Wall clock time and date at job start Tue Mar 31 2020 00:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34173 * 125.43777 * 2 1 4 4 C 1.47026 * 105.95496 * 180.12283 * 3 2 1 5 5 C 1.47378 * 127.19258 * 179.88815 * 4 3 2 6 6 O 1.21605 * 119.99963 * 186.15151 * 5 4 3 7 7 N 1.34780 * 120.00046 * 6.15527 * 5 4 3 8 8 C 1.47424 * 125.64526 * 5.37713 * 7 5 4 9 9 C 1.54916 * 104.82852 * 155.84125 * 8 7 5 10 10 C 1.55156 * 101.57953 * 37.00786 * 9 8 7 11 11 H 1.09004 * 110.72009 * 205.95709 * 10 9 8 12 12 N 1.46498 * 110.71797 * 82.86492 * 10 9 8 13 13 C 1.36939 * 120.00351 * 152.50515 * 12 10 9 14 14 H 1.08002 * 119.99877 * 359.97438 * 13 12 10 15 15 C 1.38806 * 120.00129 * 179.97438 * 13 12 10 16 16 N 1.31614 * 120.00384 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99892 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47067 * 269.99843 * 17 15 13 19 19 H 1.48497 * 109.47184 * 29.99794 * 17 15 13 20 20 H 1.48501 * 109.46954 * 150.00055 * 17 15 13 21 21 C 1.47014 * 125.64564 * 185.34379 * 7 5 4 22 22 H 1.09000 * 109.88447 * 300.50682 * 21 7 5 23 23 C 1.53004 * 109.88471 * 61.67735 * 21 7 5 24 24 C 1.36414 * 105.61367 * 359.62417 * 4 3 2 25 25 O 1.33657 * 108.39807 * 0.22923 * 24 4 3 26 26 H 1.08995 * 109.46925 * 180.27163 * 1 2 3 27 27 H 1.09005 * 109.47257 * 300.27175 * 1 2 3 28 28 H 1.08997 * 109.46799 * 60.27199 * 1 2 3 29 29 H 1.08002 * 127.02456 * 0.02562 * 3 2 1 30 30 H 1.08996 * 110.36693 * 37.01167 * 8 7 5 31 31 H 1.09000 * 110.37078 * 274.67781 * 8 7 5 32 32 H 1.09001 * 111.00182 * 278.93974 * 9 8 7 33 33 H 1.08993 * 111.00735 * 155.08565 * 9 8 7 34 34 H 0.97002 * 120.00254 * 332.50301 * 12 10 9 35 35 H 0.97005 * 120.00275 * 180.02562 * 16 15 13 36 36 H 1.09001 * 109.47150 * 178.04390 * 23 21 7 37 37 H 1.08995 * 109.46736 * 298.04112 * 23 21 7 38 38 H 1.09000 * 109.47222 * 58.04153 * 23 21 7 39 39 H 1.07994 * 125.79962 * 180.22303 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0932 0.0000 4 6 3.6711 0.6028 -0.0030 5 6 4.9025 1.4125 -0.0065 6 8 5.9855 0.8715 -0.1216 7 7 4.8284 2.7525 0.1181 8 6 3.5993 3.5246 0.3759 9 6 4.0878 4.8399 1.0326 10 6 5.4038 5.1062 0.2551 11 1 6.0936 5.6988 0.8560 12 7 5.1266 5.7720 -1.0201 13 6 6.0721 6.5831 -1.5888 14 1 7.0220 6.7322 -1.0971 15 6 5.8096 7.2135 -2.7973 16 7 4.6519 7.0321 -3.3964 17 14 7.0992 8.3204 -3.5727 18 1 6.9116 9.7123 -3.0902 19 1 8.4535 7.8435 -3.1938 20 1 6.9576 8.2855 -5.0506 21 6 5.9599 3.6860 0.0200 22 1 6.7035 3.4484 0.7807 23 6 6.5885 3.5972 -1.3721 24 6 3.5790 -0.7582 0.0041 25 8 2.2852 -1.0935 0.0057 26 1 -0.3633 -1.0276 0.0049 27 1 -0.3634 0.5181 0.8876 28 1 -0.3633 0.5096 -0.8924 29 1 1.9596 2.1230 0.0004 30 1 2.9454 2.9805 1.0574 31 1 3.0815 3.7372 -0.5594 32 1 4.2841 4.6966 2.0952 33 1 3.3707 5.6454 0.8746 34 1 4.2733 5.6384 -1.4617 35 1 4.4686 7.4724 -4.2411 36 1 7.4041 4.3163 -1.4490 37 1 6.9751 2.5908 -1.5326 38 1 5.8343 3.8213 -2.1264 39 1 4.4103 -1.4476 0.0076 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986193934.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:12 Heat of formation + Delta-G solvation = 2.312448 kcal Electronic energy + Delta-G solvation = -22058.137227 eV Core-core repulsion = 18775.193250 eV Total energy + Delta-G solvation = -3282.943977 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.58549 -39.67859 -37.30845 -34.11423 -33.19283 -32.09543 -31.27833 -30.62999 -28.73906 -26.81039 -25.29084 -24.02024 -23.35488 -21.64862 -21.22185 -19.22481 -18.48737 -17.51354 -17.03637 -16.40238 -16.26679 -15.72391 -14.82940 -14.58388 -13.90464 -13.76821 -13.53464 -13.46762 -13.30395 -13.21378 -13.02253 -12.80903 -12.52930 -12.12924 -11.90819 -11.47877 -11.31294 -10.87240 -10.86521 -10.61274 -10.41082 -10.14814 -10.03221 -9.77601 -9.65283 -9.57385 -8.96255 -8.64507 -8.15298 -7.04290 -5.82582 -3.11812 1.44105 2.00777 2.77537 3.38142 3.41321 3.47394 3.48246 3.60322 4.43279 4.54635 4.76637 4.91131 5.00450 5.10689 5.24316 5.28748 5.33399 5.39143 5.52086 5.58174 5.64729 5.72750 5.83925 5.89367 5.98958 6.11498 6.24358 6.27749 6.32076 6.46436 6.59897 6.67971 6.85823 6.96708 7.09325 7.38044 7.66025 7.95444 8.34841 8.53153 9.47166 10.00830 10.36220 11.39598 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.025334 B = 0.004433 C = 0.004217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.969299 B = 6314.192998 C = 6638.715122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.019 4.019 3 C -0.194 4.194 4 C -0.226 4.226 5 C 0.598 3.402 6 O -0.552 6.552 7 N -0.595 5.595 8 C 0.098 3.902 9 C -0.147 4.147 10 C 0.170 3.830 11 H 0.074 0.926 12 N -0.709 5.709 13 C -0.239 4.239 14 H 0.072 0.928 15 C -0.008 4.008 16 N -0.931 5.931 17 Si 0.905 3.095 18 H -0.290 1.290 19 H -0.281 1.281 20 H -0.292 1.292 21 C 0.109 3.891 22 H 0.060 0.940 23 C -0.134 4.134 24 C 0.038 3.962 25 O -0.177 6.177 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.166 0.834 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.385 0.615 35 H 0.255 0.745 36 H 0.065 0.935 37 H 0.037 0.963 38 H 0.069 0.931 39 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.447 -12.109 9.410 17.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.067 4.067 3 C -0.213 4.213 4 C -0.230 4.230 5 C 0.387 3.613 6 O -0.432 6.432 7 N -0.327 5.327 8 C -0.025 4.025 9 C -0.186 4.186 10 C 0.058 3.942 11 H 0.092 0.908 12 N -0.348 5.348 13 C -0.370 4.370 14 H 0.090 0.910 15 C -0.205 4.205 16 N -0.579 5.579 17 Si 0.736 3.264 18 H -0.217 1.217 19 H -0.207 1.207 20 H -0.218 1.218 21 C 0.004 3.996 22 H 0.078 0.922 23 C -0.192 4.192 24 C -0.033 4.033 25 O -0.074 6.074 26 H 0.094 0.906 27 H 0.104 0.896 28 H 0.105 0.895 29 H 0.183 0.817 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.105 0.895 34 H 0.219 0.781 35 H 0.065 0.935 36 H 0.084 0.916 37 H 0.056 0.944 38 H 0.088 0.912 39 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -7.852 -12.595 9.265 17.496 hybrid contribution 0.527 0.745 -0.748 1.180 sum -7.325 -11.850 8.517 16.328 Atomic orbital electron populations 1.20325 0.84843 1.03958 1.03836 1.22330 0.94097 0.83882 1.06411 1.23123 0.90884 1.00095 1.07168 1.21512 0.94024 0.93997 1.13479 1.16853 0.87090 0.80631 0.76690 1.90751 1.29176 1.71393 1.51925 1.48348 1.10397 1.04576 1.69362 1.22599 0.87614 0.92385 0.99916 1.23169 0.99727 0.96541 0.99127 1.21249 0.93980 0.90069 0.88927 0.90787 1.42330 1.18255 1.53716 1.20483 1.19196 0.95967 1.19525 1.02332 0.91037 1.24706 0.97081 1.00831 0.97858 1.69649 1.22347 1.47423 1.18455 0.86229 0.80974 0.80673 0.78553 1.21724 1.20685 1.21829 1.22741 0.87788 0.90799 0.98297 0.92178 1.21782 1.01596 0.99609 0.96200 1.24283 0.83536 0.95508 0.99931 1.83737 1.16626 1.35552 1.71439 0.90624 0.89587 0.89475 0.81675 0.90823 0.91148 0.91016 0.89476 0.78098 0.93467 0.91584 0.94388 0.91168 0.76767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.51 10.40 36.01 0.37 -0.14 16 2 C -0.02 -0.21 7.28 -35.74 -0.26 -0.47 16 3 C -0.19 -2.46 9.17 -37.45 -0.34 -2.80 16 4 C -0.23 -3.41 6.20 -103.27 -0.64 -4.05 16 5 C 0.60 10.91 7.59 -12.54 -0.10 10.82 16 6 O -0.55 -11.59 16.18 5.27 0.09 -11.51 16 7 N -0.59 -10.42 3.06 -164.29 -0.50 -10.92 16 8 C 0.10 1.44 5.08 -2.53 -0.01 1.42 16 9 C -0.15 -2.17 6.68 -24.58 -0.16 -2.34 16 10 C 0.17 3.18 3.52 -66.10 -0.23 2.95 16 11 H 0.07 1.37 8.07 -51.93 -0.42 0.95 16 12 N -0.71 -16.34 3.83 -51.65 -0.20 -16.54 16 13 C -0.24 -6.21 8.44 -15.06 -0.13 -6.34 16 14 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 15 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 16 N -0.93 -27.00 13.06 55.49 0.72 -26.27 16 17 Si 0.90 21.84 29.55 -169.99 -5.02 16.81 16 18 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 21 C 0.11 2.07 3.41 -66.95 -0.23 1.84 16 22 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 23 C -0.13 -2.86 8.05 37.16 0.30 -2.56 16 24 C 0.04 0.48 11.91 30.07 0.36 0.84 16 25 O -0.18 -2.15 10.52 7.64 0.08 -2.07 16 26 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.17 1.88 5.21 -52.49 -0.27 1.61 16 30 H 0.07 0.91 5.85 -51.93 -0.30 0.60 16 31 H 0.07 1.09 7.81 -51.93 -0.41 0.69 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.38 9.52 7.84 -40.82 -0.32 9.20 16 35 H 0.26 7.25 8.31 -40.82 -0.34 6.92 16 36 H 0.07 1.44 7.42 -51.93 -0.39 1.06 16 37 H 0.04 0.81 7.08 -51.93 -0.37 0.44 16 38 H 0.07 1.68 7.35 -51.93 -0.38 1.30 16 39 H 0.22 2.22 8.06 -52.49 -0.42 1.80 16 LS Contribution 320.44 15.07 4.83 4.83 Total: -1.00 -31.67 320.44 -6.54 -38.20 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -5.36 Total: 8.61 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: -1.17 Total: -1.15 kcal Atomic # 7 Polarization: -53.75 SS G_CDS: 0.02 Total: -53.73 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: 0.17 Total: -13.58 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.67 -6.54 -38.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986193934.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.517 kcal (2) G-P(sol) polarization free energy of solvation -31.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds