Wall clock time and date at job start Tue Mar 31 2020 01:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.40365 * 126.64401 * 2 1 4 4 C 1.35134 * 107.11723 * 179.97438 * 3 2 1 5 5 O 1.33929 * 108.76543 * 359.97438 * 4 3 2 6 6 C 1.34918 * 109.38350 * 0.02562 * 5 4 3 7 7 C 1.46660 * 125.98589 * 180.02562 * 6 5 4 8 8 O 1.21696 * 119.99967 * 179.97438 * 7 6 5 9 9 N 1.34781 * 119.99937 * 359.97420 * 7 6 5 10 10 C 1.47418 * 125.65071 * 0.02795 * 9 7 6 11 11 C 1.54910 * 104.83507 * 204.08996 * 10 9 7 12 12 C 1.55158 * 101.57765 * 322.98955 * 11 10 9 13 13 H 1.09007 * 110.71905 * 154.04241 * 12 11 10 14 14 N 1.46500 * 110.71720 * 277.13517 * 12 11 10 15 15 C 1.36935 * 119.99688 * 209.44528 * 14 12 11 16 16 H 1.07994 * 120.00560 * 0.02562 * 15 14 12 17 17 C 1.38814 * 119.99962 * 180.02562 * 15 14 12 18 18 N 1.31624 * 120.00030 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 120.00299 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46731 * 90.00134 * 19 17 15 21 21 H 1.48497 * 109.46890 * 210.00150 * 19 17 15 22 22 H 1.48498 * 109.46857 * 330.00417 * 19 17 15 23 23 C 1.47021 * 125.64517 * 179.71388 * 9 7 6 24 24 H 1.08996 * 109.88652 * 59.56418 * 23 9 7 25 25 C 1.52999 * 109.88658 * 298.39442 * 23 9 7 26 26 H 1.09001 * 109.46916 * 270.02077 * 1 2 3 27 27 H 1.09000 * 109.47387 * 30.02498 * 1 2 3 28 28 H 1.09003 * 109.46510 * 150.02818 * 1 2 3 29 29 H 1.08000 * 126.44521 * 0.02562 * 3 2 1 30 30 H 1.08000 * 125.61645 * 180.26356 * 4 3 2 31 31 H 1.09004 * 110.36419 * 322.92413 * 10 9 7 32 32 H 1.08998 * 110.37099 * 85.24710 * 10 9 7 33 33 H 1.09006 * 111.00066 * 81.05881 * 11 10 9 34 34 H 1.08998 * 111.00487 * 204.91186 * 11 10 9 35 35 H 0.97001 * 120.00339 * 29.44914 * 14 12 11 36 36 H 0.96999 * 120.00011 * 179.97438 * 18 17 15 37 37 H 1.09008 * 109.47022 * 65.52529 * 25 23 9 38 38 H 1.08993 * 109.47592 * 185.52619 * 25 23 9 39 39 H 1.09002 * 109.47405 * 305.53321 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3447 1.1262 0.0000 4 6 3.6184 0.6746 0.0006 5 8 3.6006 -0.6646 0.0015 6 6 2.3220 -1.0954 0.0010 7 6 1.8843 -2.4952 0.0022 8 8 0.6969 -2.7614 0.0020 9 7 2.7973 -3.4867 0.0035 10 6 4.2605 -3.3074 0.0044 11 6 4.8209 -4.6165 -0.6055 12 6 3.8484 -5.6742 -0.0200 13 1 3.7953 -6.5495 -0.6674 14 7 4.2540 -6.0575 1.3346 15 6 3.9746 -7.3134 1.8033 16 1 3.4557 -8.0215 1.1743 17 6 4.3585 -7.6765 3.0869 18 7 4.9905 -6.8133 3.8538 19 14 3.9781 -9.3900 3.7262 20 1 5.1040 -10.3014 3.3994 21 1 3.7936 -9.3393 5.1988 22 1 2.7343 -9.8914 3.0884 23 6 2.4987 -4.9263 0.0108 24 1 1.9121 -5.1877 -0.8699 25 6 1.7273 -5.2914 1.2806 26 1 -0.3633 0.0004 1.0277 27 1 -0.3634 0.8897 -0.5142 28 1 -0.3632 -0.8903 -0.5134 29 1 2.0306 2.1595 0.0004 30 1 4.5046 1.2918 0.0048 31 1 4.5383 -2.4524 -0.6120 32 1 4.6261 -3.1766 1.0229 33 1 4.7658 -4.5952 -1.6940 34 1 5.8424 -4.7974 -0.2711 35 1 4.7204 -5.4216 1.8995 36 1 5.2584 -7.0669 4.7509 37 1 0.7512 -4.8063 1.2649 38 1 1.5951 -6.3723 1.3274 39 1 2.2858 -4.9555 2.1543 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985978583.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:13 Heat of formation + Delta-G solvation = -20.624824 kcal Electronic energy + Delta-G solvation = -22275.333967 eV Core-core repulsion = 18991.395355 eV Total energy + Delta-G solvation = -3283.938612 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -43.66131 -41.07303 -38.90729 -35.86451 -35.00855 -33.37773 -32.27288 -31.44842 -30.41987 -28.45431 -26.85280 -25.34588 -24.58962 -22.86089 -22.24705 -20.86627 -20.13375 -19.38195 -18.39363 -17.66137 -17.26491 -16.98517 -16.33827 -16.06549 -15.42886 -15.32707 -15.18256 -14.53979 -14.52663 -14.12601 -14.08609 -13.98860 -13.69477 -13.49058 -13.16444 -13.01571 -12.79428 -12.73062 -12.44761 -12.31171 -12.19949 -11.85885 -11.71056 -11.51690 -11.11906 -10.91582 -10.64918 -9.86387 -9.43704 -9.00343 -7.91094 -5.18488 0.06579 1.43814 1.49250 1.50362 1.57705 1.67120 2.09874 2.19177 2.58159 3.38978 3.56587 3.68115 3.82840 3.88553 3.93156 4.06481 4.24011 4.36472 4.50399 4.54343 4.60016 4.63565 4.69437 4.74892 4.80123 4.87472 4.97485 5.09612 5.12292 5.20785 5.23249 5.26045 5.40095 5.51272 5.53855 5.59330 5.96068 6.29732 6.47949 6.99684 7.37899 8.09911 8.34104 9.32110 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.028362 B = 0.004509 C = 0.004336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.983722 B = 6208.902152 C = 6456.165066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.097 4.097 3 C -0.233 4.233 4 C 0.008 3.992 5 O -0.169 6.169 6 C -0.114 4.114 7 C 0.602 3.398 8 O -0.559 6.559 9 N -0.598 5.598 10 C 0.108 3.892 11 C -0.129 4.129 12 C 0.163 3.837 13 H 0.086 0.914 14 N -0.716 5.716 15 C -0.227 4.227 16 H 0.079 0.921 17 C -0.070 4.070 18 N -0.968 5.968 19 Si 0.962 3.038 20 H -0.287 1.287 21 H -0.303 1.303 22 H -0.271 1.271 23 C 0.113 3.887 24 H 0.073 0.927 25 C -0.117 4.117 26 H 0.071 0.929 27 H 0.093 0.907 28 H 0.063 0.937 29 H 0.185 0.815 30 H 0.255 0.745 31 H 0.098 0.902 32 H 0.053 0.947 33 H 0.103 0.897 34 H 0.090 0.910 35 H 0.374 0.626 36 H 0.248 0.752 37 H 0.034 0.966 38 H 0.058 0.942 39 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.483 16.344 -11.501 20.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.101 4.101 3 C -0.252 4.252 4 C -0.061 4.061 5 O -0.064 6.064 6 C -0.165 4.165 7 C 0.392 3.608 8 O -0.441 6.441 9 N -0.330 5.330 10 C -0.014 4.014 11 C -0.168 4.168 12 C 0.053 3.947 13 H 0.104 0.896 14 N -0.354 5.354 15 C -0.359 4.359 16 H 0.097 0.903 17 C -0.262 4.262 18 N -0.619 5.619 19 Si 0.793 3.207 20 H -0.214 1.214 21 H -0.230 1.230 22 H -0.196 1.196 23 C 0.008 3.992 24 H 0.091 0.909 25 C -0.175 4.175 26 H 0.089 0.911 27 H 0.112 0.888 28 H 0.082 0.918 29 H 0.202 0.798 30 H 0.271 0.729 31 H 0.116 0.884 32 H 0.071 0.929 33 H 0.121 0.879 34 H 0.108 0.892 35 H 0.206 0.794 36 H 0.057 0.943 37 H 0.053 0.947 38 H 0.077 0.923 39 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -1.954 15.812 -11.492 19.645 hybrid contribution -0.171 -0.678 1.204 1.392 sum -2.125 15.134 -10.288 18.423 Atomic orbital electron populations 1.20405 0.88074 1.03603 1.02803 1.21006 0.98228 0.91709 0.99112 1.22072 0.92142 1.00579 1.10359 1.25398 1.01495 0.79943 0.99313 1.84174 1.27384 1.24059 1.70830 1.21614 0.82690 0.94004 1.18212 1.16592 0.84782 0.82393 0.77018 1.90772 1.16530 1.82972 1.53786 1.48558 1.07649 1.06276 1.70487 1.22421 0.78274 0.99769 1.00969 1.23097 0.99669 0.92676 1.01363 1.21498 0.90378 0.95755 0.87115 0.89627 1.42449 1.67925 1.12933 1.12119 1.19547 1.28977 0.90580 0.96779 0.90334 1.25397 1.02206 1.01043 0.97559 1.69801 1.46835 1.35975 1.09273 0.85300 0.77985 0.80747 0.76714 1.21427 1.22990 1.19648 1.22600 0.99866 0.79234 0.97528 0.90913 1.21572 0.97758 1.00877 0.97338 0.91053 0.88817 0.91842 0.79777 0.72873 0.88360 0.92872 0.87900 0.89165 0.79400 0.94297 0.94665 0.92344 0.94771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.22 9.82 71.24 0.70 -1.52 16 2 C -0.10 -2.53 6.20 -19.74 -0.12 -2.65 16 3 C -0.23 -4.18 10.83 22.07 0.24 -3.94 16 4 C 0.01 0.13 12.08 67.10 0.81 0.94 16 5 O -0.17 -4.22 7.86 -5.06 -0.04 -4.26 16 6 C -0.11 -3.49 6.93 24.07 0.17 -3.32 16 7 C 0.60 22.11 7.61 86.44 0.66 22.77 16 8 O -0.56 -23.13 13.85 -4.34 -0.06 -23.19 16 9 N -0.60 -21.06 3.06 -792.72 -2.43 -23.49 16 10 C 0.11 3.24 6.10 86.86 0.53 3.77 16 11 C -0.13 -3.68 6.69 31.99 0.21 -3.47 16 12 C 0.16 5.97 3.54 46.18 0.16 6.13 16 13 H 0.09 2.99 8.06 -2.38 -0.02 2.97 16 14 N -0.72 -33.47 3.84 -317.31 -1.22 -34.69 16 15 C -0.23 -11.84 8.49 84.03 0.71 -11.13 16 16 H 0.08 3.93 7.83 -2.91 -0.02 3.91 16 17 C -0.07 -3.87 5.50 84.86 0.47 -3.41 16 18 N -0.97 -57.89 13.06 21.65 0.28 -57.61 16 19 Si 0.96 45.47 29.55 68.60 2.03 47.49 16 20 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 21 H -0.30 -14.72 7.11 99.48 0.71 -14.02 16 22 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 23 C 0.11 4.24 3.43 45.34 0.16 4.39 16 24 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 25 C -0.12 -5.08 8.05 71.98 0.58 -4.50 16 26 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.06 1.83 6.44 -2.39 -0.02 1.82 16 29 H 0.18 2.03 8.06 -2.91 -0.02 2.01 16 30 H 0.26 1.38 8.06 -2.91 -0.02 1.35 16 31 H 0.10 2.50 6.22 -2.39 -0.01 2.48 16 32 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.10 2.34 8.14 -2.38 -0.02 2.32 16 34 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 35 H 0.37 19.16 7.84 -92.71 -0.73 18.43 16 36 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 37 H 0.03 1.52 7.01 -2.38 -0.02 1.50 16 38 H 0.06 2.60 7.25 -2.39 -0.02 2.58 16 39 H 0.03 1.67 7.55 -2.39 -0.02 1.65 16 Total: -1.00 -68.93 319.27 4.17 -64.76 By element: Atomic # 1 Polarization: 26.59 SS G_CDS: 0.34 Total: 26.92 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: 5.27 Total: 4.06 kcal Atomic # 7 Polarization: -112.43 SS G_CDS: -3.36 Total: -115.79 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -0.10 Total: -27.45 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.49 kcal Total: -68.93 4.17 -64.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985978583.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.135 kcal (2) G-P(sol) polarization free energy of solvation -68.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds