Wall clock time and date at job start Tue Mar 31 2020 00:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35127 * 125.61654 * 2 1 4 4 C 1.40363 * 107.11422 * 179.97438 * 3 2 1 5 5 C 1.36539 * 106.70828 * 0.02562 * 4 3 2 6 6 C 1.46660 * 125.98774 * 179.97438 * 5 4 3 7 7 O 1.21697 * 120.00324 * 359.97438 * 6 5 4 8 8 N 1.34782 * 120.00272 * 180.02562 * 6 5 4 9 9 C 1.47424 * 125.64141 * 359.97438 * 8 6 5 10 10 C 1.54912 * 104.82652 * 155.90919 * 9 8 6 11 11 C 1.55150 * 101.58344 * 37.00688 * 10 9 8 12 12 H 1.09009 * 110.72012 * 205.95809 * 11 10 9 13 13 N 1.46500 * 110.72279 * 82.86348 * 11 10 9 14 14 C 1.36935 * 120.00024 * 150.88482 * 13 11 10 15 15 H 1.07999 * 120.00094 * 0.02562 * 14 13 11 16 16 C 1.38818 * 119.99895 * 179.97438 * 14 13 11 17 17 N 1.31620 * 119.99782 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00143 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47305 * 180.02562 * 18 16 14 20 20 H 1.48496 * 109.46959 * 300.00707 * 18 16 14 21 21 H 1.48498 * 109.46774 * 60.00234 * 18 16 14 22 22 C 1.47019 * 125.64779 * 180.02562 * 8 6 5 23 23 H 1.08996 * 109.88324 * 300.43335 * 22 8 6 24 24 C 1.52995 * 109.88421 * 61.60876 * 22 8 6 25 25 O 1.33931 * 125.61393 * 180.25340 * 2 1 3 26 26 H 1.08996 * 109.47265 * 89.99442 * 1 2 3 27 27 H 1.09004 * 109.46867 * 209.99833 * 1 2 3 28 28 H 1.09004 * 109.46554 * 329.98810 * 1 2 3 29 29 H 1.08005 * 126.44545 * 359.97438 * 3 2 1 30 30 H 1.08001 * 126.64552 * 180.02562 * 4 3 2 31 31 H 1.08992 * 110.37345 * 37.06876 * 9 8 6 32 32 H 1.08998 * 110.36617 * 274.74135 * 9 8 6 33 33 H 1.08996 * 111.00289 * 278.92891 * 10 9 8 34 34 H 1.09005 * 111.03333 * 155.09500 * 10 9 8 35 35 H 0.97004 * 119.99792 * 330.87965 * 13 11 10 36 36 H 0.97003 * 119.99624 * 180.02562 * 17 16 14 37 37 H 1.09002 * 109.47324 * 172.54134 * 24 22 8 38 38 H 1.09004 * 109.47034 * 292.54171 * 24 22 8 39 39 H 1.08997 * 109.47287 * 52.53348 * 24 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0985 0.0000 4 6 3.6250 0.6531 0.0006 5 6 3.5823 -0.7117 0.0004 6 6 4.7414 -1.6102 0.0003 7 8 5.8680 -1.1501 -0.0001 8 7 4.5590 -2.9456 -0.0005 9 6 3.2556 -3.6346 -0.0008 10 6 3.5440 -5.0281 -0.6129 11 6 4.9464 -5.3412 -0.0278 12 1 5.4903 -6.0282 -0.6763 13 7 4.8327 -5.8897 1.3259 14 6 5.7833 -6.7562 1.7957 15 1 6.6171 -7.0349 1.1684 16 6 5.6758 -7.2755 3.0786 17 7 4.6598 -6.9354 3.8431 18 14 6.9721 -8.4581 3.7192 19 1 6.6291 -8.8650 5.1056 20 1 7.0193 -9.6599 2.8483 21 1 8.2982 -7.7897 3.7127 22 6 5.6267 -3.9562 -0.0002 23 1 6.2535 -3.8336 -0.8834 24 6 6.4739 -3.8177 1.2663 25 8 2.2869 -1.0888 -0.0048 26 1 -0.3633 0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3632 0.8899 0.5141 29 1 1.9613 2.1260 -0.0004 30 1 4.5113 1.2702 0.0011 31 1 2.5391 -3.0908 -0.6162 32 1 2.8809 -3.7378 1.0176 33 1 3.5771 -4.9775 -1.7012 34 1 2.8092 -5.7613 -0.2801 35 1 4.0840 -5.6390 1.8894 36 1 4.5849 -7.2980 4.7397 37 1 7.1773 -4.6483 1.3256 38 1 7.0241 -2.8773 1.2343 39 1 5.8240 -3.8287 2.1412 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985964936.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:24:58 Heat of formation + Delta-G solvation = -21.055071 kcal Electronic energy + Delta-G solvation = -22122.672071 eV Core-core repulsion = 18838.714802 eV Total energy + Delta-G solvation = -3283.957269 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.71465 -41.12441 -38.91858 -35.82888 -34.30983 -33.42124 -32.81355 -32.19805 -30.68470 -28.02371 -26.87588 -25.31492 -24.35515 -22.86853 -22.15322 -21.33201 -20.37152 -19.39886 -18.47491 -17.71748 -17.32309 -16.74207 -16.30054 -16.02587 -15.45012 -15.33105 -15.17569 -14.55859 -14.38323 -14.10987 -14.07525 -13.91160 -13.80077 -13.66969 -13.18086 -13.06351 -12.76059 -12.75699 -12.46788 -12.32534 -12.24116 -11.87823 -11.72820 -11.53191 -11.31683 -11.04251 -10.92097 -9.85289 -9.39660 -9.01063 -7.91131 -5.18694 0.00347 1.35251 1.49689 1.51195 1.54805 1.56598 2.03683 2.12087 2.58183 3.36405 3.48080 3.65883 3.82473 3.87748 3.94021 4.03977 4.21781 4.34618 4.48244 4.52763 4.54697 4.62759 4.68408 4.75510 4.78657 4.81404 4.94498 4.96157 5.08222 5.14758 5.20133 5.24243 5.40186 5.49213 5.50246 5.58467 5.92532 6.29380 6.42131 6.93100 7.37661 8.09478 8.33789 9.31838 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.026815 B = 0.004433 C = 0.004220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.929761 B = 6314.899900 C = 6633.671828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.019 3.981 3 C -0.228 4.228 4 C -0.122 4.122 5 C -0.106 4.106 6 C 0.603 3.397 7 O -0.566 6.566 8 N -0.597 5.597 9 C 0.107 3.893 10 C -0.129 4.129 11 C 0.164 3.836 12 H 0.087 0.913 13 N -0.716 5.716 14 C -0.229 4.229 15 H 0.079 0.921 16 C -0.069 4.069 17 N -0.968 5.968 18 Si 0.963 3.037 19 H -0.301 1.301 20 H -0.276 1.276 21 H -0.283 1.283 22 C 0.112 3.888 23 H 0.075 0.925 24 C -0.118 4.118 25 O -0.167 6.167 26 H 0.105 0.895 27 H 0.083 0.917 28 H 0.115 0.885 29 H 0.187 0.813 30 H 0.160 0.840 31 H 0.097 0.903 32 H 0.054 0.946 33 H 0.103 0.897 34 H 0.091 0.909 35 H 0.374 0.626 36 H 0.248 0.752 37 H 0.060 0.940 38 H 0.033 0.967 39 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.480 13.431 -11.445 20.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.034 4.034 3 C -0.247 4.247 4 C -0.142 4.142 5 C -0.157 4.157 6 C 0.393 3.607 7 O -0.448 6.448 8 N -0.328 5.328 9 C -0.014 4.014 10 C -0.167 4.167 11 C 0.053 3.947 12 H 0.105 0.895 13 N -0.354 5.354 14 C -0.361 4.361 15 H 0.097 0.903 16 C -0.261 4.261 17 N -0.618 5.618 18 Si 0.793 3.207 19 H -0.227 1.227 20 H -0.202 1.202 21 H -0.210 1.210 22 C 0.006 3.994 23 H 0.093 0.907 24 C -0.176 4.176 25 O -0.064 6.064 26 H 0.123 0.877 27 H 0.102 0.898 28 H 0.134 0.866 29 H 0.204 0.796 30 H 0.178 0.822 31 H 0.115 0.885 32 H 0.072 0.928 33 H 0.122 0.878 34 H 0.110 0.890 35 H 0.206 0.794 36 H 0.057 0.943 37 H 0.079 0.921 38 H 0.052 0.948 39 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -9.823 13.251 -11.428 20.067 hybrid contribution 0.869 -0.376 1.176 1.510 sum -8.954 12.875 -10.252 18.736 Atomic orbital electron populations 1.20666 0.81346 1.05854 1.05458 1.23823 0.96092 0.83697 0.99755 1.21915 0.90866 1.01329 1.10546 1.22186 1.00111 0.92346 0.99589 1.21744 0.82081 0.94642 1.17269 1.16590 0.86449 0.80694 0.76959 1.90801 1.23704 1.76182 1.54111 1.48566 1.09898 1.04135 1.70156 1.22433 0.84369 0.93635 1.01006 1.23097 0.97258 0.94999 1.01395 1.21485 0.95385 0.90619 0.87184 0.89519 1.42437 1.28251 1.52468 1.12242 1.19515 1.02585 1.17080 0.96904 0.90315 1.25402 1.00134 1.03052 0.97558 1.69796 1.32885 1.49767 1.09393 0.85367 0.79021 0.79477 0.76835 1.22742 1.20205 1.21002 1.22651 0.89294 0.89819 0.97631 0.90747 1.21582 0.99192 0.99572 0.97255 1.84121 1.15534 1.35721 1.70981 0.87684 0.89814 0.86618 0.79600 0.82229 0.88514 0.92799 0.87828 0.89049 0.79401 0.94276 0.92110 0.94758 0.94844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 10.41 71.24 0.74 0.00 16 2 C 0.02 0.37 7.31 24.97 0.18 0.55 16 3 C -0.23 -4.44 10.77 22.07 0.24 -4.21 16 4 C -0.12 -3.23 10.62 22.39 0.24 -3.00 16 5 C -0.11 -3.33 6.93 24.07 0.17 -3.17 16 6 C 0.60 22.67 7.61 86.44 0.66 23.33 16 7 O -0.57 -24.38 16.01 -4.34 -0.07 -24.45 16 8 N -0.60 -21.29 3.06 -792.75 -2.43 -23.72 16 9 C 0.11 3.27 6.10 86.86 0.53 3.80 16 10 C -0.13 -3.67 6.69 31.98 0.21 -3.46 16 11 C 0.16 6.00 3.52 46.18 0.16 6.17 16 12 H 0.09 3.02 8.06 -2.38 -0.02 3.00 16 13 N -0.72 -33.48 3.91 -317.32 -1.24 -34.72 16 14 C -0.23 -11.94 8.40 84.04 0.71 -11.24 16 15 H 0.08 3.93 7.83 -2.91 -0.02 3.91 16 16 C -0.07 -3.83 5.50 84.86 0.47 -3.37 16 17 N -0.97 -57.83 13.06 21.65 0.28 -57.54 16 18 Si 0.96 45.42 29.55 68.60 2.03 47.45 16 19 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 20 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 21 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 22 C 0.11 4.20 3.44 45.34 0.16 4.36 16 23 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 24 C -0.12 -5.15 8.02 71.98 0.58 -4.57 16 25 O -0.17 -4.47 7.86 -5.05 -0.04 -4.51 16 26 H 0.10 0.65 8.14 -2.39 -0.02 0.64 16 27 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.19 2.25 8.06 -2.91 -0.02 2.23 16 30 H 0.16 4.04 8.06 -2.91 -0.02 4.01 16 31 H 0.10 2.52 6.21 -2.39 -0.01 2.51 16 32 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.09 2.61 8.14 -2.38 -0.02 2.59 16 35 H 0.37 19.16 7.84 -92.71 -0.73 18.43 16 36 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 37 H 0.06 2.72 7.11 -2.39 -0.02 2.71 16 38 H 0.03 1.49 7.08 -2.39 -0.02 1.48 16 39 H 0.03 1.64 7.63 -2.39 -0.02 1.62 16 Total: -1.00 -69.05 323.29 3.90 -65.15 By element: Atomic # 1 Polarization: 26.82 SS G_CDS: 0.33 Total: 27.15 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: 5.04 Total: 5.20 kcal Atomic # 7 Polarization: -112.60 SS G_CDS: -3.39 Total: -115.99 kcal Atomic # 8 Polarization: -28.85 SS G_CDS: -0.11 Total: -28.96 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -69.05 3.90 -65.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985964936.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.097 kcal (2) G-P(sol) polarization free energy of solvation -69.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds