Wall clock time and date at job start Tue Mar 31 2020 01:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.40365 * 126.64429 * 2 1 4 4 C 1.35134 * 107.11324 * 180.02562 * 3 2 1 5 5 O 1.33924 * 108.76395 * 359.74919 * 4 3 2 6 6 C 1.34915 * 109.38947 * 0.40579 * 5 4 3 7 7 C 1.46658 * 125.99134 * 179.85969 * 6 5 4 8 8 O 1.21690 * 120.00474 * 179.69601 * 7 6 5 9 9 N 1.34787 * 119.99580 * 359.69222 * 7 6 5 10 10 C 1.47423 * 125.64737 * 359.97438 * 9 7 6 11 11 C 1.54918 * 104.82733 * 204.15865 * 10 9 7 12 12 C 1.55159 * 101.58370 * 322.99265 * 11 10 9 13 13 H 1.08994 * 110.71739 * 276.96297 * 12 11 10 14 14 N 1.46496 * 110.71853 * 153.86180 * 12 11 10 15 15 C 1.36945 * 119.99718 * 86.45499 * 14 12 11 16 16 H 1.07997 * 119.99756 * 359.97438 * 15 14 12 17 17 C 1.38805 * 119.99878 * 179.97438 * 15 14 12 18 18 N 1.31624 * 120.00257 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99929 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47187 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47141 * 300.00154 * 19 17 15 22 22 H 1.48498 * 109.47018 * 60.00200 * 19 17 15 23 23 C 1.47018 * 125.64413 * 180.02562 * 9 7 6 24 24 H 1.09005 * 109.88310 * 59.49289 * 23 9 7 25 25 C 1.52994 * 109.88641 * 298.32780 * 23 9 7 26 26 H 1.08995 * 109.46785 * 269.98102 * 1 2 3 27 27 H 1.09000 * 109.46688 * 29.97813 * 1 2 3 28 28 H 1.08998 * 109.47132 * 149.97810 * 1 2 3 29 29 H 1.07998 * 126.44412 * 0.02562 * 3 2 1 30 30 H 1.07999 * 125.61405 * 180.02562 * 4 3 2 31 31 H 1.08998 * 110.36461 * 85.32600 * 10 9 7 32 32 H 1.08996 * 110.36670 * 322.99798 * 10 9 7 33 33 H 1.08998 * 110.99995 * 204.91741 * 11 10 9 34 34 H 1.08999 * 111.03527 * 81.07956 * 11 10 9 35 35 H 0.96996 * 120.00499 * 266.45229 * 14 12 11 36 36 H 0.97001 * 119.99885 * 179.97438 * 18 17 15 37 37 H 1.09005 * 109.46936 * 302.19248 * 25 23 9 38 38 H 1.08996 * 109.47276 * 62.19074 * 25 23 9 39 39 H 1.08996 * 109.47618 * 182.19271 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3449 1.1262 0.0000 4 6 3.6184 0.6744 -0.0006 5 8 3.6005 -0.6647 0.0046 6 6 2.3220 -1.0955 -0.0004 7 6 1.8842 -2.4952 -0.0001 8 8 0.6968 -2.7615 0.0006 9 7 2.7972 -3.4868 -0.0006 10 6 4.2605 -3.3074 -0.0021 11 6 4.8196 -4.6157 -0.6152 12 6 3.8482 -5.6743 -0.0295 13 1 4.1535 -5.9633 0.9761 14 7 3.7720 -6.8475 -0.9034 15 6 4.6818 -7.8621 -0.7683 16 1 5.4556 -7.7971 -0.0178 17 6 4.6093 -8.9740 -1.5960 18 7 3.6665 -9.0530 -2.5111 19 14 5.8507 -10.3577 -1.4122 20 1 5.5577 -11.4210 -2.4066 21 1 7.2192 -9.8286 -1.6412 22 1 5.7616 -10.9239 -0.0423 23 6 2.4986 -4.9264 -0.0009 24 1 1.9135 -5.1834 -0.8840 25 6 1.7248 -5.2976 1.2656 26 1 -0.3633 -0.0003 1.0276 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3633 -0.8898 -0.5142 29 1 2.0307 2.1595 0.0004 30 1 4.5047 1.2917 -0.0003 31 1 4.6278 -3.1783 1.0159 32 1 4.5371 -2.4515 -0.6177 33 1 5.8417 -4.7971 -0.2828 34 1 4.7630 -4.5932 -1.7034 35 1 3.0772 -6.9058 -1.5777 36 1 3.6161 -9.8299 -3.0897 37 1 2.3089 -5.0193 2.1429 38 1 0.7734 -4.7660 1.2791 39 1 1.5410 -6.3719 1.2774 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985978585.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:17 Heat of formation + Delta-G solvation = -24.766861 kcal Electronic energy + Delta-G solvation = -21888.194731 eV Core-core repulsion = 18604.076507 eV Total energy + Delta-G solvation = -3284.118224 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -43.67003 -41.10892 -38.88317 -36.01194 -35.02937 -33.48602 -32.41986 -31.47467 -30.61640 -28.48310 -26.87805 -25.05519 -24.56465 -22.88582 -22.23005 -21.31118 -20.28742 -19.19432 -18.45778 -17.76057 -17.30293 -16.89426 -16.58579 -16.08096 -15.52202 -15.39119 -14.89802 -14.70114 -14.39972 -14.20227 -14.02376 -13.92101 -13.67224 -13.51130 -13.31104 -13.11122 -12.87091 -12.74574 -12.65037 -12.53718 -12.21537 -12.11499 -11.72753 -11.59515 -11.14216 -10.89936 -10.64883 -9.92141 -9.47663 -9.03632 -7.93381 -5.23989 0.04628 1.43592 1.49969 1.53011 1.58319 1.60380 2.07042 2.10109 2.58169 3.36152 3.47981 3.68750 3.78162 3.82982 3.93672 4.00627 4.15288 4.29716 4.37406 4.47497 4.55593 4.60980 4.65327 4.66384 4.76051 4.82186 4.90441 5.00591 5.12265 5.17568 5.18749 5.22493 5.28499 5.40385 5.50889 5.54737 5.94236 6.26325 6.40307 6.93129 7.33071 8.03921 8.28510 9.29935 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.035197 B = 0.003912 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.323887 B = 7155.742737 C = 7594.202020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.095 4.095 3 C -0.234 4.234 4 C 0.011 3.989 5 O -0.167 6.167 6 C -0.114 4.114 7 C 0.606 3.394 8 O -0.556 6.556 9 N -0.603 5.603 10 C 0.109 3.891 11 C -0.146 4.146 12 C 0.172 3.828 13 H 0.073 0.927 14 N -0.728 5.728 15 C -0.240 4.240 16 H 0.084 0.916 17 C -0.074 4.074 18 N -0.971 5.971 19 Si 0.974 3.026 20 H -0.300 1.300 21 H -0.275 1.275 22 H -0.277 1.277 23 C 0.134 3.866 24 H 0.051 0.949 25 C -0.144 4.144 26 H 0.077 0.923 27 H 0.090 0.910 28 H 0.060 0.940 29 H 0.184 0.816 30 H 0.256 0.744 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.055 0.945 35 H 0.371 0.629 36 H 0.250 0.750 37 H 0.068 0.932 38 H 0.055 0.945 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.225 22.649 7.577 23.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.098 4.098 3 C -0.253 4.253 4 C -0.058 4.058 5 O -0.063 6.063 6 C -0.165 4.165 7 C 0.397 3.603 8 O -0.437 6.437 9 N -0.335 5.335 10 C -0.013 4.013 11 C -0.187 4.187 12 C 0.063 3.937 13 H 0.091 0.909 14 N -0.368 5.368 15 C -0.371 4.371 16 H 0.102 0.898 17 C -0.266 4.266 18 N -0.622 5.622 19 Si 0.803 3.197 20 H -0.227 1.227 21 H -0.201 1.201 22 H -0.203 1.203 23 C 0.030 3.970 24 H 0.069 0.931 25 C -0.202 4.202 26 H 0.096 0.904 27 H 0.109 0.891 28 H 0.079 0.921 29 H 0.201 0.799 30 H 0.272 0.728 31 H 0.107 0.893 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.074 0.926 35 H 0.203 0.797 36 H 0.059 0.941 37 H 0.087 0.913 38 H 0.074 0.926 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.945 22.206 7.652 23.507 hybrid contribution 0.003 -1.027 -0.597 1.188 sum 0.948 21.179 7.056 22.343 Atomic orbital electron populations 1.20418 0.88121 1.03436 1.03054 1.21007 0.98199 0.91728 0.98840 1.22075 0.92191 1.00573 1.10412 1.25406 1.01458 0.79907 0.99027 1.84170 1.27233 1.24031 1.70844 1.21476 0.82767 0.93665 1.18596 1.16556 0.84622 0.82323 0.76834 1.90792 1.16554 1.82919 1.53463 1.48484 1.08126 1.05672 1.71214 1.22528 0.77689 0.98772 1.02280 1.23402 1.00811 0.94169 1.00287 1.21418 0.91327 0.86405 0.94584 0.90892 1.42501 1.35675 1.18451 1.40147 1.19590 1.06925 0.96543 1.14044 0.89826 1.25580 1.00932 1.01299 0.98797 1.69832 1.36796 1.31055 1.24481 0.85199 0.78781 0.78689 0.76997 1.22665 1.20119 1.20296 1.21691 0.97437 0.79358 0.98542 0.93117 1.21941 1.00144 1.01647 0.96484 0.90439 0.89087 0.92115 0.79853 0.72786 0.89300 0.89046 0.88939 0.92606 0.79666 0.94081 0.91342 0.92618 0.91784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.06 9.82 71.24 0.70 -1.36 16 2 C -0.09 -2.23 6.20 -19.74 -0.12 -2.35 16 3 C -0.23 -3.65 10.83 22.07 0.24 -3.41 16 4 C 0.01 0.15 12.08 67.10 0.81 0.96 16 5 O -0.17 -3.65 7.86 -4.99 -0.04 -3.69 16 6 C -0.11 -3.16 6.93 24.07 0.17 -2.99 16 7 C 0.61 20.67 7.61 86.44 0.66 21.32 16 8 O -0.56 -21.75 13.79 -4.32 -0.06 -21.81 16 9 N -0.60 -19.89 3.06 -792.73 -2.43 -22.32 16 10 C 0.11 2.98 6.16 86.86 0.54 3.51 16 11 C -0.15 -4.78 6.77 31.99 0.22 -4.56 16 12 C 0.17 6.66 3.11 46.18 0.14 6.80 16 13 H 0.07 2.73 7.84 -2.39 -0.02 2.71 16 14 N -0.73 -36.14 5.25 -317.34 -1.67 -37.80 16 15 C -0.24 -12.85 9.98 84.03 0.84 -12.01 16 16 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 17 C -0.07 -4.16 5.50 84.86 0.47 -3.70 16 18 N -0.97 -59.35 13.06 21.65 0.28 -59.06 16 19 Si 0.97 45.25 29.55 68.60 2.03 47.28 16 20 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 21 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 22 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 23 C 0.13 4.95 3.21 45.34 0.15 5.10 16 24 H 0.05 2.17 7.69 -2.38 -0.02 2.15 16 25 C -0.14 -4.93 9.10 71.98 0.65 -4.28 16 26 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.06 1.68 6.45 -2.39 -0.02 1.67 16 29 H 0.18 1.66 8.06 -2.91 -0.02 1.63 16 30 H 0.26 0.70 8.06 -2.91 -0.02 0.68 16 31 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.09 2.26 6.23 -2.39 -0.01 2.25 16 33 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 34 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.37 20.36 7.51 -92.71 -0.70 19.67 16 36 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 37 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 38 H 0.05 1.98 6.90 -2.39 -0.02 1.96 16 39 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -69.79 323.03 3.93 -65.85 By element: Atomic # 1 Polarization: 28.16 SS G_CDS: 0.36 Total: 28.53 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: 5.45 Total: 3.04 kcal Atomic # 7 Polarization: -115.37 SS G_CDS: -3.81 Total: -119.18 kcal Atomic # 8 Polarization: -25.41 SS G_CDS: -0.10 Total: -25.51 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -69.79 3.93 -65.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985978585.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.087 kcal (2) G-P(sol) polarization free energy of solvation -69.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds