Wall clock time and date at job start Tue Mar 31 2020 01:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.40365 * 126.64429 * 2 1 4 4 C 1.35134 * 107.11324 * 180.02562 * 3 2 1 5 5 O 1.33924 * 108.76395 * 359.74919 * 4 3 2 6 6 C 1.34915 * 109.38947 * 0.40579 * 5 4 3 7 7 C 1.46658 * 125.99134 * 179.85969 * 6 5 4 8 8 O 1.21690 * 120.00474 * 179.69601 * 7 6 5 9 9 N 1.34787 * 119.99580 * 359.69222 * 7 6 5 10 10 C 1.47423 * 125.64737 * 359.97438 * 9 7 6 11 11 C 1.54918 * 104.82733 * 204.15865 * 10 9 7 12 12 C 1.55159 * 101.58370 * 322.99265 * 11 10 9 13 13 H 1.08994 * 110.71739 * 276.96297 * 12 11 10 14 14 N 1.46496 * 110.71853 * 153.86180 * 12 11 10 15 15 C 1.36945 * 119.99718 * 86.45499 * 14 12 11 16 16 H 1.07997 * 119.99756 * 359.97438 * 15 14 12 17 17 C 1.38805 * 119.99878 * 179.97438 * 15 14 12 18 18 N 1.31624 * 120.00257 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99929 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47187 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47141 * 300.00154 * 19 17 15 22 22 H 1.48498 * 109.47018 * 60.00200 * 19 17 15 23 23 C 1.47018 * 125.64413 * 180.02562 * 9 7 6 24 24 H 1.09005 * 109.88310 * 59.49289 * 23 9 7 25 25 C 1.52994 * 109.88641 * 298.32780 * 23 9 7 26 26 H 1.08995 * 109.46785 * 269.98102 * 1 2 3 27 27 H 1.09000 * 109.46688 * 29.97813 * 1 2 3 28 28 H 1.08998 * 109.47132 * 149.97810 * 1 2 3 29 29 H 1.07998 * 126.44412 * 0.02562 * 3 2 1 30 30 H 1.07999 * 125.61405 * 180.02562 * 4 3 2 31 31 H 1.08998 * 110.36461 * 85.32600 * 10 9 7 32 32 H 1.08996 * 110.36670 * 322.99798 * 10 9 7 33 33 H 1.08998 * 110.99995 * 204.91741 * 11 10 9 34 34 H 1.08999 * 111.03527 * 81.07956 * 11 10 9 35 35 H 0.96996 * 120.00499 * 266.45229 * 14 12 11 36 36 H 0.97001 * 119.99885 * 179.97438 * 18 17 15 37 37 H 1.09005 * 109.46936 * 302.19248 * 25 23 9 38 38 H 1.08996 * 109.47276 * 62.19074 * 25 23 9 39 39 H 1.08996 * 109.47618 * 182.19271 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3449 1.1262 0.0000 4 6 3.6184 0.6744 -0.0006 5 8 3.6005 -0.6647 0.0046 6 6 2.3220 -1.0955 -0.0004 7 6 1.8842 -2.4952 -0.0001 8 8 0.6968 -2.7615 0.0006 9 7 2.7972 -3.4868 -0.0006 10 6 4.2605 -3.3074 -0.0021 11 6 4.8196 -4.6157 -0.6152 12 6 3.8482 -5.6743 -0.0295 13 1 4.1535 -5.9633 0.9761 14 7 3.7720 -6.8475 -0.9034 15 6 4.6818 -7.8621 -0.7683 16 1 5.4556 -7.7971 -0.0178 17 6 4.6093 -8.9740 -1.5960 18 7 3.6665 -9.0530 -2.5111 19 14 5.8507 -10.3577 -1.4122 20 1 5.5577 -11.4210 -2.4066 21 1 7.2192 -9.8286 -1.6412 22 1 5.7616 -10.9239 -0.0423 23 6 2.4986 -4.9264 -0.0009 24 1 1.9135 -5.1834 -0.8840 25 6 1.7248 -5.2976 1.2656 26 1 -0.3633 -0.0003 1.0276 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3633 -0.8898 -0.5142 29 1 2.0307 2.1595 0.0004 30 1 4.5047 1.2917 -0.0003 31 1 4.6278 -3.1783 1.0159 32 1 4.5371 -2.4515 -0.6177 33 1 5.8417 -4.7971 -0.2828 34 1 4.7630 -4.5932 -1.7034 35 1 3.0772 -6.9058 -1.5777 36 1 3.6161 -9.8299 -3.0897 37 1 2.3089 -5.0193 2.1429 38 1 0.7734 -4.7660 1.2791 39 1 1.5410 -6.3719 1.2774 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985978585.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:19 Heat of formation + Delta-G solvation = -4.876065 kcal Electronic energy + Delta-G solvation = -21887.332201 eV Core-core repulsion = 18604.076507 eV Total energy + Delta-G solvation = -3283.255695 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.79916 -39.78067 -37.48636 -34.41906 -33.92019 -31.82940 -30.98483 -30.35542 -29.16882 -27.46162 -25.21210 -23.66375 -23.03496 -21.88463 -21.08232 -19.91856 -19.16765 -17.41124 -17.18086 -16.58919 -16.26459 -15.75284 -14.99935 -14.63958 -14.09790 -13.78070 -13.48743 -13.41368 -13.17013 -13.11054 -12.95054 -12.76051 -12.60436 -12.16843 -11.88868 -11.83404 -11.54617 -11.15714 -11.03908 -10.83114 -10.58459 -10.28324 -10.08087 -9.88164 -9.82323 -9.70147 -8.94954 -8.80429 -8.36301 -7.04137 -5.82018 -3.12721 1.02727 2.21896 2.62393 3.19098 3.25051 3.41335 3.46126 3.47094 4.47961 4.54249 4.65606 4.73299 5.04784 5.19981 5.33304 5.36618 5.41677 5.48733 5.57242 5.62562 5.64085 5.71327 5.79813 5.89903 5.99293 6.03568 6.07988 6.14721 6.31035 6.31750 6.44218 6.57616 6.59717 6.65136 6.84813 6.91975 7.64223 7.65597 8.19087 8.35273 9.46690 10.00781 10.35722 11.40081 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.035197 B = 0.003912 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.323887 B = 7155.742737 C = 7594.202020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.095 4.095 3 C -0.225 4.225 4 C -0.014 4.014 5 O -0.157 6.157 6 C -0.072 4.072 7 C 0.611 3.389 8 O -0.523 6.523 9 N -0.599 5.599 10 C 0.098 3.902 11 C -0.155 4.155 12 C 0.177 3.823 13 H 0.066 0.934 14 N -0.715 5.715 15 C -0.245 4.245 16 H 0.072 0.928 17 C -0.009 4.009 18 N -0.930 5.930 19 Si 0.909 3.091 20 H -0.291 1.291 21 H -0.285 1.285 22 H -0.285 1.285 23 C 0.128 3.872 24 H 0.081 0.919 25 C -0.155 4.155 26 H 0.072 0.928 27 H 0.064 0.936 28 H 0.087 0.913 29 H 0.153 0.847 30 H 0.208 0.792 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.386 0.614 36 H 0.257 0.743 37 H 0.051 0.949 38 H 0.062 0.938 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.759 19.943 6.237 20.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.098 4.098 3 C -0.244 4.244 4 C -0.083 4.083 5 O -0.053 6.053 6 C -0.124 4.124 7 C 0.400 3.600 8 O -0.402 6.402 9 N -0.331 5.331 10 C -0.024 4.024 11 C -0.196 4.196 12 C 0.065 3.935 13 H 0.084 0.916 14 N -0.355 5.355 15 C -0.376 4.376 16 H 0.090 0.910 17 C -0.206 4.206 18 N -0.578 5.578 19 Si 0.739 3.261 20 H -0.217 1.217 21 H -0.212 1.212 22 H -0.212 1.212 23 C 0.025 3.975 24 H 0.099 0.901 25 C -0.213 4.213 26 H 0.090 0.910 27 H 0.083 0.917 28 H 0.106 0.894 29 H 0.171 0.829 30 H 0.224 0.776 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.220 0.780 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.073 19.452 6.269 20.465 hybrid contribution 0.631 -0.390 -0.212 0.772 sum -0.442 19.062 6.057 20.006 Atomic orbital electron populations 1.20406 0.88297 1.03528 1.02760 1.20614 0.97642 0.90953 1.00617 1.21707 0.92497 0.99994 1.10252 1.24363 0.99858 0.81134 1.02991 1.84214 1.28381 1.22223 1.70450 1.21956 0.81365 0.94791 1.14247 1.16174 0.84999 0.81202 0.77671 1.90822 1.15296 1.82046 1.52003 1.48460 1.07163 1.06590 1.70877 1.22501 0.79181 0.99829 1.00939 1.23587 1.00669 0.93855 1.01538 1.21249 0.89936 0.87224 0.95100 0.91615 1.42338 1.36342 1.17175 1.39654 1.19157 1.07095 0.96428 1.14899 0.91022 1.24761 0.98779 0.98584 0.98435 1.69657 1.34517 1.30538 1.23041 0.86252 0.80748 0.81873 0.77186 1.21675 1.21200 1.21179 1.21964 0.98399 0.77941 0.99227 0.90103 1.22053 1.00389 1.02410 0.96433 0.90970 0.91691 0.89397 0.82903 0.77582 0.91591 0.90535 0.90447 0.90586 0.77961 0.93304 0.93018 0.91894 0.90905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.07 9.82 36.01 0.35 -0.71 16 2 C -0.10 -1.21 6.20 -104.43 -0.65 -1.85 16 3 C -0.23 -2.20 10.83 -39.89 -0.43 -2.63 16 4 C -0.01 -0.12 12.08 29.63 0.36 0.23 16 5 O -0.16 -1.95 7.86 5.01 0.04 -1.91 16 6 C -0.07 -1.04 6.93 -36.80 -0.25 -1.29 16 7 C 0.61 10.30 7.61 -12.86 -0.10 10.21 16 8 O -0.52 -9.81 13.79 5.20 0.07 -9.74 16 9 N -0.60 -9.89 3.06 -164.55 -0.50 -10.39 16 10 C 0.10 1.43 6.16 -2.53 -0.02 1.41 16 11 C -0.16 -2.62 6.77 -24.58 -0.17 -2.78 16 12 C 0.18 3.41 3.11 -66.10 -0.21 3.20 16 13 H 0.07 1.27 7.84 -51.93 -0.41 0.86 16 14 N -0.71 -17.34 5.25 -51.66 -0.27 -17.61 16 15 C -0.24 -6.55 9.98 -15.06 -0.15 -6.70 16 16 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 17 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 18 N -0.93 -27.59 13.06 55.49 0.72 -26.86 16 19 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 23 C 0.13 2.30 3.21 -66.96 -0.21 2.09 16 24 H 0.08 1.62 7.69 -51.93 -0.40 1.22 16 25 C -0.15 -2.60 9.10 37.15 0.34 -2.26 16 26 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.09 1.18 6.45 -51.93 -0.33 0.85 16 29 H 0.15 1.07 8.06 -52.49 -0.42 0.65 16 30 H 0.21 0.95 8.06 -52.49 -0.42 0.52 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.08 1.03 6.23 -51.93 -0.32 0.71 16 33 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 35 H 0.39 10.10 7.51 -40.82 -0.31 9.80 16 36 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 1.08 6.90 -51.93 -0.36 0.72 16 39 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 323.03 15.07 4.87 4.87 Total: -1.00 -31.04 323.03 -6.81 -37.85 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -5.48 Total: 8.39 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: -1.23 Total: -1.44 kcal Atomic # 7 Polarization: -54.82 SS G_CDS: -0.05 Total: -54.87 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.11 Total: -11.65 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.04 -6.81 -37.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985978585.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.974 kcal (2) G-P(sol) polarization free energy of solvation -31.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds