Wall clock time and date at job start Tue Mar 31 2020 00:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35127 * 125.61654 * 2 1 4 4 C 1.40363 * 107.11422 * 179.97438 * 3 2 1 5 5 C 1.36539 * 106.70828 * 0.02562 * 4 3 2 6 6 C 1.46660 * 125.98774 * 179.97438 * 5 4 3 7 7 O 1.21697 * 120.00324 * 359.97438 * 6 5 4 8 8 N 1.34782 * 120.00272 * 180.02562 * 6 5 4 9 9 C 1.47424 * 125.64141 * 359.97438 * 8 6 5 10 10 C 1.54912 * 104.82652 * 155.90919 * 9 8 6 11 11 C 1.55150 * 101.58344 * 37.00688 * 10 9 8 12 12 H 1.09009 * 110.72012 * 205.95809 * 11 10 9 13 13 N 1.46500 * 110.72279 * 82.86348 * 11 10 9 14 14 C 1.36935 * 120.00024 * 150.88482 * 13 11 10 15 15 H 1.07999 * 120.00094 * 0.02562 * 14 13 11 16 16 C 1.38818 * 119.99895 * 179.97438 * 14 13 11 17 17 N 1.31620 * 119.99782 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00143 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47305 * 180.02562 * 18 16 14 20 20 H 1.48496 * 109.46959 * 300.00707 * 18 16 14 21 21 H 1.48498 * 109.46774 * 60.00234 * 18 16 14 22 22 C 1.47019 * 125.64779 * 180.02562 * 8 6 5 23 23 H 1.08996 * 109.88324 * 300.43335 * 22 8 6 24 24 C 1.52995 * 109.88421 * 61.60876 * 22 8 6 25 25 O 1.33931 * 125.61393 * 180.25340 * 2 1 3 26 26 H 1.08996 * 109.47265 * 89.99442 * 1 2 3 27 27 H 1.09004 * 109.46867 * 209.99833 * 1 2 3 28 28 H 1.09004 * 109.46554 * 329.98810 * 1 2 3 29 29 H 1.08005 * 126.44545 * 359.97438 * 3 2 1 30 30 H 1.08001 * 126.64552 * 180.02562 * 4 3 2 31 31 H 1.08992 * 110.37345 * 37.06876 * 9 8 6 32 32 H 1.08998 * 110.36617 * 274.74135 * 9 8 6 33 33 H 1.08996 * 111.00289 * 278.92891 * 10 9 8 34 34 H 1.09005 * 111.03333 * 155.09500 * 10 9 8 35 35 H 0.97004 * 119.99792 * 330.87965 * 13 11 10 36 36 H 0.97003 * 119.99624 * 180.02562 * 17 16 14 37 37 H 1.09002 * 109.47324 * 172.54134 * 24 22 8 38 38 H 1.09004 * 109.47034 * 292.54171 * 24 22 8 39 39 H 1.08997 * 109.47287 * 52.53348 * 24 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0985 0.0000 4 6 3.6250 0.6531 0.0006 5 6 3.5823 -0.7117 0.0004 6 6 4.7414 -1.6102 0.0003 7 8 5.8680 -1.1501 -0.0001 8 7 4.5590 -2.9456 -0.0005 9 6 3.2556 -3.6346 -0.0008 10 6 3.5440 -5.0281 -0.6129 11 6 4.9464 -5.3412 -0.0278 12 1 5.4903 -6.0282 -0.6763 13 7 4.8327 -5.8897 1.3259 14 6 5.7833 -6.7562 1.7957 15 1 6.6171 -7.0349 1.1684 16 6 5.6758 -7.2755 3.0786 17 7 4.6598 -6.9354 3.8431 18 14 6.9721 -8.4581 3.7192 19 1 6.6291 -8.8650 5.1056 20 1 7.0193 -9.6599 2.8483 21 1 8.2982 -7.7897 3.7127 22 6 5.6267 -3.9562 -0.0002 23 1 6.2535 -3.8336 -0.8834 24 6 6.4739 -3.8177 1.2663 25 8 2.2869 -1.0888 -0.0048 26 1 -0.3633 0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3632 0.8899 0.5141 29 1 1.9613 2.1260 -0.0004 30 1 4.5113 1.2702 0.0011 31 1 2.5391 -3.0908 -0.6162 32 1 2.8809 -3.7378 1.0176 33 1 3.5771 -4.9775 -1.7012 34 1 2.8092 -5.7613 -0.2801 35 1 4.0840 -5.6390 1.8894 36 1 4.5849 -7.2980 4.7397 37 1 7.1773 -4.6483 1.3256 38 1 7.0241 -2.8773 1.2343 39 1 5.8240 -3.8287 2.1412 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985964936.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:24:59 Heat of formation + Delta-G solvation = -1.673027 kcal Electronic energy + Delta-G solvation = -22121.831602 eV Core-core repulsion = 18838.714802 eV Total energy + Delta-G solvation = -3283.116800 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.70369 -39.68489 -37.42008 -34.08907 -33.29019 -32.12244 -31.44283 -30.71009 -29.01694 -27.01342 -25.22911 -23.46445 -23.04723 -21.77850 -21.06561 -20.04250 -18.95378 -17.56934 -17.06512 -16.52518 -15.95057 -15.47807 -14.78088 -14.58339 -13.88266 -13.75309 -13.52232 -13.42717 -13.17456 -13.12843 -13.08510 -12.77961 -12.58594 -12.37213 -12.03903 -11.53251 -11.29887 -10.87991 -10.85109 -10.62099 -10.47808 -10.20033 -10.08192 -10.03923 -9.85747 -9.64161 -8.96632 -8.60358 -8.19896 -7.05090 -5.82289 -3.11821 1.12165 2.30122 2.62331 3.31141 3.41583 3.42520 3.47210 3.47333 4.47439 4.54647 4.75392 4.86887 5.01563 5.11917 5.18960 5.29928 5.37836 5.44324 5.59220 5.60837 5.69209 5.76948 5.79981 5.86765 6.02984 6.09390 6.22885 6.32539 6.33670 6.43046 6.57003 6.65999 6.81295 6.88229 7.06995 7.34401 7.65001 7.80632 8.33152 8.35383 9.47067 10.00800 10.36198 11.39730 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.026815 B = 0.004433 C = 0.004220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.929761 B = 6314.899900 C = 6633.671828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.007 3.993 3 C -0.224 4.224 4 C -0.128 4.128 5 C -0.064 4.064 6 C 0.608 3.392 7 O -0.528 6.528 8 N -0.593 5.593 9 C 0.103 3.897 10 C -0.145 4.145 11 C 0.171 3.829 12 H 0.077 0.923 13 N -0.708 5.708 14 C -0.242 4.242 15 H 0.072 0.928 16 C -0.008 4.008 17 N -0.930 5.930 18 Si 0.906 3.094 19 H -0.292 1.292 20 H -0.286 1.286 21 H -0.285 1.285 22 C 0.108 3.892 23 H 0.063 0.937 24 C -0.133 4.133 25 O -0.156 6.156 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.090 0.910 29 H 0.153 0.847 30 H 0.158 0.842 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.385 0.615 36 H 0.256 0.744 37 H 0.071 0.929 38 H 0.039 0.961 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.869 12.512 -9.705 18.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.045 4.045 3 C -0.243 4.243 4 C -0.148 4.148 5 C -0.116 4.116 6 C 0.396 3.604 7 O -0.407 6.407 8 N -0.325 5.325 9 C -0.020 4.020 10 C -0.184 4.184 11 C 0.058 3.942 12 H 0.095 0.905 13 N -0.347 5.347 14 C -0.373 4.373 15 H 0.090 0.910 16 C -0.204 4.204 17 N -0.578 5.578 18 Si 0.736 3.264 19 H -0.217 1.217 20 H -0.212 1.212 21 H -0.212 1.212 22 C 0.003 3.997 23 H 0.081 0.919 24 C -0.191 4.191 25 O -0.052 6.052 26 H 0.102 0.898 27 H 0.099 0.901 28 H 0.108 0.892 29 H 0.170 0.830 30 H 0.175 0.825 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.106 0.894 35 H 0.219 0.781 36 H 0.066 0.934 37 H 0.090 0.910 38 H 0.058 0.942 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.210 12.332 -9.633 17.671 hybrid contribution 0.448 -0.239 0.706 0.869 sum -7.762 12.093 -8.927 16.917 Atomic orbital electron populations 1.20384 0.84779 1.04453 1.03724 1.22831 0.94347 0.84477 1.02849 1.21534 0.92400 0.99598 1.10769 1.21885 0.98491 0.92958 1.01514 1.22216 0.81865 0.94575 1.12945 1.16220 0.85882 0.80451 0.77847 1.90845 1.22054 1.75517 1.52330 1.48533 1.09540 1.04186 1.70210 1.22399 0.84907 0.93242 1.01445 1.23163 0.99889 0.95580 0.99781 1.21260 0.92842 0.91013 0.89083 0.90533 1.42329 1.29184 1.52634 1.10590 1.19156 1.02611 1.18334 0.97161 0.91041 1.24721 0.98163 1.00687 0.96851 1.69647 1.30868 1.47862 1.09415 0.86296 0.81182 0.80971 0.77902 1.21748 1.21236 1.21181 1.22840 0.88999 0.89216 0.98681 0.91868 1.21779 0.99793 1.00420 0.97139 1.84162 1.16099 1.34375 1.70515 0.89796 0.90084 0.89161 0.82955 0.82453 0.90776 0.91045 0.91022 0.89374 0.78061 0.93392 0.91012 0.94186 0.91679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.53 10.41 36.01 0.37 -0.15 16 2 C 0.01 0.08 7.31 -35.41 -0.26 -0.18 16 3 C -0.22 -2.51 10.77 -39.89 -0.43 -2.94 16 4 C -0.13 -1.77 10.62 -39.40 -0.42 -2.19 16 5 C -0.06 -1.02 6.93 -36.80 -0.25 -1.27 16 6 C 0.61 11.29 7.61 -12.86 -0.10 11.19 16 7 O -0.53 -11.08 16.01 5.19 0.08 -10.99 16 8 N -0.59 -10.61 3.06 -164.56 -0.50 -11.11 16 9 C 0.10 1.61 6.10 -2.53 -0.02 1.60 16 10 C -0.14 -2.22 6.69 -24.58 -0.16 -2.38 16 11 C 0.17 3.20 3.52 -66.10 -0.23 2.97 16 12 H 0.08 1.41 8.06 -51.92 -0.42 0.99 16 13 N -0.71 -16.46 3.91 -51.65 -0.20 -16.66 16 14 C -0.24 -6.28 8.40 -15.06 -0.13 -6.41 16 15 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 16 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 17 N -0.93 -27.11 13.06 55.49 0.72 -26.39 16 18 Si 0.91 21.83 29.55 -169.99 -5.02 16.80 16 19 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 C 0.11 2.04 3.44 -66.96 -0.23 1.81 16 23 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 24 C -0.13 -2.82 8.02 37.15 0.30 -2.53 16 25 O -0.16 -2.20 7.86 4.99 0.04 -2.16 16 26 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.15 1.24 8.06 -52.48 -0.42 0.82 16 30 H 0.16 2.02 8.06 -52.49 -0.42 1.60 16 31 H 0.07 1.04 6.21 -51.93 -0.32 0.71 16 32 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.39 9.67 7.84 -40.82 -0.32 9.35 16 36 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.07 1.57 7.11 -51.93 -0.37 1.20 16 38 H 0.04 0.84 7.08 -51.93 -0.37 0.47 16 39 H 0.06 1.54 7.63 -51.93 -0.40 1.15 16 LS Contribution 323.29 15.07 4.87 4.87 Total: -1.00 -30.97 323.29 -7.21 -38.18 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -5.55 Total: 8.25 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: -1.65 Total: -0.79 kcal Atomic # 7 Polarization: -54.18 SS G_CDS: 0.02 Total: -54.16 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: 0.12 Total: -13.16 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.97 -7.21 -38.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985964936.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.503 kcal (2) G-P(sol) polarization free energy of solvation -30.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds