Wall clock time and date at job start Tue Mar 31 2020 00:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35131 * 125.60965 * 2 1 4 4 C 1.40370 * 107.10840 * 179.78553 * 3 2 1 5 5 C 1.36535 * 106.70982 * 0.40893 * 4 3 2 6 6 C 1.46660 * 125.98659 * 179.85088 * 5 4 3 7 7 O 1.21692 * 120.00214 * 359.71857 * 6 5 4 8 8 N 1.34776 * 119.99692 * 179.71687 * 6 5 4 9 9 C 1.47426 * 125.65357 * 0.03114 * 8 6 5 10 10 C 1.54910 * 104.83403 * 204.08927 * 9 8 6 11 11 C 1.55150 * 101.58155 * 322.98805 * 10 9 8 12 12 H 1.09000 * 110.72405 * 276.96391 * 11 10 9 13 13 N 1.46505 * 110.72033 * 153.86455 * 11 10 9 14 14 C 1.36931 * 119.99788 * 86.45285 * 13 11 10 15 15 H 1.08002 * 120.00438 * 0.02562 * 14 13 11 16 16 C 1.38817 * 119.99680 * 179.72358 * 14 13 11 17 17 N 1.31614 * 119.99888 * 0.27479 * 16 14 13 18 18 Si 1.86803 * 119.99862 * 180.27671 * 16 14 13 19 19 H 1.48496 * 109.47141 * 59.99751 * 18 16 14 20 20 H 1.48490 * 109.47071 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46993 * 300.00028 * 18 16 14 22 22 C 1.47026 * 125.64704 * 179.97438 * 8 6 5 23 23 H 1.08997 * 109.88095 * 59.56365 * 22 8 6 24 24 C 1.53004 * 109.88236 * 298.39618 * 22 8 6 25 25 O 1.33931 * 125.62120 * 180.02562 * 2 1 3 26 26 H 1.09002 * 109.47099 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47209 * 299.97748 * 1 2 3 28 28 H 1.08996 * 109.47347 * 59.98229 * 1 2 3 29 29 H 1.07996 * 126.44811 * 0.03905 * 3 2 1 30 30 H 1.08003 * 126.64300 * 180.30642 * 4 3 2 31 31 H 1.08998 * 110.37010 * 85.24819 * 9 8 6 32 32 H 1.08998 * 110.45528 * 322.97562 * 9 8 6 33 33 H 1.08992 * 111.00414 * 204.90818 * 10 9 8 34 34 H 1.09006 * 111.00345 * 81.05844 * 10 9 8 35 35 H 0.97000 * 119.99792 * 266.45080 * 13 11 10 36 36 H 0.97005 * 119.99715 * 179.97438 * 17 16 14 37 37 H 1.08992 * 109.47364 * 302.18759 * 24 22 8 38 38 H 1.09001 * 109.47157 * 62.19172 * 24 22 8 39 39 H 1.09001 * 109.46896 * 182.18806 * 24 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2938 1.0986 0.0000 4 6 3.6250 0.6532 0.0050 5 6 3.5823 -0.7115 -0.0015 6 6 4.7415 -1.6099 -0.0025 7 8 5.8680 -1.1497 -0.0025 8 7 4.5591 -2.9453 -0.0035 9 6 3.2558 -3.6345 -0.0042 10 6 3.5443 -5.0288 0.6061 11 6 4.9467 -5.3410 0.0206 12 1 4.8620 -5.7506 -0.9860 13 7 5.6793 -6.2622 0.8931 14 6 5.5127 -7.6143 0.7551 15 1 4.8416 -8.0017 0.0028 16 6 6.2112 -8.4872 1.5779 17 7 7.0294 -8.0150 2.4943 18 14 5.9898 -10.3319 1.3845 19 1 6.3872 -10.7370 0.0123 20 1 6.8399 -11.0391 2.3756 21 1 4.5658 -10.6861 1.6123 22 6 5.6268 -3.9559 -0.0051 23 1 6.2537 -3.8344 0.8782 24 6 6.4742 -3.8157 -1.2714 25 8 2.2870 -1.0887 -0.0005 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5135 0.8902 28 1 -0.3634 0.5141 -0.8898 29 1 1.9611 2.1261 0.0006 30 1 4.5112 1.2704 0.0110 31 1 2.8811 -3.7364 -1.0227 32 1 2.5378 -3.0923 0.6109 33 1 2.8094 -5.7611 0.2719 34 1 3.5774 -4.9796 1.6945 35 1 6.2823 -5.9142 1.5685 36 1 7.5172 -8.6250 3.0696 37 1 5.8361 -3.9193 -2.1489 38 1 6.9512 -2.8356 -1.2827 39 1 7.2390 -4.5921 -1.2846 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985964928.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:24:54 Heat of formation + Delta-G solvation = -25.083013 kcal Electronic energy + Delta-G solvation = -21733.326559 eV Core-core repulsion = 18449.194625 eV Total energy + Delta-G solvation = -3284.131934 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.72326 -41.16184 -38.89290 -35.98851 -34.32571 -33.51303 -32.85691 -32.29076 -30.91224 -28.07491 -26.89426 -24.97091 -24.38731 -22.84755 -22.18114 -21.57476 -20.71319 -19.20750 -18.55099 -17.79990 -17.35417 -16.70252 -16.52221 -16.03787 -15.49390 -15.44929 -14.88799 -14.63574 -14.34135 -14.13388 -14.03259 -13.93518 -13.73327 -13.65039 -13.32477 -13.15577 -12.91040 -12.76816 -12.66074 -12.54418 -12.22292 -12.12782 -11.73566 -11.62652 -11.34040 -11.04469 -10.90434 -9.92142 -9.41794 -9.04315 -7.93626 -5.24271 -0.01494 1.34479 1.47565 1.50966 1.53155 1.59041 1.97428 2.05705 2.57893 3.32852 3.42618 3.65169 3.72407 3.87430 3.93914 3.98102 4.13586 4.27590 4.35633 4.46102 4.52336 4.56111 4.61651 4.67804 4.77464 4.78518 4.88151 4.93546 4.99562 5.14926 5.16441 5.17614 5.26420 5.39387 5.48810 5.54341 5.90744 6.25837 6.34528 6.86581 7.32751 8.03350 8.28132 9.29699 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.030793 B = 0.003892 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.076256 B = 7192.866213 C = 7766.843826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.022 3.978 3 C -0.230 4.230 4 C -0.119 4.119 5 C -0.106 4.106 6 C 0.608 3.392 7 O -0.562 6.562 8 N -0.601 5.601 9 C 0.109 3.891 10 C -0.145 4.145 11 C 0.173 3.827 12 H 0.074 0.926 13 N -0.728 5.728 14 C -0.240 4.240 15 H 0.084 0.916 16 C -0.074 4.074 17 N -0.971 5.971 18 Si 0.975 3.025 19 H -0.277 1.277 20 H -0.300 1.300 21 H -0.275 1.275 22 C 0.132 3.868 23 H 0.052 0.948 24 C -0.145 4.145 25 O -0.165 6.165 26 H 0.084 0.916 27 H 0.109 0.891 28 H 0.112 0.888 29 H 0.186 0.814 30 H 0.160 0.840 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.056 0.944 35 H 0.371 0.629 36 H 0.251 0.749 37 H 0.069 0.931 38 H 0.054 0.946 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.263 17.108 -7.557 24.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.030 4.030 3 C -0.248 4.248 4 C -0.139 4.139 5 C -0.158 4.158 6 C 0.398 3.602 7 O -0.444 6.444 8 N -0.333 5.333 9 C -0.013 4.013 10 C -0.186 4.186 11 C 0.063 3.937 12 H 0.092 0.908 13 N -0.368 5.368 14 C -0.371 4.371 15 H 0.102 0.898 16 C -0.266 4.266 17 N -0.622 5.622 18 Si 0.804 3.196 19 H -0.203 1.203 20 H -0.227 1.227 21 H -0.201 1.201 22 C 0.028 3.972 23 H 0.070 0.930 24 C -0.203 4.203 25 O -0.062 6.062 26 H 0.103 0.897 27 H 0.127 0.873 28 H 0.130 0.870 29 H 0.203 0.797 30 H 0.178 0.822 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.112 0.888 34 H 0.075 0.925 35 H 0.203 0.797 36 H 0.059 0.941 37 H 0.088 0.912 38 H 0.073 0.927 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.801 16.901 -7.630 24.362 hybrid contribution 0.901 -0.785 0.608 1.341 sum -14.901 16.116 -7.021 23.045 Atomic orbital electron populations 1.20672 0.81329 1.05523 1.05868 1.23811 0.96054 0.83653 0.99509 1.21900 0.90892 1.01387 1.10627 1.22197 1.00125 0.92343 0.99270 1.21607 0.82016 0.94457 1.17671 1.16545 0.86546 0.80350 0.76760 1.90820 1.23747 1.76089 1.53769 1.48481 1.09767 1.04141 1.70892 1.22536 0.83986 0.92439 1.02340 1.23402 0.99445 0.95431 1.00334 1.21416 0.90591 0.87004 0.94672 0.90783 1.42500 1.51794 1.02365 1.40103 1.19592 1.20159 0.83234 1.14133 0.89784 1.25588 0.99759 1.02447 0.98838 1.69831 1.32763 1.34988 1.24577 0.85194 0.77401 0.80036 0.77004 1.20285 1.22681 1.20098 1.21729 0.88895 0.87889 0.98642 0.93023 1.21952 0.99893 1.01968 0.96484 1.84126 1.15441 1.35652 1.70960 0.89727 0.87263 0.87007 0.79700 0.82204 0.89240 0.89199 0.88806 0.92547 0.79655 0.94075 0.91231 0.92700 0.91638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.56 10.41 71.24 0.74 0.18 16 2 C 0.02 0.38 7.31 24.97 0.18 0.56 16 3 C -0.23 -3.94 10.77 22.07 0.24 -3.70 16 4 C -0.12 -2.86 10.62 22.39 0.24 -2.62 16 5 C -0.11 -3.03 6.93 24.07 0.17 -2.86 16 6 C 0.61 21.18 7.61 86.44 0.66 21.83 16 7 O -0.56 -22.88 15.91 -4.32 -0.07 -22.95 16 8 N -0.60 -20.09 3.07 -792.72 -2.43 -22.52 16 9 C 0.11 3.00 6.17 86.86 0.54 3.54 16 10 C -0.15 -4.76 6.77 31.98 0.22 -4.54 16 11 C 0.17 6.68 3.11 46.18 0.14 6.82 16 12 H 0.07 2.76 7.84 -2.39 -0.02 2.74 16 13 N -0.73 -36.11 5.25 -317.32 -1.67 -37.78 16 14 C -0.24 -12.84 9.98 84.04 0.84 -12.00 16 15 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 16 C -0.07 -4.17 5.50 84.86 0.47 -3.71 16 17 N -0.97 -59.34 13.06 21.65 0.28 -59.06 16 18 Si 0.97 45.20 29.55 68.60 2.03 47.23 16 19 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 20 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 21 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 22 C 0.13 4.94 3.21 45.34 0.15 5.08 16 23 H 0.05 2.22 7.69 -2.39 -0.02 2.20 16 24 C -0.14 -4.99 9.10 71.98 0.65 -4.34 16 25 O -0.17 -3.91 7.86 -4.98 -0.04 -3.95 16 26 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.19 1.89 8.06 -2.91 -0.02 1.87 16 30 H 0.16 3.67 8.06 -2.91 -0.02 3.65 16 31 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.09 2.28 6.22 -2.39 -0.01 2.26 16 33 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 34 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 35 H 0.37 20.37 7.51 -92.71 -0.70 19.67 16 36 H 0.25 14.94 8.31 -92.70 -0.77 14.17 16 37 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.05 1.97 6.90 -2.39 -0.02 1.95 16 39 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -69.78 327.04 3.69 -66.09 By element: Atomic # 1 Polarization: 28.34 SS G_CDS: 0.36 Total: 28.70 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: 5.23 Total: 4.23 kcal Atomic # 7 Polarization: -115.54 SS G_CDS: -3.81 Total: -119.36 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: -0.11 Total: -26.90 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -69.78 3.69 -66.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985964928.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.007 kcal (2) G-P(sol) polarization free energy of solvation -69.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds