1.09415 2.28196 2.60019 3.25129 3.35882 3.40918 3.45874 3.46717 4.45657 4.54034 4.73222 4.85449 5.08539 5.11342 5.20116 5.26990 5.40562 5.47639 5.57346 5.60978 5.64681 5.76301 5.77073 5.82252 5.92437 6.03209 6.17596 6.32074 6.34937 6.41943 6.51870 6.61099 6.70586 6.80893 6.95050 7.01959 7.65048 7.72869 8.25708 8.35837 9.47350 10.02240 10.37453 11.39855 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.024322 B = 0.004482 C = 0.004124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.957722 B = 6245.189268 C = 6787.603394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.010 3.990 3 C -0.225 4.225 4 C -0.126 4.126 5 C -0.066 4.066 6 C 0.610 3.390 7 O -0.529 6.529 8 N -0.597 5.597 9 C 0.105 3.895 10 C -0.159 4.159 11 C 0.172 3.828 12 H 0.072 0.928 13 N -0.713 5.713 14 C -0.245 4.245 15 H 0.072 0.928 16 C -0.009 4.009 17 N -0.931 5.931 18 Si 0.908 3.092 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.285 1.285 22 C 0.126 3.874 23 H 0.074 0.926 24 C -0.150 4.150 25 O -0.154 6.154 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.090 0.910 29 H 0.153 0.847 30 H 0.158 0.842 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.089 0.911 35 H 0.388 0.612 36 H 0.257 0.743 37 H 0.054 0.946 38 H 0.069 0.931 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.316 13.480 9.278 17.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.043 4.043 3 C -0.244 4.244 4 C -0.147 4.147 5 C -0.118 4.118 6 C 0.399 3.601 7 O -0.408 6.408 8 N -0.329 5.329 9 C -0.017 4.017 10 C -0.201 4.201 11 C 0.060 3.940 12 H 0.090 0.910 13 N -0.355 5.355 14 C -0.376 4.376 15 H 0.090 0.910 16 C -0.205 4.205 17 N -0.578 5.578 18 Si 0.739 3.261 19 H -0.213 1.213 20 H -0.217 1.217 21 H -0.212 1.212 22 C 0.023 3.977 23 H 0.092 0.908 24 C -0.208 4.208 25 O -0.050 6.050 26 H 0.104 0.896 27 H 0.098 0.902 28 H 0.108 0.892 29 H 0.171 0.829 30 H 0.176 0.824 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.107 0.893 35 H 0.225 0.775 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.788 13.256 9.235 17.524 hybrid contribution -0.188 -0.579 -0.527 0.805 sum -6.977 12.677 8.708 16.888 Atomic orbital electron populations 1.20391 0.84758 1.04291 1.03949 1.22850 0.94373 0.84462 1.02612 1.21536 0.92382 0.99608 1.10858 1.21886 0.98507 0.92898 1.01372 1.22136 0.81893 0.94495 1.13243 1.16186 0.85943 0.80325 0.77689 1.90843 1.22039 1.75568 1.52367 1.48552 1.09683 1.04192 1.70427 1.22412 0.84301 0.93322 1.01658 1.23539 1.02226 0.95416 0.98876 1.21205 0.92573 0.90786 0.89430 0.90970 1.42548 1.87172 1.04785 1.01002 1.19200 1.43066 0.83103 0.92264 0.91039 1.24743 1.02570 0.97704 0.95499 1.69656 1.56808 1.33460 0.97903 0.86265 0.77878 0.85246 0.76737 1.21255 1.21738 1.21210 1.22103 0.88647 0.87940 0.99046 0.90815 1.21932 1.00011 1.01481 0.97383 1.84176 1.16065 1.34359 1.70433 0.89615 0.90159 0.89176 0.82922 0.82413 0.90993 0.90920 0.92003 0.89281 0.77522 0.93352 0.92651 0.91221 0.91501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.54 10.41 36.01 0.37 -0.17 16 2 C 0.01 0.11 7.31 -35.41 -0.26 -0.15 16 3 C -0.22 -2.49 10.77 -39.89 -0.43 -2.91 16 4 C -0.13 -1.71 10.62 -39.39 -0.42 -2.12 16 5 C -0.07 -1.03 6.93 -36.79 -0.25 -1.29 16 6 C 0.61 11.00 7.61 -12.86 -0.10 10.90 16 7 O -0.53 -10.61 15.89 5.19 0.08 -10.53 16 8 N -0.60 -10.49 3.07 -164.55 -0.50 -10.99 16 9 C 0.11 1.73 6.14 -2.53 -0.02 1.71 16 10 C -0.16 -2.65 6.77 -24.59 -0.17 -2.81 16 11 C 0.17 3.29 3.48 -66.10 -0.23 3.06 16 12 H 0.07 1.35 8.09 -51.93 -0.42 0.93 16 13 N -0.71 -16.92 4.55 -51.65 -0.24 -17.15 16 14 C -0.25 -6.47 9.96 -15.06 -0.15 -6.62 16 15 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 16 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 17 N -0.93 -27.37 13.06 55.49 0.72 -26.64 16 18 Si 0.91 21.75 29.55 -169.99 -5.02 16.73 16 19 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 22 C 0.13 2.28 3.42 -66.95 -0.23 2.05 16 23 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 24 C -0.15 -2.91 8.50 37.16 0.32 -2.59 16 25 O -0.15 -2.20 7.86 5.01 0.04 -2.16 16 26 H 0.09 0.53 8.14 -51.92 -0.42 0.10 16 27 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 30 H 0.16 1.96 8.06 -52.49 -0.42 1.54 16 31 H 0.07 1.06 6.23 -51.93 -0.32 0.74 16 32 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.09 1.59 8.14 -51.93 -0.42 1.16 16 35 H 0.39 9.97 5.69 -40.82 -0.23 9.74 16 36 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 37 H 0.05 1.07 6.87 -51.93 -0.36 0.71 16 38 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.07 1.44 6.23 -51.93 -0.32 1.12 16 LS Contribution 323.24 15.07 4.87 4.87 Total: -1.00 -30.91 323.24 -7.13 -38.04 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -5.43 Total: 9.12 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: -1.66 Total: -1.28 kcal Atomic # 7 Polarization: -54.77 SS G_CDS: -0.02 Total: -54.79 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.12 Total: -12.69 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.91 -7.13 -38.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985964926.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.275 kcal (2) G-P(sol) polarization free energy of solvation -30.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds