Wall clock time and date at job start Tue Mar 31 2020 00:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34179 * 125.44100 * 2 1 4 4 C 1.47019 * 105.95572 * 179.97438 * 3 2 1 5 5 C 1.47378 * 127.19412 * 180.09282 * 4 3 2 6 6 O 1.21621 * 119.99796 * 7.38490 * 5 4 3 7 7 N 1.34772 * 120.00213 * 187.38197 * 5 4 3 8 8 C 1.47420 * 125.64839 * 5.61486 * 7 5 4 9 9 C 1.54913 * 104.83185 * 155.83179 * 8 7 5 10 10 C 1.55161 * 101.58298 * 37.01242 * 9 8 7 11 11 H 1.08991 * 110.72056 * 82.85847 * 10 9 8 12 12 N 1.46491 * 110.71802 * 206.13655 * 10 9 8 13 13 C 1.36948 * 119.99978 * 273.53980 * 12 10 9 14 14 H 1.08002 * 119.99727 * 0.02562 * 13 12 10 15 15 C 1.38812 * 120.00064 * 180.02562 * 13 12 10 16 16 N 1.31614 * 119.99540 * 180.02562 * 15 13 12 17 17 Si 1.86802 * 119.99914 * 359.97438 * 15 13 12 18 18 H 1.48493 * 109.46866 * 90.00406 * 17 15 13 19 19 H 1.48504 * 109.46866 * 210.00302 * 17 15 13 20 20 H 1.48500 * 109.47348 * 329.99930 * 17 15 13 21 21 C 1.47023 * 125.64746 * 185.30191 * 7 5 4 22 22 H 1.08995 * 109.88930 * 300.51585 * 21 7 5 23 23 C 1.52999 * 109.88380 * 61.68248 * 21 7 5 24 24 C 1.36418 * 105.61810 * 0.33012 * 4 3 2 25 25 O 1.33660 * 108.39344 * 359.80068 * 24 4 3 26 26 H 1.08996 * 109.47056 * 179.72261 * 1 2 3 27 27 H 1.08993 * 109.47066 * 59.71579 * 1 2 3 28 28 H 1.09001 * 109.46736 * 299.71447 * 1 2 3 29 29 H 1.07996 * 127.01952 * 359.97438 * 3 2 1 30 30 H 1.08998 * 110.37178 * 274.67062 * 8 7 5 31 31 H 1.08997 * 110.37083 * 36.99462 * 8 7 5 32 32 H 1.09007 * 111.00146 * 155.08202 * 9 8 7 33 33 H 1.09002 * 111.00633 * 278.89494 * 9 8 7 34 34 H 0.97000 * 120.00445 * 93.54718 * 12 10 9 35 35 H 0.97007 * 119.99548 * 179.97438 * 16 15 13 36 36 H 1.09005 * 109.47057 * 58.53934 * 23 21 7 37 37 H 1.08996 * 109.47924 * 178.54139 * 23 21 7 38 38 H 1.09003 * 109.47038 * 298.55045 * 23 21 7 39 39 H 1.07995 * 125.80859 * 179.81767 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2850 1.0932 0.0000 4 6 3.6710 0.6028 0.0006 5 6 4.9025 1.4124 0.0028 6 8 4.8367 2.6190 0.1396 7 7 6.1016 0.8156 -0.1469 8 6 6.3199 -0.6133 -0.4369 9 6 7.7139 -0.6727 -1.1099 10 6 8.4890 0.4132 -0.3177 11 1 8.8718 0.0077 0.6188 12 7 9.5766 0.9680 -1.1272 13 6 10.8006 0.3539 -1.1426 14 1 10.9638 -0.5396 -0.5584 15 6 11.8313 0.8800 -1.9093 16 7 13.0075 0.2895 -1.9245 17 14 11.5486 2.4250 -2.9204 18 1 11.8807 3.6193 -2.1027 19 1 12.4158 2.3935 -4.1255 20 1 10.1247 2.4905 -3.3369 21 6 7.4083 1.4829 -0.0543 22 1 7.4754 2.2724 -0.8028 23 6 7.5937 2.0720 1.3455 24 6 3.5790 -0.7583 -0.0066 25 8 2.2851 -1.0935 -0.0069 26 1 -0.3633 -1.0276 -0.0050 27 1 -0.3633 0.5182 -0.8874 28 1 -0.3633 0.5094 0.8926 29 1 1.9595 2.1229 -0.0004 30 1 6.3195 -1.1923 0.4866 31 1 5.5538 -0.9835 -1.1180 32 1 8.1704 -1.6537 -0.9770 33 1 7.6489 -0.4144 -2.1669 34 1 9.4299 1.7703 -1.6522 35 1 13.7277 0.6569 -2.4605 36 1 7.5188 1.2768 2.0873 37 1 8.5746 2.5424 1.4150 38 1 6.8197 2.8166 1.5318 39 1 4.4102 -1.4477 -0.0111 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986193932.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:08 Heat of formation + Delta-G solvation = 3.811528 kcal Electronic energy + Delta-G solvation = -21647.292664 eV Core-core repulsion = 18364.413692 eV Total energy + Delta-G solvation = -3282.878972 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.75004 -39.94560 -37.45131 -34.38636 -33.29194 -32.62221 -31.44114 -30.98094 -29.56307 -26.97921 -25.46745 -24.26271 -22.84825 -21.81653 -20.96911 -20.28070 -19.11260 -17.65762 -17.06459 -16.65344 -16.39558 -16.06212 -15.18718 -14.60098 -14.14325 -14.05259 -13.63193 -13.50213 -13.46002 -13.33979 -13.03718 -12.82893 -12.76017 -12.38485 -12.17949 -12.03086 -11.73543 -11.32930 -11.25141 -10.92146 -10.68921 -10.41382 -10.10390 -9.90050 -9.83815 -9.65455 -9.00771 -8.78039 -8.54269 -7.37643 -5.84819 -3.22316 1.22692 1.86156 2.60396 3.00465 3.34737 3.36517 3.38474 3.43066 4.30265 4.46693 4.53132 4.67485 4.81500 4.91329 5.05368 5.10096 5.11226 5.24276 5.29480 5.34143 5.42215 5.55019 5.56095 5.60582 5.71549 5.79821 5.84613 5.95520 6.14100 6.15487 6.29628 6.45618 6.48104 6.58391 6.75996 6.81357 7.61432 7.88960 8.26301 8.33648 9.10218 9.82924 10.01003 11.32849 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.034836 B = 0.003841 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.575100 B = 7287.159557 C = 7544.908358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.019 4.019 3 C -0.164 4.164 4 C -0.223 4.223 5 C 0.598 3.402 6 O -0.539 6.539 7 N -0.606 5.606 8 C 0.084 3.916 9 C -0.154 4.154 10 C 0.182 3.818 11 H 0.076 0.924 12 N -0.739 5.739 13 C -0.249 4.249 14 H 0.093 0.907 15 C 0.010 3.990 16 N -0.930 5.930 17 Si 0.882 3.118 18 H -0.282 1.282 19 H -0.290 1.290 20 H -0.277 1.277 21 C 0.126 3.874 22 H 0.076 0.924 23 C -0.156 4.156 24 C 0.006 3.994 25 O -0.175 6.175 26 H 0.076 0.924 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.158 0.842 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.363 0.637 35 H 0.261 0.739 36 H 0.054 0.946 37 H 0.072 0.928 38 H 0.061 0.939 39 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.155 -3.390 4.576 23.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.068 4.068 3 C -0.183 4.183 4 C -0.227 4.227 5 C 0.388 3.612 6 O -0.418 6.418 7 N -0.340 5.340 8 C -0.039 4.039 9 C -0.195 4.195 10 C 0.071 3.929 11 H 0.093 0.907 12 N -0.381 5.381 13 C -0.378 4.378 14 H 0.110 0.890 15 C -0.187 4.187 16 N -0.577 5.577 17 Si 0.712 3.288 18 H -0.209 1.209 19 H -0.216 1.216 20 H -0.203 1.203 21 C 0.023 3.977 22 H 0.094 0.906 23 C -0.214 4.214 24 C -0.063 4.063 25 O -0.071 6.071 26 H 0.095 0.905 27 H 0.104 0.896 28 H 0.104 0.896 29 H 0.175 0.825 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.095 0.905 34 H 0.197 0.803 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -23.141 -3.124 4.695 23.818 hybrid contribution 0.139 1.164 -0.870 1.460 sum -23.002 -1.960 3.825 23.400 Atomic orbital electron populations 1.20317 0.84743 1.04080 1.03770 1.22314 0.94150 0.83747 1.06590 1.22459 0.89971 0.99705 1.06207 1.21491 0.94534 0.93316 1.13368 1.16883 0.81091 0.86521 0.76703 1.90767 1.86451 1.13869 1.50671 1.48371 1.05312 1.10235 1.70037 1.22727 0.99441 0.82083 0.99622 1.23553 0.92764 1.02260 1.00924 1.21222 0.86662 0.90466 0.94575 0.90665 1.42707 1.09522 1.31583 1.54289 1.19014 0.85969 1.08510 1.24324 0.88967 1.24657 0.95550 0.98595 0.99874 1.69695 1.02329 1.41310 1.44360 0.86598 0.77354 0.84399 0.80470 1.20878 1.21620 1.20275 1.21918 0.81552 0.96080 0.98173 0.90596 1.22063 1.02682 1.01125 0.95528 1.25229 0.84063 0.96033 1.00998 1.83754 1.16639 1.35497 1.71209 0.90453 0.89577 0.89570 0.82461 0.91086 0.90730 0.89838 0.90512 0.80315 0.92912 0.92679 0.90920 0.92035 0.76291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.42 10.40 36.00 0.37 -0.04 16 2 C -0.02 -0.19 7.28 -35.74 -0.26 -0.45 16 3 C -0.16 -1.97 10.91 -37.45 -0.41 -2.38 16 4 C -0.22 -2.99 6.24 -103.28 -0.64 -3.63 16 5 C 0.60 9.73 7.59 -12.54 -0.10 9.64 16 6 O -0.54 -10.55 16.24 5.26 0.09 -10.46 16 7 N -0.61 -9.14 3.07 -164.29 -0.50 -9.64 16 8 C 0.08 1.01 5.13 -2.53 -0.01 1.00 16 9 C -0.15 -2.33 6.76 -24.58 -0.17 -2.49 16 10 C 0.18 3.26 3.11 -66.10 -0.21 3.06 16 11 H 0.08 1.36 7.84 -51.93 -0.41 0.95 16 12 N -0.74 -16.65 5.05 -51.66 -0.26 -16.91 16 13 C -0.25 -6.67 10.46 -15.05 -0.16 -6.83 16 14 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 15 C 0.01 0.27 5.50 -17.43 -0.10 0.18 16 16 N -0.93 -28.43 13.97 55.49 0.78 -27.66 16 17 Si 0.88 21.74 27.74 -169.99 -4.71 17.03 16 18 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 19 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 20 H -0.28 -6.49 6.52 56.52 0.37 -6.12 16 21 C 0.13 2.13 3.18 -66.95 -0.21 1.91 16 22 H 0.08 1.42 7.68 -51.93 -0.40 1.02 16 23 C -0.16 -2.48 9.10 37.16 0.34 -2.14 16 24 C 0.01 0.07 10.44 30.08 0.31 0.38 16 25 O -0.17 -1.86 10.52 7.62 0.08 -1.78 16 26 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.16 1.77 8.06 -52.49 -0.42 1.35 16 30 H 0.07 0.69 7.76 -51.93 -0.40 0.29 16 31 H 0.07 0.74 5.98 -51.93 -0.31 0.43 16 32 H 0.08 1.20 8.14 -51.92 -0.42 0.78 16 33 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.36 8.27 5.36 -40.82 -0.22 8.05 16 35 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 36 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.06 1.02 7.06 -51.93 -0.37 0.66 16 39 H 0.22 1.71 4.87 -52.49 -0.26 1.46 16 LS Contribution 321.39 15.07 4.84 4.84 Total: -1.00 -33.36 321.39 -6.26 -39.62 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -5.33 Total: 6.77 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: -1.23 Total: -1.80 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: 0.01 Total: -54.21 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: 0.17 Total: -12.25 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.71 Total: 17.03 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.36 -6.26 -39.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986193932.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.428 kcal (2) G-P(sol) polarization free energy of solvation -33.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds